Podcast
Questions and Answers
What is phylogeny?
What is phylogeny?
Evolutionary history of a species or group of species.
What is systematics?
What is systematics?
A discipline focused on classifying organisms and determining their evolutionary relationships.
What is taxonomy?
What is taxonomy?
The scientific study of how living things are classified.
What is a binomial?
What is a binomial?
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What defines a genus?
What defines a genus?
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What is the specific epithet?
What is the specific epithet?
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What is a family in taxonomic classification?
What is a family in taxonomic classification?
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What does the order represent in taxonomy?
What does the order represent in taxonomy?
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What is a class in taxonomic hierarchy?
What is a class in taxonomic hierarchy?
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What does phyla refer to?
What does phyla refer to?
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What are kingdoms in biological classification?
What are kingdoms in biological classification?
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What are the domains in biological classification?
What are the domains in biological classification?
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What is a taxon?
What is a taxon?
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What is a phylogenetic tree?
What is a phylogenetic tree?
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What are branch points in a phylogenetic tree?
What are branch points in a phylogenetic tree?
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Define sister taxa.
Define sister taxa.
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What does 'rooted' mean in the context of a phylogenetic tree?
What does 'rooted' mean in the context of a phylogenetic tree?
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What is a basal taxon?
What is a basal taxon?
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What is a polytomy?
What is a polytomy?
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Which is the basal taxon in the phylogeny shown?
Which is the basal taxon in the phylogeny shown?
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Which are sister taxa?
Which are sister taxa?
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What does this tree indicate about the evolutionary relationships between the cat, skunk, and wolf?
What does this tree indicate about the evolutionary relationships between the cat, skunk, and wolf?
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Which levels of classification do humans share with leopards?
Which levels of classification do humans share with leopards?
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Which tree depicted shows a different evolutionary history?
Which tree depicted shows a different evolutionary history?
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What is homology?
What is homology?
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What is analogy?
What is analogy?
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What are homoplasies?
What are homoplasies?
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Are a porcupine's quill and a cactus's spine homology or analogy?
Are a porcupine's quill and a cactus's spine homology or analogy?
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Are a cat's paw and a human's hand homology or analogy?
Are a cat's paw and a human's hand homology or analogy?
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Are an owl's wing and a hornet's wing homology or analogy?
Are an owl's wing and a hornet's wing homology or analogy?
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Suppose A and B have similar appearances but very divergent gene sequences, while B and C have different appearances but similar gene sequences. Which pair is more likely to be closely related?
Suppose A and B have similar appearances but very divergent gene sequences, while B and C have different appearances but similar gene sequences. Which pair is more likely to be closely related?
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What is cladistics?
What is cladistics?
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What are clades?
What are clades?
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Define monophyletic.
Define monophyletic.
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Define paraphyletic.
Define paraphyletic.
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What is a polyphyletic group?
What is a polyphyletic group?
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What is a shared ancestral character?
What is a shared ancestral character?
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What is a shared derived character?
What is a shared derived character?
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What is an outgroup?
What is an outgroup?
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What is an ingroup?
What is an ingroup?
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What is a character table in phylogenetics?
What is a character table in phylogenetics?
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What is maximum parsimony?
What is maximum parsimony?
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What is maximum likelihood?
What is maximum likelihood?
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What is the most basal taxon represented in this tree?
What is the most basal taxon represented in this tree?
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Would hair be a useful character to distinguish a particular clade of mammals within the clade of the class Mammalia?
Would hair be a useful character to distinguish a particular clade of mammals within the clade of the class Mammalia?
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What can make the most parsimonious tree inaccurate?
What can make the most parsimonious tree inaccurate?
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Define orthologous genes.
Define orthologous genes.
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Define paralogous genes.
Define paralogous genes.
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How can comparing proteins of two species yield data about their evolutionary relationships?
How can comparing proteins of two species yield data about their evolutionary relationships?
