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Questions and Answers
What is the estimated total protein mass within a bacterial cell?
How many carbon atoms are estimated to be present in a single bacterium?
What is the mean mass of a typical protein in a bacterium?
What is the approximate volume of a typical E.coli cell?
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What shape can be approximated for a typical E.coli cell?
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What is a significant consequence of cellular crowding on protein interactions?
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At what concentration can crystallins be found in the lens, leading to strong crowding effects?
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How does crowding affect the thermal stability of crystallins in the lens?
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What is the primary reason cells are small?
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What role do chaperone proteins like GroEL play in crowded cellular environments?
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Which of the following diseases is associated with protein aggregation that may be influenced by crowding?
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Which structure is common to all cells?
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What defines prokaryotic cells?
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What is the primary role of ribosomes in a cell?
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What is a key feature of eukaryotic cells?
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What is the function of the endomembrane system?
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Which characteristic distinguishes archaea from bacteria?
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What occurs when the metabolic rate of a cell exceeds its exchange of materials?
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What is a key characteristic of both mitochondria and chloroplasts?
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Which cytoskeleton component is primarily responsible for cellular contractions and movement?
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What is the main function of the extracellular matrix (ECM) in animal cells?
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What is the process called when the middle of a cell pinches off to form two new cells?
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Why is a cell census important in understanding biological phenomena?
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Which process describes how cells replicate to form two new daughter cells?
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What structure do cilia and flagella share that is crucial for their movement?
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What percentage of the dry weight of an E. coli cell is made up of proteins?
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How do intermediate filaments contribute to a cell's functionality?
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What feature of E. coli makes it a commonly used model organism in experiments?
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What is the average mean spacing between protein molecules within a typical cell?
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Which cytoskeleton element is mainly involved in moving materials within the cell?
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In the cell cycle, what is the initial task that must occur before cell division?
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In what year was the genome of E. coli sequenced?
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What role does the organizational control mechanism play in developing organisms?
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Which experimental advantage does the presence of plasmids provide in E. coli?
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Study Notes
Cell Size and Function
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Cells need to exchange materials with their environment to survive, requiring:
- Metabolism: Production of chemical energy for essential functions.
- Material Exchange: Intake of nutrients and removal of waste.
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The rate of metabolism is proportional to the cell's volume. Larger cells need more energy.
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The rate of material exchange is proportional to the cell's surface area. More membrane surface allows for greater material movement.
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As a cell grows, its volume increases faster than its surface area, decreasing the surface area to volume ratio (SA:Vol).
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A low SA:Vol ratio hinders efficient material exchange, leading to insufficient resources and waste buildup, eventually causing the cell to die.
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To maintain a high SA:Vol ratio for survival, growing cells divide, maintaining a smaller size.
Cell Theory
- All cells share fundamental structures:
- Genetic Material: Found in a nucleoid (prokaryotes) or nucleus (eukaryotes).
- Cytoplasm: A semi-fluid matrix that fills the cell.
- Plasma Membrane: A phospholipid bilayer that encloses the cell.
Prokaryotic Cells
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Lack a membrane-bound nucleus, with genetic material located in the nucleoid region.
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Two types of prokaryotes:
- Archaea: Extremophiles adapted to harsh environments.
- Bacteria: Diverse group, some beneficial, others pathogenic.
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Possess:
- Nucleoid: Contains genetic material.
- Cytoplasm: Semi-fluid matrix.
- Plasma Membrane: Encloses the cell.
- Cell Wall: Provides structural support.
- Ribosomes: Sites of protein synthesis.
- No membrane-bound organelles.
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Some prokaryotes possess flagella:
- Tail-like structures for locomotion.
- Rotary motion propels the cell.
Eukaryotic Cells
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Possess a membrane-bound nucleus for housing genetic material.
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More complex than prokaryotic cells, with specialized compartments for various cellular processes.
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Contain the endomembrane system: A network of internal membranes that divide the cell into compartments to isolate and facilitate specific functions.
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Have a cytoskeleton: A network of protein fibers for maintaining cell shape, organelle organization, and intracellular transport.
Nucleus
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Contains the cell's genetic material organized into multiple, linear chromosomes.
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Surrounded by the nuclear envelope: Two phospholipid bilayers that regulate passage of molecules between the nucleus and cytoplasm.
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Inside the chromosomes, DNA is associated with proteins, forming chromatin, which compactly packages the genetic material.
Ribosomes
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Sites of protein synthesis in the cell.
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Composed of ribosomal RNA and proteins.
