Enzymes: Biological Catalysts

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Questions and Answers

What structural aspect of an enzyme is most critical to its function?

  • The presence of specific peptide bonds.
  • Its amino acid sequence.
  • Its 3D structure. (correct)
  • Its overall size and molecular weight.

Enzymes increase the rate of reaction by lowering what?

  • The overall energy of the system.
  • The activation energy. (correct)
  • The equilibrium constant.
  • The concentration of products.

Which of the following is true regarding uncatalyzed reactions?

  • They tend to be faster than catalyzed reactions.
  • They tend to be slow. (correct)
  • They do not require activation energy.
  • They proceed at the same rate as catalyzed reactions.

What environmental conditions are most suitable for enzyme function?

<p>Neutral pH, body temperature and aqueous environments. (C)</p> Signup and view all the answers

What is the induced fit model?

<p>A model where the active site changes shape to better fit the substrate. (A)</p> Signup and view all the answers

What might be needed in addition to amino acids for some enzymes to function?

<p>Cofactors and/or coenzymes. (A)</p> Signup and view all the answers

What is the primary consequence if human enzymes malfunction?

<p>Various diseases may occur. (D)</p> Signup and view all the answers

Enzymes are known to catalyze almost every reaction within which system?

<p>Living cells. (A)</p> Signup and view all the answers

Why are enzymes highly specific and efficient compared to industrial catalysts?

<p>Enzymes have a precise 3D structure and active site tailored to specific substrates. (C)</p> Signup and view all the answers

What happens to an enzyme if it is denatured or dissociated?

<p>It will not work. (B)</p> Signup and view all the answers

What is the role of digestive enzymes in the body?

<p>To break down food and release nutrients and energy. (D)</p> Signup and view all the answers

In what industries might enzymes be commonly found and used?

<p>Cheese making, food processing, and agriculture. (C)</p> Signup and view all the answers

Which of the following represents the correct sequence of events in enzyme catalysis according to the induced fit model?

<p>Substrate binds, active site changes shape to fit substrate, reaction occurs. (B)</p> Signup and view all the answers

How do enzymes provide an alternative reaction pathway?

<p>By lowering the energy of activation. (A)</p> Signup and view all the answers

Given that enzymes function optimally under specific conditions, what would likely happen if an enzyme were moved from its optimal temperature to a much higher temperature?

<p>The enzyme would become denatured, losing its activity. (B)</p> Signup and view all the answers

If a reaction that is normally catalyzed by an enzyme in the human body began to occur at a significantly reduced rate, what factor might be responsible?

<p>A change in pH levels away from the enzyme's optimum. (A)</p> Signup and view all the answers

A scientist discovers a new enzyme. Preliminary studies show it functions best at a pH of 2.0. In what part of the human body might this enzyme be most active?

<p>The stomach. (A)</p> Signup and view all the answers

In the context of industrial applications, why might an enzyme be preferred over a traditional chemical catalyst?

<p>Enzymes operate under mild conditions and are highly specific, reducing unwanted side products. (D)</p> Signup and view all the answers

If a genetic mutation caused a change in the amino acid sequence of an enzyme but did not significantly alter its 3D structure, what would be the most likely outcome?

<p>The enzyme's specificity for its substrate would change. (D)</p> Signup and view all the answers

Why do enzymes not get consumed during a reaction?

<p>Because their active sites are regenerated after catalyzing the reaction. (B)</p> Signup and view all the answers

According to the 'RNA world hypothesis', what dual role did RNA play in early evolutionary life?

<p>Storage molecule for genetic information and a catalyst. (A)</p> Signup and view all the answers

What is the role of metal ions like $Fe^{2+}$ or $Zn^{2+}$ in enzyme activity?

<p>They are commonly required as cofactors for the activity of some enzymes. (A)</p> Signup and view all the answers

How do coenzymes primarily function in enzymatic reactions?

