Bioinformatics_Midterm_2.pdf

BIOLOGICAL DATABASES assumethataswereadthissentencetherearenos pacesbetweenwordsnorpunctuationmarks delimitingtheboundariesofwrittenthought  SEAT WORK Decode using the GENETIC CODE: Template: GAT AAT GCT TAG ATC TCG TAA CTT ATC TTT GAA cDNA: tRNA: AA: Letter: DATA...

BIOLOGICAL DATABASES assumethataswereadthissentencetherearenos pacesbetweenwordsnorpunctuationmarks delimitingtheboundariesofwrittenthought  SEAT WORK Decode using the GENETIC CODE: Template: GAT AAT GCT TAG ATC TCG TAA CTT ATC TTT GAA cDNA: tRNA: AA: Letter: DATABASE collection of information that is organized so that it can easily be accessed, managed, and updated. BIBLIOGRAPHIC FULL-TEXT NUMERIC IMAGES  DATA Data is raw, unorganized facts that need to be processed. Example:- Each student's test score is one piece of data. INFORMATION When data is processed, organized, structured or presented in a given context so as to make it useful, it is called information. Example:- score of a class or of the average entire school is information that can be derived from the given data. Bibliographic Full-text Database Numeric Database Image Database JSTOR BIOLOGICAL DATABASE Stores of biological information Technology of databases Public and Private repositories RNA, DNA, & Protein  Different classifications of biological databases Type of data nucleotide sequences protein sequences proteins sequence patterns or motifs macromolecular 3D structure gene expression data metabolic pathways NUCLEOTIDE DATABASE Protein Database Protein Structure Database Macromolecular Structure Gene Expression Database Metabolic Pathway Database  How much DNA sequence is stored in public databases? Where are the data stored? Centralized Databases Store DNA Sequences GenBank Taxa represented in GenBank Ten most sequenced organisms in GenBank Codes in GenBank Types of Data in GenBank/EMBL-Bank/DDBJ  Bioinformatics Databases Genomic Database DNA Database RNA Data Protein Database Central Bioinformatics Resources: NCBI and EBI