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Questions and Answers
What defines mutualism in the context of symbiotic relationships?
What defines mutualism in the context of symbiotic relationships?
Which characteristic is NOT true of resident flora?
Which characteristic is NOT true of resident flora?
What is the role of a pathogen in a parasitic relationship?
What is the role of a pathogen in a parasitic relationship?
Which of the following describes amensalism?
Which of the following describes amensalism?
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Which of the following statements is accurate regarding bacteria?
Which of the following statements is accurate regarding bacteria?
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What is the primary role of reservoirs in the continuation of an infection?
What is the primary role of reservoirs in the continuation of an infection?
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Which of the following is an example of indirect contact transmission?
Which of the following is an example of indirect contact transmission?
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In vector transmission, which type specifically serves as a host for part of the pathogen's life cycle?
In vector transmission, which type specifically serves as a host for part of the pathogen's life cycle?
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Which type of transmission involves pathogens being released via respiratory droplets?
Which type of transmission involves pathogens being released via respiratory droplets?
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What is a common characteristic of zoonoses?
What is a common characteristic of zoonoses?
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What is one requirement for a disease to be classified by incidence?
What is one requirement for a disease to be classified by incidence?
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Which of the following pathogens is most likely to be transmitted via foodborne transmission?
Which of the following pathogens is most likely to be transmitted via foodborne transmission?
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What is a method of autoinoculation?
What is a method of autoinoculation?
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Which type of transmission requires a medium for the transfer of pathogens?
Which type of transmission requires a medium for the transfer of pathogens?
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Which bodily fluids are particularly highlighted for care when handling in healthcare settings?
Which bodily fluids are particularly highlighted for care when handling in healthcare settings?
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Which statement correctly describes prions?
Which statement correctly describes prions?
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What feature is common to all bacteria?
What feature is common to all bacteria?
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Which of the following infections occurs when multiple pathogens are present at the same location?
Which of the following infections occurs when multiple pathogens are present at the same location?
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What role do mycorrhizae play in relation to plants?
What role do mycorrhizae play in relation to plants?
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Which of the following correctly differentiates endotoxins from exotoxins?
Which of the following correctly differentiates endotoxins from exotoxins?
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Which infection pattern is characterized by symptoms that appear quickly and also resolve quickly?
Which infection pattern is characterized by symptoms that appear quickly and also resolve quickly?
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In the context of infectious disease terminology, what does 'septicemia' refer to?
In the context of infectious disease terminology, what does 'septicemia' refer to?
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What is the main function of a vaccine?
What is the main function of a vaccine?
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What does the term 'fomite' refer to?
What does the term 'fomite' refer to?
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Which stage of infection is crucial for a microorganism to establish itself in the host?
Which stage of infection is crucial for a microorganism to establish itself in the host?
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Which of the following terms refers to persistent, mild symptoms that do not cause apparent illness?
Which of the following terms refers to persistent, mild symptoms that do not cause apparent illness?
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What is a characteristic treatment approach for endemic diseases?
What is a characteristic treatment approach for endemic diseases?
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How can pathogens evade host immune defenses?
How can pathogens evade host immune defenses?
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What is the primary focus of epidemiology?
What is the primary focus of epidemiology?
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Which of the following best describes a prokaryotic cell?
Which of the following best describes a prokaryotic cell?
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What is a characteristic of prions?
What is a characteristic of prions?
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Which of the following statements about opportunistic infections is true?
Which of the following statements about opportunistic infections is true?
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Which route is NOT a common portal of entry for pathogens?
Which route is NOT a common portal of entry for pathogens?
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How does the respiratory tract serve as a portal of entry for pathogens?
How does the respiratory tract serve as a portal of entry for pathogens?
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What type of pathogen are viroids classified as?
What type of pathogen are viroids classified as?
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What is the role of microbial ecology?
What is the role of microbial ecology?
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Which of the following diseases is caused by a prion?
Which of the following diseases is caused by a prion?
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Which of these is an example of an exogenous source of infection?
Which of these is an example of an exogenous source of infection?
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What is the significance of the flora in the human body?
What is the significance of the flora in the human body?