<p>By acting as transient carriers for specific atoms or functional groups. (A)</p> Signup and view all the answers

Many coenzymes are derived from what class of biomolecules?

<p>Vitamins (D)</p> Signup and view all the answers

In redox reactions, what role does $NAD^+$ play, and in what forms does it exist?

<p>It carries hydride ions and exists in both reduced (NADH) and oxidized ($NAD^+$) forms. (C)</p> Signup and view all the answers

What distinguishes ribozymes from other enzymes?

<p>Ribozymes are RNA enzymes, whereas other enzymes are typically proteins. (A)</p> Signup and view all the answers

What is the purpose of cofactors in enzymatic reactions?

<p>To provide additional chemical functionality for the enzyme to perform its function (B)</p> Signup and view all the answers

How does $Zn^{2+}$ facilitate the reaction catalyzed by alcohol dehydrogenase?

<p>It polarizes the carbonyl oxygen of acetaldehyde, aiding hydride transfer from NADH. (A)</p> Signup and view all the answers

What kind of role can cofactors play in the structure of enzymes?

<p>Cofactors can play a structural role in enzymes. (A)</p> Signup and view all the answers

Hammerhead ribozymes are known for what specific function?

<p>Promoting site-specific cleavage of RNA molecules. (A)</p> Signup and view all the answers

What is the role of inorganic ions such as $Cu^{2+}$ or $Fe^{3+}$?

<p>They can serve as cofactors for enzymes. (C)</p> Signup and view all the answers

What chemical groups are biotin and coenzyme A responsible for transferring?

<p>Acyl groups. (E)</p> Signup and view all the answers

What enzyme is zinc commonly a cofactor for?

<p>Carbonic anhydrase, alcohol dehydrogenase, and carboxypeptidases A and B. (C)</p> Signup and view all the answers

What do flavin adenine dinucleotide and lipoate have in common?

<p>They both transfer electrons. (D)</p> Signup and view all the answers

What precursor is thiamine pyrophosphate derived from?

<p>Thiamine (vitamin $B_1$). (A)</p> Signup and view all the answers

What chemical groups are transferred by tetrahydrofolate?

<p>One-carbon groups. (D)</p> Signup and view all the answers

What enzymes involve potassium ions $(K^+)$ as cofactors?

<p>Pyruvate kinase, hexokinase, and glucose 6-phosphatase. (D)</p> Signup and view all the answers

What enzymes involve magnesium ions $(Mg^{2+})$ as cofactors?

<p>Hexokinase, glucose 6-phosphatase, and pyruvate kinase (A)</p> Signup and view all the answers

What vitamin is flavin adenine dinucleotide derived from?

<p>Vitamin $B_2$ or Riboflavin (B)</p> Signup and view all the answers

What class of molecule are coenzymes?

<p>Complex organic molecules (B)</p> Signup and view all the answers

What characteristic distinguishes prosthetic groups from coenzymes?

<p>Prosthetic groups bind tightly or covalently to the enzyme, whereas coenzymes bind more loosely. (D)</p> Signup and view all the answers

Which of the following best describes the function of the active site of an enzyme?

<p>It provides a specific pocket where the substrate binds and the reaction occurs. (B)</p> Signup and view all the answers

What is the functional difference between an apoenzyme and a holoenzyme?

<p>An apoenzyme is the inactive enzyme lacking its cofactor, while a holoenzyme is the active enzyme with its necessary cofactor. (B)</p> Signup and view all the answers

According to the classification of enzymes, what type of reaction do hydrolases catalyze?

<p>Hydrolysis reactions (A)</p> Signup and view all the answers

If an enzyme's active site surface is lined with amino acid residues, what is the primary purpose of these residues?

<p>To allow the substrate to bind and catalyze chemical transformations. (C)</p> Signup and view all the answers

Why is it essential for all components to be present for an enzyme to function effectively?

<p>To ensure the active site is properly formed and substrates can bind correctly. (C)</p> Signup and view all the answers

In what way may the active site sometimes sequester the substrate?

