MODULE 1 BIOCHEM REVIEW PACKET #2
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Questions and Answers

What would happen to the reaction rate of an enzyme with a low Km if the substrate concentration decreases to low levels?

  • The reaction rate will remain relatively high. (correct)
  • The reaction rate will be unaffected.
  • The reaction rate will decrease significantly.
  • The reaction rate will increase slightly.
  • Which of the following best describes the Michaelis constant (Km) for an enzyme?

  • The rate constant for the formation of the enzyme-substrate complex.
  • The maximum rate of the reaction catalyzed by the enzyme.
  • The concentration of substrate at which the enzyme is saturated. (correct)
  • The rate constant for the breakdown of the enzyme-substrate complex.
  • An enzyme can bind two different substrates, Substrate 1 and Substrate 2. The enzyme has a low Km for Substrate 1 and a high Km for Substrate 2. Under which of the following conditions would Substrate 2 be more likely to bind to the enzyme?

  • Low concentrations of Substrate 1 and high concentrations of Substrate 2. (correct)
  • High concentrations of both substrates.
  • Low concentrations of both substrates.
  • High concentrations of Substrate 1 and low concentrations of Substrate 2.
  • Which of the following scenarios would NOT result in a reaction being coupled to ATP hydrolysis?

    <p>A reaction with a negative Gibbs free energy change. (A)</p> Signup and view all the answers

    Which of the following accurately describes the relationship between saturated and unsaturated hydrocarbons in phospholipid tails and membrane fluidity?

    <p>Unsaturated hydrocarbons increase membrane fluidity, while saturated hydrocarbons decrease membrane fluidity. (C)</p> Signup and view all the answers

    What is the primary function of transaminases?

    <p>Transferring amino groups between molecules. (D)</p> Signup and view all the answers

    Which of the following is NOT a product of the esterification reaction that forms a triglyceride?

    <p>Glyceraldehyde (B)</p> Signup and view all the answers

    Which of the following best describes the type of reaction catalyzed by lyases?

    <p>Breaking down molecules by removing a group without hydrolysis. (C)</p> Signup and view all the answers

    Which of the following regulatory strategies is most likely to be influenced by pH changes?

    <p>Acid-Base Catalysis (B)</p> Signup and view all the answers

    Which of the following types of regulation is characterized by a molecule binding to an enzyme's active site, preventing the substrate from binding?

    <p>Competitive Inhibition (B)</p> Signup and view all the answers

    Which of the following is a characteristic of an enzyme that is regulated by homotropic allosteric regulation?

    <p>The effector molecule is ONLY the substrate. (B)</p> Signup and view all the answers

    Which of the following scenarios would result in an INCREASE in reaction rate for an enzyme under noncompetitive inhibition?

    <p>Increasing the concentration of the substrate. (D)</p> Signup and view all the answers

    Which of the following amino acids would be MOST likely to form a covalent bond with a substrate during an enzyme-catalyzed reaction?

    <p>Lysine (C)</p> Signup and view all the answers

    Which of the following functional groups is MOST likely to be involved in the formation of a hydrogen bond between an enzyme and its substrate?

    <p>Hydroxyl group (C)</p> Signup and view all the answers

    Which of the following statements accurately describes the relationship between Km and the efficiency of an enzymatic reaction?

    <p>A low Km indicates a high affinity of the enzyme for its substrate, leading to a more efficient reaction. (A)</p> Signup and view all the answers

    A reaction is coupled to ATP hydrolysis. What does this imply about the reaction's free energy change?

    <p>The reaction's free energy change is negative, indicating it is endergonic and releases energy. (C)</p> Signup and view all the answers

    Which of the following amino acids, when present in the center of a short polypeptide, would contribute most significantly to the polypeptide's isoelectric point (pI)?

    <p>Glutamic acid (C)</p> Signup and view all the answers

    Which of the following accurately describes an α-glycosidic bond?

    <p>A bond between two monosaccharides where the hemiacetal carbon of one sugar has different stereochemistry as the second sugar. (B)</p> Signup and view all the answers

    Identify the type of bond involved in the attachment of a monosaccharide to a protein residue involving oxygen.

    <p>O-linked glycosidic bond (A)</p> Signup and view all the answers

    Which of the following best describes the anticipated impact of a prolonged fever on enzyme activity?

    <p>Enzyme function may be adversely altered or suppressed due to the denaturation of proteins. (C)</p> Signup and view all the answers

    What is the rate limiting step of a metabolic pathway?

    <p>The step with the highest activation energy. (B)</p> Signup and view all the answers

    Which of the following statements best describes the concept of Km?

    <p>Km is the substrate concentration at which the reaction rate is half of its maximum. (A)</p> Signup and view all the answers

    Which of the following conditions would favor an efficient enzymatic reaction?