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Found in the cytosol of the cytoplasm and attached to internal membranes.
Endomembrane System
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A series of interconnected membranes throughout the cytoplasm, dividing the cell into compartments with specialized functions.
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Includes:
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Mitochondria:
- Possess two membranes.
- Contain their own DNA and ribosomes.
- Approximately the size of a prokaryotic cell.
- Divide by a process similar to bacterial division.
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Mitochondria:
Cytoskeleton
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A network of protein fibers found in all eukaryotes.
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Functions:
- Supports the shape of the cell.
- Maintains the positions of organelles.
- Facilitates movement of materials within the cell.
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Different types of cytoskeleton fibers:
- Actin filaments: Involved in cellular contractions, crawling, and pinching.
- Microtubules: Provide organization to the cell and transport materials.
- Intermediate filaments: Provide structural stability.
Cell Movement
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Different mechanisms:
- Crawling: Achieved through actin filaments and the myosin protein.
- Flagella: Undulation of tail-like appendages.
- Cilia: Hair-like structures, often arranged in rows, to propel cells forward.
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Shared structure for cilia and flagella:
- 9+2 Structure: 9 pairs of microtubules surrounded by a pair of central microtubules.
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Cilia are typically more numerous than flagella on a cell.
Extracellular Structures
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Extracellular matrix (ECM):
- Surrounds animal cells.
- Composed of glycoproteins and fibrous proteins, like collagen.
- May be connected to the cytoplasm via integrin proteins in the plasma membrane.
Cell Cycle and Organism Development
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Cell Cycle: The process of new cell creation from existing cells.
- Two major tasks:
- DNA Replication: Duplication of the cell's genetic material.
- Mitosis (M phase): Organization and separation of replicated chromosomes into daughter cells.
- After chromosome separation, the cell elongates, and cytokinesis occurs, pinching the middle of the cell, resulting in two daughter cells.
- Two major tasks:
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Organizational Control Mechanism: Regulates how cells form tissues and structures in developing embryos, leading to specialized anatomical features.
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Spatial and Temporal Organization: Ensures the proper arrangement of cells and structures in space and time, contributing to the complexity of organisms.
Cell Census
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A quantitative understanding of the cellular components is essential for studying biological processes.
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Estimate of key components in model cells:
- Proteins: Millions per cell.
- Ribosomes: Thousands per cell.
- Lipids: Millions per cell.
- Genome Size: Millions of base pairs.
E. coli: Model Organism
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Advantages of using E. coli:
- Easy to isolate: Found commonly in human fecal matter.
- Aerobic growth: Able to grow in the presence of oxygen.
- Easy to culture: High growth rate.
- Sequenced genome: Facilitates genetic research.
- Plasmids: Extrachromosomal DNA easily manipulated with molecular biology techniques.
- Mutant creation: Easy to manipulate genetically.
E. coli: Cell Size and Molecular Composition
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Size:
- Diameter: 1 micrometer (μm).
- Length: 2 μm.
- Volume: 1 μm³.
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Shape: Approximated as a spherocylinder (cylinder with hemispherical caps).
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Composition:
- Macromolecules: Proteins, lipids, carbohydrates, nucleic acids.
- Small molecules and ions: Water, amino acids, sugars, salts.
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Typical protein mass: 30,000 Daltons (Da).
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Number of proteins in an E. coli cell: Estimated to be in the millions.
Cellular Crowding
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Crowding Effect: Molecules in the cell are densely packed, leading to significant interactions.
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Implications:
- Accelerates protein folding: Crowding can speed up the process of protein folding.
- Increases protein interaction strength: Stronger interactions between proteins and DNA, important for processes like transcription and replication.
- Influences cell behavior: Affects cell response to volume changes, influencing various cellular processes.
- Disease implications: Might play a role in protein aggregation diseases like Alzheimer's disease and sickle cell anemia.
Hierarchy of Spatial Scales in Biology
- The size of biological structures varies widely, from the scale of atoms to the scale of organisms.
E. coli: Growth Rate and Cell Volume
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Cell volume growth:
- Measured using microscopy and microfluidic devices.
- Confirm that E. coli volume grows exponentially with its growth rate.
Yeast Cells: Model for Eukaryotic Research
- Yeast cells (Saccharomyces cerevisiae): Commonly used to study eukaryotic cells due to their simple structure and amenability to genetic manipulation.
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Description
Test your understanding of cell size and function concepts, including metabolism, material exchange, and the significance of surface area to volume ratio. This quiz also covers key elements of cell theory and how cells adapt to maintain efficient functions. Perfect for biology students!