Biological Molecules - Chapter 2 Outcomes
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Describe a test to identify the presence of non-reducing sugars.

A test to identify the presence of non-reducing sugars involves acid hydrolysis and Benedict's solution. The acid hydrolysis breaks down the non-reducing sugar into its constituent monosaccharides. Benedict's solution is then used to test for the presence of reducing sugar.

Describe the molecular structure of triglycerides, with reference to fatty acids (saturated and unsaturated), glycerol and the formation of ester bonds.

Triglycerides are composed of a glycerol molecule and three fatty acids. The glycerol molecule has three hydroxyl groups, each of which is attached to a fatty acid through an ester bond. Saturated fatty acids possess single bonds between carbon atoms in their hydrocarbon tails, while unsaturated fatty acids have one or more double bonds between carbons. The presence of double bonds in unsaturated fatty acids results in a kinked structure, contributing to their lower melting points compared to saturated fatty acids.

Describe the molecular structure of phospholipids with reference to their hydrophilic (polar) phosphate heads and hydrophobic (non-polar) fatty acid tails.

Phospholipids are composed of a glycerol molecule, two fatty acid tails, and a phosphate group. The phosphate group, attached to one end of the glycerol molecule, is hydrophilic (attracted to water) due to its polar nature. The fatty acid tails, on the other hand, are hydrophobic (repelled by water) due to their non-polar structure. This dual nature of phospholipids makes them essential components of cell membranes, allowing them to create a barrier between the intracellular and extracellular environments.

State that globular proteins are generally soluble and have physiological roles and fibrous proteins are generally insoluble and have structural roles.

<p>Globular proteins are generally water-soluble, adopting compact, folded structures. They primarily perform physiological roles, often functioning as enzymes, hormones, or transport carriers. In contrast, fibrous proteins have elongated, thread-like structures. Due to their extensive interactions within the structure, they are generally insoluble in water and are responsible for providing structural support in organisms, such as in hair, skin, and connective tissues.</p> Signup and view all the answers

Describe the structure of a molecule of haemoglobin as an example of a globular protein, including the formation of its quaternary structure from two alpha (a) chains (a-globin), two beta (β) chains (β-globin) and a haem group.

<p>Hemoglobin is a globular protein composed of four polypeptide chains: two alpha (a) chains and two beta (β) chains. Each chain is associated with a non-protein component called a heme group, which contains an iron atom. The heme group binds reversibly to oxygen molecules. The four chains interact through a variety of bonds, including hydrogen bonds and hydrophobic interactions, resulting in a compact, spherical quaternary structure. This quaternary structure is critical for hemoglobin's function as an oxygen transporter.</p> Signup and view all the answers

Relate the structure of haemoglobin to its function, including the importance of iron in the haem group.

<p>Hemoglobin's quaternary structure, with its multiple polypeptide chains and heme groups, enables a cooperative binding of oxygen molecules. When one oxygen molecule binds to the heme group of one chain, it induces a conformational change that makes it easier for other oxygen molecules to bind to the remaining heme groups. This cooperativity allows for efficient oxygen uptake in the lungs, where oxygen concentration is high, and release in tissues where oxygen concentration is low. The iron atom within the heme group is essential for oxygen binding. It acts as a central site for the reversible binding of oxygen molecules, ensuring that oxygen can be transported to the body's cells and released when needed.</p> Signup and view all the answers

Explain how hydrogen bonding occurs between water molecules and relate the properties of water to its roles in living organisms, limited to solvent action, high specific heat capacity and latent heat of vaporization.

<p>Water molecules are polar, with a partial positive charge on the hydrogen atoms and a partial negative charge on the oxygen atom. This polarity allows for the formation of hydrogen bonds between adjacent water molecules. Hydrogen bonds are responsible for water's high specific heat capacity, meaning that it takes a lot of heat to raise or lower its temperature. This feature contributes to the stability of the internal temperature of organisms. Due to its polar nature, water is also an excellent solvent, allowing dissolved substances to be transported throughout the organism. The high latent heat of vaporization requires a significant amount of heat to change liquid water into vapor, thus making it an effective coolant in processes such as sweating.</p> Signup and view all the answers

Describe the structure of a molecule of collagen as an example of a fibrous protein, and the arrangement of collagen molecules to form collagen fibres.