<p>By enclosing the substrate completely, isolating it from the solution. (C)</p> Signup and view all the answers

If an enzyme is classified as a lyase, what type of reaction does it catalyze?

<p>Cleavage of C-C, C-O, C-N, or other bonds by elimination, or addition of groups to double bonds. (B)</p> Signup and view all the answers

How do enzymes recognize their specific substrates?

<p>Based on their molecular structure and chemical functions. (B)</p> Signup and view all the answers

What role do metal ions play when they act as cofactors?

<p>Participating in the catalytic reaction within the enzyme's active site. (C)</p> Signup and view all the answers

If an enzyme is classified as an oxidoreductase, what type of reaction does it catalyze?

<p>Transfer of electrons (D)</p> Signup and view all the answers

If an enzyme is classified as a transferase, what type of reaction does it catalyze?

<p>Group transfer reactions (A)</p> Signup and view all the answers

If an enzyme is classified as an isomerase, what type of reaction does it catalyze?

<p>Transfer of groups within molecules to yield isomeric forms (A)</p> Signup and view all the answers

Given that chymotrypsin is a protease that catalyzes hydrolysis of peptide bonds, what type of amino acids is it most specific for?

<p>Aromatic amino acids (Trp, Phe, Tyr) (C)</p> Signup and view all the answers

How does the enzyme's active site ensure substrate specificity?

<p>By having specific amino acid residues arranged to interact selectively with a particular substrate. (A)</p> Signup and view all the answers

What is the role of cosubstrates in enzyme-catalyzed reactions?

<p>They bind and release from the enzyme during the reaction cycle. (B)</p> Signup and view all the answers

Which statement best summarizes how enzymes contribute to metabolic processes?

<p>By increasing the rate at which chemical reactions occur in the body. (B)</p> Signup and view all the answers

What determines the specificity of an enzyme for its substrate?

<p>The shape and chemical properties of the active site. (D)</p> Signup and view all the answers

Why is the precise positioning of the substrate within an enzyme's active site critical for catalysis?

<p>It optimizes proximity and orientation for the reaction to occur. (A)</p> Signup and view all the answers

How do enzymes affect the equilibrium of a reaction?

<p>They impact the rate of reaction but not the equilibrium. (D)</p> Signup and view all the answers

What must be overcome for a reaction to occur?

<p>The activation energy barrier (ΔG‡) (D)</p> Signup and view all the answers

How does the presence of an enzyme affect the Gibbs free energy change (ΔG) of a reaction?

<p>It does not change the overall ΔG of the reaction. (D)</p> Signup and view all the answers

What is the relationship between the activation energy (Ea) of a reaction and its reaction rate?

<p>The higher the Ea, the slower the reaction. (D)</p> Signup and view all the answers

In enzymatic reactions, what is represented by ES and EP?

<p>Enzyme-Substrate and Enzyme-Product intermediates, respectively. (B)</p> Signup and view all the answers

What happens to the amino acid side chains of an enzyme if the pH is outside of its optimal range?

<p>They become incorrectly ionized, leading to loss of function. (D)</p> Signup and view all the answers

Which of the following statements accurately describes the role of enzymes in a chemical reaction?

<p>Enzymes lower the activation energy of the reaction. (C)</p> Signup and view all the answers

How is Gibbs free energy related to enthalpy (H), temperature (T), and entropy (S)?

<p>ΔG = ΔH - TΔS (D)</p> Signup and view all the answers

Pepsin, an endopeptidase found in the stomach, is optimally active at what pH?

<p>Highly acidic pH (D)</p> Signup and view all the answers

In a reaction coordinate diagram, what does the transition state represent?

<p>The activated form of molecules at the top of the energy 'hill' (B)</p> Signup and view all the answers

How does the environment impact the reaction?

<p>Impacts the rate of reaction but not the equilibrium. (C)</p> Signup and view all the answers

What are endopeptidases known to do?