    <p>A high concentration of substrate and a low Km for the corresponding enzyme. (D)</p> Signup and view all the answers

    Which of the following describes the condition under which a reaction is capable of proceeding efficiently?

    <p>The corresponding enzyme has a low Km. (C)</p> Signup and view all the answers

    Which of the following options describes the metabolic alkalosis disorder in terms of its causes, resulting change, and compensation?

    <p>Cause: Dietary intake of too much bicarbonate (antacids)/too much acid from plasma; Resulting Change: Increased plasma bicarbonate; Compensation: Increased pCO2 (hypoventilation/decreased breathing rate) (B)</p> Signup and view all the answers

    Which of the following enzyme classification numbers represents a specific enzyme serial number?

    <p>4 (C)</p> Signup and view all the answers

    In the context of the provided content, which of the following is NOT a functional group that is important in biochemistry?

    <p>Methyl (D)</p> Signup and view all the answers

    The content highlights that the importance of acid-base balance is demonstrated in which of the following biological processes?

    <p>Regulation of breathing (A)</p> Signup and view all the answers

    Based on the exam breakdown provided, which of the following topics has the highest proportion of questions on the BMS 531 exam?

    <p>Acids and Bases (B)</p> Signup and view all the answers

    Which of the following enzyme classes is represented by the number "2" in the enzyme classification system?

    <p>Transferases (C)</p> Signup and view all the answers

    Flashcards

    Acidosis

    Accumulation of hydrogen ions in plasma, lowering pH.

    Alkalosis

    Decrease of hydrogen ions in plasma, raising pH.

    pCO2 Compensation

    Change in pCO2 in response to acid-base imbalances.

    Functional Groups

    Specific groups of atoms in organic molecules that determine behavior.

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    Enzyme Classification

    Classification system using a 4-digit number for enzymes.

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    Metabolic Acidosis Causes

    Inability to remove acid from plasma, such as kidney dysfunction.

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    Transferases

    Enzymes that catalyze the transfer of functional groups between molecules.

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    ATP Hydrolysis Coupling

    Process where ATP hydrolysis drives unfavorable reactions by coupling with them.

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    Factors Decreasing Membrane Fluidity

    Presence of saturated hydrocarbons in membrane lipids decreases fluidity.

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    Triglyceride Composition

    A triglyceride consists of three fatty acids bound to a glycerol molecule.

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    Esterification Result

    Esterification of fatty acids with glycerol produces water.

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    Low Km and Substrate Binding

    Enzymes with low Km have high affinity, ensuring reaction progress even at low substrate levels.

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    Competitive Binding Scenario

    Low substrate 1 allows high substrate 2 to bind more favorably in competitive binding.

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    Michaelis Constant (Km)

    Indicates substrate concentration at which reaction rate is half of its maximum.

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    Rate limiting step

    The slowest step in a reaction pathway that determines overall reaction rate.

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    Km (Michaelis constant)

    A measure of how efficiently an enzyme converts a substrate into a product.

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    Vmax

    The maximum rate of an enzymatic reaction when the enzyme is saturated with substrate.

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    α-glycosidic bond

    A type of covalent bond between monosaccharides with specific stereochemistry, differing at the hemiacetal carbon.

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    β-glycosidic bond

    A bond between monosaccharides where both have the same stereochemistry at the hemiacetal carbon.

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    N-linked glycosylation

    Attachment of a sugar molecule to a nitrogen atom in another molecule, often in proteins.

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    O-linked glycosylation

    Attachment of a sugar molecule to an oxygen atom in another molecule, such as a protein.

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    Impact of high fever on enzymes

    High temperatures can adversely affect enzyme activity or protein folding.

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    Enzyme activity increase

    Enzyme performance may improve with slight increases in temperature, enhancing metabolism.

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    Carbohydrate structure impact

    Fever may impair carbohydrates' structure and function, affecting metabolism.

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    Acid-Base Catalysis

    Catalysis that uses a partner to orient a substrate by donating or accepting protons.

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    Covalent Catalysis

    Catalysis involving partners like metal ions that form temporary bonds with substrates.

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    Competitive Inhibition

    Inhibition where an effector competes with the substrate for the active site.

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    Noncompetitive Inhibition

    Inhibition where an effector binds outside the active site, reducing enzyme activity regardless of substrate presence.

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    Allosteric Regulation

    Regulation where binding at a site other than the active site alters enzyme activity.

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    D Form Sugars

    Sugars with D configuration are more likely incorporated in human structures.