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Suggest a sequence that results in Gene A differing considerably between species, yet A and B show little divergence from each other.
Suggest a sequence that results in Gene A differing considerably between species, yet A and B show little divergence from each other.
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What is a molecular clock?
What is a molecular clock?
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What assumptions underlie the use of molecular clocks?
What assumptions underlie the use of molecular clocks?
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Explain how a molecular clock dating of two taxa could conflict with fossil evidence.
Explain how a molecular clock dating of two taxa could conflict with fossil evidence.
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What is horizontal gene transfer?
What is horizontal gene transfer?
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Why is the kingdom Monera not a valid taxon?
Why is the kingdom Monera not a valid taxon?
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Why can phylogenies based on different genes yield different branching patterns?
Why can phylogenies based on different genes yield different branching patterns?
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What does 'King Phillip Came Over for Great Soup' represent?
What does 'King Phillip Came Over for Great Soup' represent?
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Unless branch lengths are proportional to time or genetic change, a phylogenetic tree indicates only ________________.
Unless branch lengths are proportional to time or genetic change, a phylogenetic tree indicates only ________________.
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Much information can be learned about a species from its evolutionary history, thus ___________________________________________________
Much information can be learned about a species from its evolutionary history, thus ___________________________________________________
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Organisms with similar morphologies or DNA sequences are more likely to be more _______________ than organisms with very different structures and DNA sequences.
Organisms with similar morphologies or DNA sequences are more likely to be more _______________ than organisms with very different structures and DNA sequences.
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What is the purpose of computer programs in phylogenetics?
What is the purpose of computer programs in phylogenetics?
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What does it mean that humans and chimpanzees are sister species?
What does it mean that humans and chimpanzees are sister species?
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Why is it necessary to distinguish homology from analogy to infer phylogeny?
Why is it necessary to distinguish homology from analogy to infer phylogeny?
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Explain the logic of using shared derived characters to infer phylogeny.
Explain the logic of using shared derived characters to infer phylogeny.
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What is the main difference between Linnaean classification and phylogenetic trees?
What is the main difference between Linnaean classification and phylogenetic trees?
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Is it better to compare orthologous or paralogous genes when reconstructing phylogenies? Explain.
Is it better to compare orthologous or paralogous genes when reconstructing phylogenies? Explain.
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Molecular clocks suggest that the most common strain of HIV jumped from primates to humans in the early ____________.
Molecular clocks suggest that the most common strain of HIV jumped from primates to humans in the early ____________.
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Describe some assumptions and limitations of molecular clocks.
Describe some assumptions and limitations of molecular clocks.
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Phylogenies based on rRNA genes suggest that eukaryotes are more closely related to archaea, while data from some other genes suggest a relationship to ____________.
Phylogenies based on rRNA genes suggest that eukaryotes are more closely related to archaea, while data from some other genes suggest a relationship to ____________.
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What do genetic analyses indicate about horizontal gene transfer?
What do genetic analyses indicate about horizontal gene transfer?
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Why was the five-kingdom system abandoned for a three-domain system?
Why was the five-kingdom system abandoned for a three-domain system?
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In a comparison of birds/mammals, the condition of having 4 limbs is:
In a comparison of birds/mammals, the condition of having 4 limbs is:
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To apply parsimony in a phylogenetic tree, one must:
To apply parsimony in a phylogenetic tree, one must:
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In Figure 26.4, which similarly inclusive taxon descended from the same common ancestor as Canidae?
In Figure 26.4, which similarly inclusive taxon descended from the same common ancestor as Canidae?
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What type of group includes a shared ancestor with multiple descendant species?
What type of group includes a shared ancestor with multiple descendant species?
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Based on the tree below, which statement is incorrect?
Based on the tree below, which statement is incorrect?
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If you were using cladistics to make a phylogenetic tree of cats, which would be the best outgroup?
If you were using cladistics to make a phylogenetic tree of cats, which would be the best outgroup?
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What do the relative lengths of the frog and mouse branches in a tree indicate?