<p>Collagen is a fibrous protein composed of three polypeptide chains that are wound around each other, forming a triple helix structure. Each chain is approximately 1000 amino acids long. Hydrogen bonds between these chains and covalent bonds between the R groups of different collagen molecules contribute to the formation of collagen fibrils. Collagen fibrils further associate with each other to form thicker collagen fibers, providing strength and flexibility.</p> Signup and view all the answers

Relate the structures of collagen molecules and collagen fibres to their function.

<p>Collagen's triple helix structure, a result of the interweaving of three polypeptide chains, contributes to its high tensile strength and elasticity. The formation of collagen fibrils, where individual molecules are tightly packed together, further amplifies these properties. This robust structure is essential for providing structural support and elasticity to various tissues in the body, including skin, bone, tendons, and ligaments.</p> Signup and view all the answers

What are the functions of proteins?

<p>Proteins have a wide range of functions, playing crucial roles in virtually all biological processes. Some of their key functions include catalyzing metabolic reactions (enzymes), providing structural support (collagen), transporting molecules (hemoglobin), regulating cellular processes (hormones), and defending the body against foreign invaders (antibodies).</p> Signup and view all the answers

Describe the structure of an amino acid.

<p>An amino acid is composed of a central carbon atom bonded to four different groups: an amino group (-NH2), a carboxyl group (-COOH), a hydrogen atom (-H), and a side chain (R group). The R group varies between different amino acids, determining their unique properties and characteristics.</p> Signup and view all the answers

Describe the formation and breakage of a peptide bond.

<p>A peptide bond is formed through a condensation reaction between the carboxyl group of one amino acid and the amino group of another amino acid. This reaction releases a molecule of water. The peptide bond links amino acids together to form polypeptide chains. Peptide bond breakage occurs through hydrolysis, where a water molecule is added to the peptide bond, breaking it apart and releasing individual amino acids.</p> Signup and view all the answers

Explain the meaning of the terms primary structure, secondary structure, tertiary structure, and quaternary structure of proteins.

<p>The primary structure refers to the specific sequence of amino acids in a polypeptide chain. The secondary structure describes the local folding patterns of the polypeptide chain, often forming alpha helices or beta sheets. The tertiary structure represents the overall three-dimensional shape of a single polypeptide chain, determined by interactions between amino acids. The quaternary structure, only applicable to proteins composed of multiple polypeptide chains, describes the arrangement of these individual chains in space, forming a functional protein complex.</p> Signup and view all the answers

Explain the different types of interaction that hold protein molecules in shape: hydrophobic interactions, hydrogen bonding, ionic bonding, and covalent bonding (including disulfide bonds).

<p>Hydrophobic interactions arise from the tendency of non-polar amino acids to cluster together, minimizing their exposure to the aqueous environment. Hydrogen bonds form between polar amino acids that have partial charges on specific atoms. Ionic bonds occur between oppositely charged amino acids, while covalent bonds, including disulfide bonds, form strong connections between sulfur atoms within cysteine amino acid residues.</p> Signup and view all the answers

Describe the function of the Biuret Test for proteins.

<p>The Biuret Test is used to detect the presence of peptide bonds in proteins. The test solution, which contains copper ions in alkaline conditions, reacts with peptide bonds, resulting in a color change from blue to purple. This color change indicates the presence of proteins.</p> Signup and view all the answers

Describe the function of the emulsion test for lipids.