<p>Hydrolyze peptide bonds (A)</p> Signup and view all the answers

Where is G6P, which hydrolyzes gluc-6-phosphate to produce glucose + free phosphate, found?

<p>Liver (A)</p> Signup and view all the answers

According to the material, the rate of a reaction will increase when:

<p>Decrease in free energy (C)</p> Signup and view all the answers

Compared to the uncatalyzed reaction, the catalyzed reaction will have a:

<p>AGcat that is lower than AGuncat (D)</p> Signup and view all the answers

In reactions, enzymes are:

<p>Catalyzed (B)</p> Signup and view all the answers

According to the image, what is equal to the ground state?

<p>Resting S/P's energy level (D)</p> Signup and view all the answers

Which statement is correct regarding enzymatic reaction in regards to the substrate, S, becoming a product, P?

<p>S becomes P as reaction progresses. (D)</p> Signup and view all the answers

According to the image, in a simple reaction, what is the last item to be produced?

<p>E + S ⇄ ES ⇄ EP ⇄ E + P (B)</p> Signup and view all the answers

When old bonds are broken and new bonds are formed, energy is:

<p>Given out (C)</p> Signup and view all the answers

Flashcards

Enzymes as catalysts

Enzymes are biological catalysts that increase the rate of reaction without being consumed.

Enzyme structure

Enzymes are usually proteins, and their activity depends on the integrity of their 3D structure.

Denatured Enzymes

When enzymes are denatured or dissociated, they won't work.

Reaction speed

Uncatalyzed reactions tend to be slow compared to enzyme-driven reactions.

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Enzyme specificity

Most enzymes are highly specific and efficient compared to industrial or chemical catalysts.

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Optimal conditions

Enzymes function in mild conditions, such as neutral pH, body temperature, and aqueous environments.

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Enzymes in digestion

Enzymes in the body break down food, release nutrients, and energy.

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Enzymes' role in cells

Our bodies need enzymes to catalyze almost every reaction in cells.

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Enzyme malfunction

If human enzymes malfunction, diseases may occur.

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Enzymes in industry

Enzymes are found and used in industry (cheese making, food processing) and agriculture (animal feed additives).

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Activation energy

Lowering the activation energy provides an alternative reaction route.

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Enzyme helpers

Some enzymes only require their amino acids to function, but others require cofactors and/or coenzymes.

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Catalytic RNA

RNA molecules possess complex tertiary structures that enable them to be catalytically active.

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RNA world hypothesis

RNA can act as genetic storage and a catalyst.

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Cofactors

Extra molecules or ions required for enzyme activity; often metal ions like Fe2+ or Zn2+.

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Coenzymes

Complex organic molecules needed for enzyme function, derived from vitamins acting as transient carriers of functional groups.

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Ribozymes

Enzymes that have RNA as part of their active site.

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NAD

Commonly used in redox reactions; carries hydride ion (H-) and exists in reduced (NADH) and oxidized (NAD+) forms.

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Cofactor & coenzyme necessity

Some enzymes require a cofactor AND a coenzyme to function, such as Alcohol dehydrogenase.

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Prosthetic Groups

Bind tightly/covalently to a protein and act as structural elements.

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Holoenzyme

A complete, catalytically active enzyme, including both protein (apoenzyme) and cofactor.

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Apoenzyme

The protein part of an enzyme that requires a cofactor to function; inactive without the cofactor.

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Active Site

Specific pocket on an enzyme where the substrate binds and the reaction occurs.

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Substrates

Enzymes recognize these based on their molecular structure and chemical functions

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Active site surface

Surface lined with amino acid (AA) residues that allow substrate binding and catalyze chemical transformation.

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Active site (AS)

As often encloses substrate, completely sequestering it from solution

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Chymotrypsin

A protease that catalyses hydrolysis of peptide bonds, specific for those next to aromatic amino acids (Trp, Phe, Tyr)

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Oxidoreductases

Transfer of electrons (hydrides or H atoms).