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Which of the following is NOT a treatment application of applied microbiology?
Which of the following is NOT a treatment application of applied microbiology?
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What methods can pathogenic microorganisms use to exit the host?
What methods can pathogenic microorganisms use to exit the host?
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What characterizes the normal flora in healthy individuals?
What characterizes the normal flora in healthy individuals?
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Study Notes
Symbiosis
- Describes a close relationship between two different types of organisms in a community.
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Mutualism: Both members benefit from the interaction.
- E.g., E. coli in our gut releases vitamins we can't digest.
- Commensalism: One organism benefits, and the other is neither harmed nor helped.
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Parasitism: One organism benefits while the other is harmed slightly or may be killed.
- Pathogen: A parasite that causes disease.
- Amensalism: One organism can hamper or prevent the growth/survival of another without being affected by the other organism.
Normal Flora
- Newborns' first contact with microbes is through the birth canal.
- Followed by breathing and feeding.
- Throughout life, microbes establish residency in mucous membranes open to the environment.
- Resident flora: Remain part of the normal flora throughout a person's life.
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Transient flora:
- Found in the same locations as resident microbes.
- Only remain for a few hours, days, or months before they vanish.
- E.g., Bacillus laterosporus intermittently present in intestines (helps suppress fungi such as Candida).
Microbes
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Microbe: Small organisms visible only under a microscope.
- The study of microbes is "microbiology."
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Bacteria:
- Lack nuclei and membrane-bound organelles.
- Different shapes: rods, spheres, spirals.
- Found nearly everywhere on Earth.
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Viruses:
- Noncellular, submicroscopic particles.
- Consist of nucleic acid surrounded by a protein coat.
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Prions (proteinaceous infectious particles):
- Not cellular, not viral, lack nucleic acids.
- Proteins that misfold and become infectious agents.
- When they become abnormally folded, they become infectious particles.
- Diseases are called transmissible spongiform encephalopathies (e.g., mad cow disease, kuru).
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Viroids:
- Do not have a protein coat.
- Are plant pathogens.
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Fungi:
- Study of fungi = Mycology.
- Few fungi are pathogenic and virulent.
- Immune system usually fights fungal invasion.
- Have important symbiotic relationships with other organisms.
- Play a major role in decomposition.
- Mycorrhizae: Fungi on roots of plants.
- Fungal colonies are vegetative.
- Free-living and heterotrophic.
- Appear as yeast, molds, fleshy fungi.
- Have a cell wall composed of strong flexible polysaccharide called chitin.
Contamination and Infection
- Contamination: Presence of microbes in or on the body.
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Infection: The presence and growth of a microorganism in the body (with the exception of organisms of normal flora).
- The microorganism must gain entry into the host and its tissues.
- An infection does not necessarily cause disease.
Etiology of Infectious Disease
- The study of the cause of disease when an infectious agent causes pathological changes and interferes with normal body functions.
Patterns of Infection
- Local infections: Organism enters the body and remains confined to a specific tissue.
- Focal infections: Pathogen spreads from a local infection to other tissues.
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Systemic infections: Infection spreads to several sites and tissue fluids, usually by the way of the circulatory system.
- Septicemia, bacteremia, toxemia, viremia
- Mixed infection: Several infectious agents concurrently establish themselves at the same site.
- Acute infection: Appear rapidly, with severe symptoms, then vanish rapidly.
- Chronic infection: Usually less severe symptoms, but they persist for long periods of time.
- Primary infection: Initial infection.
- Secondary infection: Follows primary infection, typically caused by a different microbe than what caused the primary infection.
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Subclinical infection:
- Does not cause any apparent symptoms.
- Can be carried over long periods of time.
Stages of Infection
- Contamination: Presence of microbes in or on the body.
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Infection: The presence and growth of a microorganism in the body (with the exception of organisms of normal flora).
- The microorganism must gain entry into the host and its tissues.
- An infection does not necessarily cause disease.
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Adhesion:
- The first and most crucial step of infection.
- Without adhesion, the organism will be removed by ciliary motion, sneezing, coughing, swallowing, urine flow, tears, intestinal peristalsis.