<p>The emulsion test is a simple method for detecting the presence of lipids. The test involves dissolving the sample in ethanol, which readily dissolves lipids. When this ethanol solution is mixed with water, lipids, if present, will precipitate out, forming a cloudy or milky emulsion. The appearance of this emulsion is indicative of the presence of lipids.</p> Signup and view all the answers

Describe the function of the iodine test for starch.

<p>The iodine test is a specific test for the presence of starch. When iodine solution, which is typically orange-brown, is added to a substance containing starch, it reacts with the starch molecules to form a blue-black complex. This color change is a positive indication of the presence of starch.</p> Signup and view all the answers

What is a prosthetic group?

<p>A prosthetic group is a non-protein component that is tightly bound to a protein molecule. It is essential for the protein's function and often contributes significant properties to the protein. Examples include the heme group in hemoglobin, which binds oxygen.</p> Signup and view all the answers

Which of the following is NOT a function of water in living organisms?

<p>Providing structural support</p> Signup and view all the answers

Which of the following correctly describes the relationship between the structure and function of proteins?

<p>The primary structure of a protein determines its shape, which in turn influences its function.</p> Signup and view all the answers

Which of the following is NOT a type of interaction that helps stabilize the tertiary structure of a protein?

<p>Phosphodiester bonding</p> Signup and view all the answers

Fibrous proteins are generally more soluble in water than globular proteins.

<p>False</p> Signup and view all the answers

The presence of double bonds in unsaturated fatty acids results in a straight, linear structure.

<p>False</p> Signup and view all the answers

Which of the following is a storage polysaccharide found in animals?

<p>Glycogen</p> Signup and view all the answers

Which of the following is a structural polysaccharide found in plants?

<p>Cellulose</p> Signup and view all the answers

What is the difference between saturated and unsaturated fatty acids?

<p>Saturated fatty acids have only single bonds between carbon atoms in their hydrocarbon tails, whereas unsaturated fatty acids have one or more double bonds between carbons. The presence of double bonds in unsaturated fatty acids creates a kink in the structure, resulting in lower melting points and greater fluidity compared to saturated fatty acids.</p> Signup and view all the answers

Which of the following is a non-reducing sugar?

<p>Sucrose</p> Signup and view all the answers

Which of the following tests is used to detect the presence of proteins?

<p>Biuret Test</p> Signup and view all the answers

Explain why water has a high specific heat capacity.

<p>Water's high specific heat capacity is due to the extensive hydrogen bonding between its molecules. Breaking these hydrogen bonds requires significant energy input, thus leading to a high specific heat capacity, which means a large amount of energy is required to raise or lower the temperature of water.</p> Signup and view all the answers

Why does water have a high latent heat of vaporization?

<p>Water's high latent heat of vaporization is also a consequence of hydrogen bonding. When water transitions from liquid to gas, these hydrogen bonds must be broken, requiring a significant amount of energy. This property makes water an effective coolant, as it absorbs substantial heat during the process of evaporation.</p> Signup and view all the answers

Describe why water is an effective solvent in biological systems?

<p>Water is an effective solvent due to its polar nature. Its oxygen atom carries a partial negative charge, while its hydrogen atoms carry a partial positive charge. This polarity allows water molecules to interact with charged ions and polar molecules, effectively dissolving them and transporting them throughout the organism.</p> Signup and view all the answers

Explain why ice is less dense than water and how this property affects aquatic life.

<p>Ice is less dense than water because of the hydrogen bonding structure. Water molecules in ice form a more open, crystalline structure, resulting in greater space between molecules and lower density. This property allows ice to float on water, forming an insulating layer on the surface of lakes and oceans. This layer prevents the water from freezing completely, protecting aquatic life underneath.</p> Signup and view all the answers

What is the difference between a 'dipole' and a 'hydrogen bond'?