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Oxidoreductases

Transfer of electrons (hydride ions or H atoms)

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Transferases

Transfer of functional groups

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Hydrolases

Hydrolysis reactions (transfer of functional groups to water)

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Lyases

Cleavage by elimination or addition of groups to double bonds.

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Isomerases

Transfer of groups within molecules to yield isomeric forms

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Ligases

Formation of bonds by condensation coupled to ATP cleavage.

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Cofactor types

Coenzymes and cosubstrates

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S → P and ΔG

As a reaction progresses, the substrate (S) is converted into product (P), causing a change in the system's Gibbs Free Energy (ΔG).

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Ground State

Energy level of the substrate (S) and product (P) in their resting state.

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Activation Energy Barrier (ΔG‡)

The energy barrier (ΔG‡) that must be overcome for a reaction to occur.

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Transition State (‡)

The activated form of molecules at the peak of the energy hill, where decay back to substrate or progression to product is equally likely.

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Ea and Reaction Rate

The higher the activation energy (Ea), the slower the reaction rate.

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Enzymes' Impact

Enzymes affect the rate of reaction (ROR) but not the equilibrium; they speed up the conversion of substrate (S) to product (P) but do not change the equilibrium constant.

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Enzymatic Reaction Equation

A simplified representation of a reaction involving an enzyme (E), substrate (S), and product (P): E + S ⇌ ES ⇌ EP ⇌ E + P.

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Gibbs Free Energy Equation

∆G = ∆H - T∆S, where ∆G is Gibbs free energy, ∆H is enthalpy, T is temperature, and ∆S is entropy. Gibbs free energy represents the difference between systems.

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pH and Enzyme Activity

Enzyme activity is influenced by pH levels. Amino acid side chains will ionize incorrectly outside of the enzyme's optimal pH range, leading to a loss of function.

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Catalyzed vs Uncatalyzed

ΔG‡cat is lower than ΔG‡uncat

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Pepsin Function

Pepsin is an endopeptidase found in the stomach that hydrolyzes peptide bonds.

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Study Notes

Enzymes in Reactions

  • As a reaction progresses from substrate (S) to product (P), the system's Gibbs free energy (ΔG) changes.
  • Old bonds break (requires energy), and new bonds form (releasing energy); S and P exist at different energy levels.
  • The ground state signifies the energy level of resting S and P
  • An activation energy (Ea) barrier (ΔG‡) must be overcome for the reaction to occur.
  • The transition state (‡) represents the activated form of molecules at the peak of the 'E hill', where decay back to S or progression to P is equally likely.
  • A higher Ea results in a slower reaction rate.
  • Enzymatic reactions involve intermediates like ES (enzyme-substrate complex) and EP (enzyme-product complex), leading to more P.
  • Lowering Ea accelerates the reaction rate (ROR↑).
  • Intermediates introduced are ES and EP
  • Decreasing the activation energy (ΔG‡cat) occurs in the presence of a catalyst.
  • Gibbs free energy is important and can be calculated: ΔG = ΔH - TΔS (difference between systems) or G = H - TS, where ΔH is enthalpy, T is temperature, and ΔS is entropy.
  • Enzymes influence the rate of reaction (ROR) but not the equilibrium; they speed up S to P conversion.
  • A simple reaction can be written as E + S ⇌ ES ⇌ EP ⇌ E + P
  • Enzymes themselves are not consumed in the reaction and act as catalysts.

Enzyme Activity

  • Enzyme activity is affected by pH.
  • If the pH deviates from the optimal range, amino acid side chains can become incorrectly ionized, leading to a loss of function.
  • Pepsin, found in the stomach, is an endopeptidase that hydrolyzes peptide bonds.
  • G6P (glucose-6-phosphatase) in the liver hydrolyzes glucose-6-phosphate to produce glucose + free phosphate.

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