- Bacteria must bind to host cells by pili, fimbriae, or specific membrane receptor sites.
- Adhesion can be specific or nonspecific.
- Electrostatic attraction, atomic & molecular vibrations.
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Colonization and Invasion:
- Human pathogens usually colonize tissues that are in contact with the external environment.
- Urogenital tract, Digestive tract, Respiratory tract, Conjunctiva.
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Invasion: May be aided by the production of extracellular substances that disrupt host cell membranes.
- Break down primary and secondary barriers of the host.
- Are called invasins - facilitate the growth and spread of the pathogen.
- Human pathogens usually colonize tissues that are in contact with the external environment.
Evasion of Host Defense
- Presence of capsules:
- Production of proteins that bind to host cell antibodies:
- Mutation of the organism to alter its antigenicity:
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Microbial strategies to thwart host phagocytes:
- Avoid contact with phagocytes.
- Inhibition of phagocytic engulfment.
- Survival inside the phagocytes.
- Production of products that kill or damage phagocytes before or after ingestion.
Toxins
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Toxigenic: Organism that produces toxins.
- Underlying mechanism by which microorganisms produce disease.
- Endotoxins: Toxins within the bacterial cell wall.
- Exotoxins: Toxins secreted by bacteria.
- Typical toxin chemical make-up: Either lipopolysaccharides or proteins.
Endemic, Epidemic, and Pandemic
- Endemic: Repeatedly present in a given population or geographical area.
- Epidemic: Occurs with greater frequency than usual in a population of a given area.
- Pandemic: Is a worldwide epidemic.
- Fomite: Any inanimate object or surface that can become contaminated with infectious microorganisms and act as a vehicle to transfer them to another person.
Vaccine
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Vaccine: The most effective method of preventing infectious diseases.
- Provides immunity or protection against a specific infectious disease.
- Works by stimulating the immune system to recognize and fight the pathogen.
- Health Canada provides information on vaccine-preventable diseases:
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CDC's Global Immunization Division (GID):
- Public health mission to vaccinate against deadly diseases.
- Prevent epidemics and pandemics.
- Eradicated smallpox and polio.
Epidemiology
- The study of the distribution and cause of disease in populations.
- Serves as the foundation and logic of interventions needed in the interest of public health and preventive medicine.
- Focuses on: How many people are affected, where, the outcome of the disease (recovery, death, disability, and so on).
- Major importance to public health departments.
- Public Health Agency of Canada: https://www.canada.ca/en/public-health.html
- CDC: The central source of epidemiological information in the United States.
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Morbidity and Mortality Weekly Report:
- Contains data on morbidity, incidence of specific notifiable diseases, mortality.
Microorganism Classification
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Prokaryotes:
- No membrane-bound organelles, such as a nucleus (pro, before; karyon, nucleus).
- Archaea, bacteria.
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Eukaryotes:
- With membrane-bound cell organelles.
- Algae, fungi, protozoans.
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Shared Properties:
- Methods of reproduction: cell division, binary fission, mitosis, or meiosis.
- Presence of DNA and RNA for protein synthesis.
- Plasma membranes.
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Viruses:
- Noncellular, submicroscopic particles.
- Consist of nucleic acid surrounded by a protein coat.
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Prions (proteinaceous infectious particles):
- Not cellular, not viral, lack nucleic acids.
- Proteins that misfold and become infectious agents.
- When they become abnormally folded, they become infectious particles.
- Diseases are called transmissible spongiform encephalopathies (e.g., mad cow disease, kuru).
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Viroids:
- Do not have a protein coat.
- Are plant pathogens.
Microbes Related to Health and Disease
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Microbial ecology:
- Often deals with biofilms.
- Interactions:
- Mutualism
- Commensalism
- Synergism
- Parasitism
- Normal flora versus pathogens:
- Foodborne diseases: Organism/toxin contamination.
- Waterborne diseases: Organism contamination.
- Airborne diseases: Aerosols.
Application of Microbiology
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Applied Microbiology:
- Food production: Yogurt, bread.
- Alcoholic beverages: Wine, beer.
- Treatment of water supplies: Indicator organisms.
- Pharmaceutical agents: Penicillin.