<p>A dipole is a separation of charge within a molecule, creating a partial positive and a partial negative end. Hydrogen bonds are a specific type of attraction between a partially positive hydrogen atom and a partially negative atom, typically oxygen or nitrogen, on another molecule. Hydrogen bonds are often formed between molecules that have dipoles.</p> Signup and view all the answers

Study Notes

Biological Molecules - Chapter 2 Outcomes

  • Carbohydrates: Sugar polymers, molecules containing C, H, and O atoms (C6H12O6).
  • Monosaccharides: Simplest carbohydrates, including trioses, tetroses, pentoses, and hexoses. Examples include glucose, fructose, and galactose. Molecules often form rings.
  • Disaccharides: Formed by linking monosaccharides via glycosidic bonds. Examples include maltose (glucose + glucose), lactose (glucose + galactose), and sucrose (glucose + fructose).
  • Polysaccharides: Large molecules formed by linking many monosaccharides, used for energy storage and structural support. Examples include glycogen (animal storage) and starch (plant storage), and cellulose (plant cell walls).

Biological Molecules - Specific Characteristics

  • Glycogen: Animal energy storage polysaccharide, largely a-1,4 links, with branching a-1,6 links. Increased branching increases the rate of hydrolysis for use in respiration.
  • Starch: Plant energy storage, both amylose (linear, a-1,4 links) and amylopectin (branched, a-1,4 and a-1,6 links). Natural starches contain 10-20% amylose and 80-90% amylopectin on average
  • Cellulose: Plant structural polysaccharide with ß-1,4 links, chains are linear and tightly packed
  • Benedict's test: Identifying reducing sugars (e.g., glucose, fructose, and maltose) via color change (green → yellow → orange → brick red) in a heated solution. Sucrose (a non-reducing sugar) requires acid hydrolysis.

Lipids - Triglycerides and Phospholipids

  • Triglycerides: Made of glycerol + 3 fatty acids linked by ester bonds. Insoluble in water; energy storage molecules. Contain considerably more energy per gram than carbohydrates
  • Fatty acids: Long hydrocarbon chains, saturated (no C=C double bonds), unsaturated (≥1 C=C double bonds).
  • Phospholipids: Glycerol backbone + 2 fatty acids + 1 phosphate group. Critical components of cell membranes, hydrophilic (polar) heads and hydrophobic (non-polar) tails.
  • Lipids: Include triglycerides and phospholipids; molecules contain C, H, and O atoms, with a very small proportion of O. Insoluble in water.

Proteins - Amino Acids and Peptides

  • Proteins: Large molecules built from chains of amino acids. Crucial for many bodily functions: enzymes, cell membranes, hormones, and more.
  • Amino acids: Fundamental building blocks of proteins. Have an amino group (-NH2), a carboxyl group (-COOH), and a unique side chain ('R' group). 20 naturally occurring amino acids.
  • Peptide bonds: Link amino acids together through condensation reactions, forming dipeptides and polypeptides.
  • Protein structure:
    • Primary: The sequence of amino acids, very crucial for everything else
    • Secondary: Folding patterns (a-helix and ß-pleated sheet), stabilized by hydrogen bonds.
    • Tertiary: 3D structure of the entire polypeptide chain, resulting from interactions between R groups including hydrogen bonds, disulfide bonds, ionic bonds, and hydrophobic interactions. This is where the protein's specific function happens
    • Quaternary: Multiple polypeptide chains joined together, with complex interactions (e.g., haemoglobin – 4 chains)
  • Globular proteins (e.g., haemoglobin): Soluble, diverse functions (transport, enzyme catalysis); folded into compact, spherical shapes.
  • Fibrous proteins (e.g., collagen): Insoluble, structural roles; long, fibrous shapes that form filaments and tissues.

Tests for Biological Molecules

  • Benedict's test: for reducing sugars
  • Iodine test: for starch (positive = blue-black)
  • Biuret test: for proteins (positive = purple)
  • Emulsion test: for lipids (positive = milky emulsion)

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Explore the key concepts of carbohydrates in Chapter 2 of Biological Molecules. This quiz covers monosaccharides, disaccharides, and polysaccharides, including their structures and functions. Test your understanding of energy storage and the characteristics of various sugar molecules.

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