What do the relative lengths of the frog and mouse branches in a tree indicate?
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What is convergent evolution?
What is convergent evolution?
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What does divergent evolution entail?
What does divergent evolution entail?
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What does genome evolution show?
What does genome evolution show?
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What is the endosymbiotic theory?
What is the endosymbiotic theory?
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Study Notes
Phylogeny and Classification Terms
- Phylogeny: Describes the evolutionary history and relationships of species or groups.
- Systematics: Discipline that classifies organisms based on their evolutionary relationships.
- Taxonomy: Scientific study focused on classifying living things.
- Binomial Nomenclature: Two-part Latin name method, consisting of genus and specific epithet.
- Genus: A classification grouping of similar species.
- Specific Epithet: The second part of a scientific name.
- Family: A grouping of related genera.
- Order: A taxonomic category above family, grouping similar families.
- Classes: Taxonomic category above order.
- Phyla: Taxonomic category above class.
- Kingdoms: Six primary groups: Archaebacteria, Eubacteria, Protista, Fungi, Plantae, and Animalia.
- Domains: Three overarching groups: Bacteria, Archaea, Eukarya.
- Taxon: Any named grouping at any taxonomic level.
Phylogenetic Trees
- Phylogenetic Tree: A branching diagram representing evolutionary relationships.
- Branch Points: Indicates divergence of taxa from a common ancestor.
- Sister Taxa: Groups that share a common ancestor and are each other's closest relatives.
- Rooted Tree: Tree where branch point represents the most recent common ancestor of all taxa.
- Basal Taxon: Early diverging lineage from a common ancestor.
- Polytomy: Branch point where more than two descendant groups emerge.
Evolutionary Relationships
- Homology: Similar structures in species due to shared ancestry.
- Analogy: Similar traits due to convergent evolution, not common ancestry.
- Homoplasies: Structures that evolved independently with similar functions.
Molecular and Genetic Concepts
- Cladistics: Classification based on common ancestry.
- Clades: Groups including an ancestral species and all its descendants.
- Monophyletic: Group where all descendants come from one ancestor.
- Paraphyletic: Includes the ancestor and some, but not all, descendants.
- Polyphyletic: Group includes species from different ancestors.
- Ingroup: Study subject group.
- Outgroup: Species that diverged before the lineage being studied.
Techniques and Applications
- Character Table: Displays presence or absence of traits, used in cladistics.
- Parsimony Principle: Choose the simplest explanation or tree with the fewest changes.
- Molecular Clock: Estimates evolutionary time using genetic data.
- Horizontal Gene Transfer: Gene transfer across species, complicating phylogenies.
Evolutionary Patterns
- Convergent Evolution: Unrelated species develop similar features.
- Divergent Evolution: Related species become more different over time.
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Gene Types:
- Orthologous Genes: Homologs from speciation events present in different species.
- Paralogous Genes: Result from gene duplication within a species.
Phylogenetic Analysis Insights
- Importance of Homology: Essential for accurate phylogenetic inference.
- Eukaryotes and Archaea: Phylogenetic studies suggest closer relations between these groups compared to bacteria.
- Limitations of Molecular Clocks: Rate variation and natural selection can affect accuracy.
Evolving Classification Systems
- Shift from Five-Kingdom to Three-Domain System: Genetic data led to a better understanding of relationships, separating prokaryotes into distinct domains.
Miscellaneous
- Endosymbiotic Theory: Proposes that some organelles originated from prokaryotes living inside larger cells, forming mitochondria and chloroplasts.
- Mnemonic for Taxonomic Hierarchy: "King Phillip Came Over for Great Soup" helps remember Kingdom, Phylum, Class, Order, Family, Genus, Species.
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Description
Test your knowledge of phylogeny and classification in biological science. This quiz covers essential terms and concepts including systematics, taxonomy, and various taxonomic ranks. Prepare to delve into the structure of the tree of life and understand the relationships between different organisms.