- Agriculture: Soil microbes, nitrogen cycle.
- Bioremediation: Petroleum-digesting bacteria.
- Energy: Fuel cells, ethanol, methane.
- Forensics: Medicine, criminal justice, epidemiology, bioterrorism.
Normal Flora
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Normal flora: The microorganisms that normally live in or on the body.
- Usually protective but can become opportunistic pathogens if the balance is disrupted.
Opportunistic Infection
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Opportunistic pathogens: Microbes of the normal flora that become pathogenic when the balance is disrupted.
- Compromised immune system: AIDS, malnutrition, stress, age, chemo/radiation therapy.
- Changes in the normal flora: Normal flora is usually protective, competition is reduced, and the organism enters areas of the body where it is not normally present.
Aspects of Infection
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Portal of entry: Sites where pathogens enter the body.
- Exogenous: From outside the body.
- Endogenous: Organism is already in the body (e.g., normal flora).
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Virulence: The degree of pathogenicity.
- Pathogenicity: The ability of a microbe to cause disease.
- Portal of exit: Sites where pathogens leave the body to spread to others.
Portals of Entry
- Skin: Thick layer of keratinized dead cells. Pathogens can enter through natural openings or damaged skin (abrasions, cuts, punctures, scrapes).
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Mucous membranes:
- Gastrointestinal tract: Enteric bacteria (e.g., Salmonella, Shigella, Vibrio, E.coli), viruses (e.g., poliovirus, hepatitis A), protozoans (e.g., Entamoeba histolytica, Giardia lamblia), and helminths (e.g., trematodes, cestodes, nematodes).
- Respiratory tract: Most frequently used portal of entry. Pathogens enter through air, dust particles, moisture, and droplets from infected people.
- Urogenital tract: Transmitted by sexual contact. Girls and women who are not sexually active are susceptible to lower urinary tract infections.
- Conjunctiva: Usually a good barrier against infectious agents. Some bacteria can easily attach to this membrane
- Placenta: Usually an effective barrier against microorganisms. Some microbes can cross the placenta and infect the embryo or fetus.
Epidemiology and Public Health
- Prevalence: The total number of existing cases in the entire population.
- Incidence: The number of new cases over a certain period of time compared with the general healthy population.
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Reservoirs: Sites where pathogens are maintained and are a source of infection.
- Nonliving reservoirs: Soil, water, food.
- Animal reservoirs: Zoonoses (diseases that occur primarily in animals and can be transmitted to humans).
- Human carriers: Infected but don't have symptoms.
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Modes of transmission:
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Contact transmission:
- Direct: Person-to-person by touching, kissing, intercourse.
- Indirect: Contact with a fomite (nonliving object).
- Droplet Transmission: Respiratory droplets released by exhaling, laughing, coughing, or sneezing.
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Vehicle transmission:
- Airborne: Droplet nuclei (droplets of mucous), dust.
- Bodily fluid: Especially important for healthcare workers.
- Waterborne: Untreated or poorly treated water.
- Foodborne: Incompletely cooked or poorly processed foods.
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Vector transmission:
- Biological vectors: Transmit pathogen and serve as a host (e.g., mosquitoes, ticks, lice, fleas).
- Mechanical vectors: Passively carry agents to a new host (e.g., flies).
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Contact transmission:
Healthcare-Associated Infections (HAIs)
- Infections acquired in healthcare facilities.
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Types:
- Contact transmission (e.g., Staphylococcus aureus, Clostridium difficile, MRSA).
- Airborne transmission (e.g., Mycobacterium tuberculosis, Aspergillus fumigatus).
- Droplet transmission (e.g., Streptococcus pneumoniae, Haemophilus influenzae).
- Vehicle transmission (e.g., Acinetobacter baumannii, Pseudomonas aeruginosa).
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Modes of transmission:
- Often spread through direct contact or airborne droplets.
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Implications:
- Can be serious and even life-threatening, leading to increased hospital stays, costs, and mortality.
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Control and prevention:
- Hand hygiene, isolation procedures, environmental cleaning, proper use of personal protective equipment.
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Example infections:
- Urinary tract infections, pneumonia, surgical wound infections.
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