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    Study Notes

    Exam Breakdown

    • 54 total questions
    • BMS 531.01 Introduction: 4 questions
    • BMS 531.02 Amino Acids and Proteins: 9 questions
    • BMS 531.03 Carbohydrates and Lipids: 10 questions
    • BMS 531.04 Acids and Bases: 10 questions
    • BMS 531.05 Properties of Water: 6 questions
    • Calculations/Learning Activity: 6 questions
    • BMS 531.06 Enzymes: 9 questions
    • BMS 531.07 Bioenergetics: 8 questions

    Importance of Acid-Base Balance

    • Changes in pH influence biological processes, including breathing regulation
    • Acidosis: accumulation of hydrogen ions
    • Alkalosis: decrease of hydrogen ions
    • Metabolic acidosis: inability to remove acid from plasma (kidney dysfunction). Caused by too much acid-forming dietary intake.
    • Metabolic alkalosis: too much bicarbonate intake/acid from plasma.
    • Respiratory acidosis: hypoventilation (decreased breathing rate). Leads to increased pCO2
    • Respiratory alkalosis: hyperventilation (increased breathing rate). Leads to decreased pCO2

    Functional Groups

    • Amino
    • Carboxyl
    • Hydroxyl
    • Phosphate

    Enzyme Classification

    • Enzyme classification uses a 4-digit number system
    • Includes membership in one of six classes
    • Identifies substrate sub-classes
    • Includes a specific enzyme serial number
    • Numbers are underrepresented with respect to human genes.

    Energy Conservation through ATP Hydrolysis

    • Endergonic reactions are coupled with ATP hydrolysis to occur
    • ATP hydrolysis releases energy to drive endergonic reactions

    Lipids and Membrane Fluidity

    • Saturated hydrocarbons decrease membrane fluidity.
    • Unsaturated hydrocarbons in lipid tails decrease membrane fluidity.
    • A triglyceride is composed of three fatty acids bound to a glycerol molecule

    Km and Substrate Affinity

    • Low Km indicates high substrate affinity
    • Increasing substrate concentration increases reaction rate
    • Decreasing substrate concentration decreases reaction rate, reaction can still progress

    Enzyme Kinetics and Michaelis-Menten Equation

    • Michaelis constant: the corresponding concentration of substrate
    • Michaelis constant indicates the enzyme's affinity to substrate
    • Reaction efficiency depends on high substrate concentration
    • Low Km = efficient reaction at relatively low substrate concentrations.

    Structural Features of Amino Acids and Proteins

    • Amino acids with electrically charged hydrophilic side chains (Arg, His, Lys, Asp, Glu) are important to consider in protein center.

    Carbohydrate Structure

    • α-glycosidic bond: different stereochemistry of hemiacetal carbon.
    • β-glycosidic bond: same stereochemistry of hemiacetal carbon
    • N-linked: attachment to nitrogen residue
    • O-linked: attachment to oxygen residue

    Environmental Conditions and Enzyme Activity

    • High fever initially increases enzyme activity by increasing metabolic rate
    • Prolonged/excessive fever adversely affects enzyme function as protein folding may be affected. Also, enzyme function or carbohydrates structure may be affected

    Mechanisms of Enzyme Regulation

    • Acid-base catalysis: uses a partner to orient substrate
    • Covalent catalysis: involves partners like Fe, Cu, Zn, Mg, etc.
    • Metal-ion catalysis: Hydrogen bonds and ionic interactions orient substrate
    • Cofactor catalysis: donate or accept protons; generate strong bonds through amino acid side chains

    Enzyme Inhibition and Allosteric Regulation

    • Allosteric regulation: enzyme activity modulated by binding of an effector
    • Competitive inhibition: enzyme activity via adversarial binding within the active site
    • Noncompetitive inhibition: enzyme activity via binding external to active site

    Multiple Choice Questions

    • D-form sugar is more likely to be incorporated in human structure
    • L-form amino acid is likely attached to tRNA
    • Amino and carboxyl groups are involved in water creation during peptide synthesis
    • Phosphate and hydroxyl groups are involved in ribozyme catalyzed reaction products

    Buffering and Acid-Base

    • HA (protonated form) and A- (deprotonated form) are related to acid/conjugate base and protonation/deprotonation.

    Osmolarity and Water Flow

    • Hypertonic: water flows out of the cell
    • Isotonic: no net water movement
    • Hypotonic: water flows into the cell

    Additional Thoughts

    • Glycine loss affects substrate association and/or enzyme folding
    • Buffers are least efficient at their pI
    • Diabetes Insipidus (Central vs Nephrogenic) relates to ADH.

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    BMS 531 Block 1 Live Review PDF

    Description

    Test your knowledge on the essential concepts of acid-base balance within the context of BMS 531. This quiz covers questions related to pH regulation, metabolic and respiratory acidosis and alkalosis, and the foundational principles of amino acids, proteins, carbohydrates, and enzymes. Master the core content to excel in your understanding of biological processes.

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