Organic Chemistry I Lecture Notes PDF

ORGANIC CHEMISTRY I Lec. 2+3 By Dr. Noor Muneer (PhD. Pharmaceutical Chemistry) 1 ⚫ Hydrocarbons: Hydrocarbons are organic compounds contain only two elements, hydrogen and carbon. On the basis of structure, hydr...

ORGANIC CHEMISTRY I Lec. 2+3 By Dr. Noor Muneer (PhD. Pharmaceutical Chemistry) 1 ⚫ Hydrocarbons: Hydrocarbons are organic compounds contain only two elements, hydrogen and carbon. On the basis of structure, hydrocarbons are divided into two main classes, aliphatic and aromatic. Aliphatic hydrocarbons are further divided into families: alkanes, alkenes, alkynes, and their cyclic analogs (cycloalkanes, etc.). The simplest member of the alkane family and one of the simplest of all organic compounds is methane (CH4). When carbon is bonded to four other atoms, its bonding orbitals (sp3 orbitals) are directed to the corners of a tetrahedron. This tetrahedral arrangement is the one that permits the orbitals to be as far apart as possible. For each of these orbitals to overlap most effectively the spherical s orbital of a hydrogen atom, and thus to form the strongest bond, each hydrogen nucleus must be located at a corner of this tetrahedron  Next in size after methane is ethane (C2H6). If we connect the atoms of this molecule by covalent bonds, we arrive at the structure. Since each carbon atom is bonded to four other atoms, its bonding orbitals (sp3 orbitals) are directed toward the corners of a tetrahedron. As in the case of methane, the carbon-hydrogen bonds result from overlap of these sp3 orbitals with the s orbitals of the hydrogens. The carbon-carbon bond arises from overlap of two sp3 orbitals, the bonds are given the same name, σ bonds (sigma bonds). Free rotation about the carbon-carbon single bond. Conformations. Torsional strain: We could have an arrangement like I in which the hydrogens exactly oppose each other, an arrangement like II in which the hydrogens are perfectly staggered, or an infinity of intermediate arrangements Different arrangements of atoms that can be converted into one another by rotation about carbon-carbon single bonds are called conformations. I is called the eclipsed, conformation; II is called the staggered conformation. (The infinity of intermediate conformations are called skew conformations.) The highly useful representations of the kind are called Newman projections. The potential energy of the molecule is at a minimum for the staggered conformation, increases with rotation, and reaches a maximum at the eclipsed conformation. Most ethane molecules, naturally, exist in the most stable, staggered conformation The energy required to rotate the ethane molecule about the carbon- carbon bond is called torsional energy. The relative instability of the eclipsed conformation or any of the intermediate skew conformations is being due to torsional strain. Propane and the butanes: The next member of the alkane family is propane (C3H8). Again following the rule of one bond per hydrogen and four bonds per carbon. Here, rotation can occur about two carbon-carbon bonds, and again is essentially free. Although the methyl group is considerably larger than hydrogen, the rotational barrier (3.3 kcal/mole) is only a little higher than for ethane and the rotational barrier is due chiefly to the same factor as the barrier in ethane: torsional strain. When we consider butane (C4H10), we find that there are two possible structures as shown below, n-Butane has a four-carbon chain and isobutane has a three-carbon chain with a one-carbon branch. These two substances are different compounds, since they show definite differences in their physical and chemical properties Conformations of n-butane. Van der Waals repulsion: The n-butane molecule similar to ethane, but with a methyl group replacing one hydrogen on each carbon. As with ethane, staggered conformations have lower torsional energies and hence are more stable than eclipsed conformations. But, due to the presence of the methyl groups, two new points are encountered here: first, there are several different staggered conformations; and second, a factor besides torsional strain comes into play to affect conformational stabilities. There is the anti-conformation, I, in which the methyl groups are as far apart as they can be (dihedral angle 180o). There are two gauche conformations, II and III, in which the methyl groups are only 60o apart The anti-conformation has been found more stable (by 0.8 kcal/mole) than the gauche. Both are free of torsional strain. But in a gauche conformation, the methyl groups are crowded together, under these conditions, van der Waals forces are repulsive and raise the energy of the conformation. We say that there is van der Waals repulsion (or steric repulsion) between the methyl groups, and that the molecule is less stable because of van der Waals strain (or steric strain). Higher alkanes. The homologous series: We see that butane contains one carbon and two hydrogens more than propane, which in turn contains one carbon and two hydrogens more than ethane, and so on. A series of compounds in which each member differs from the next member by a constant amount is called a homologous series, and the members of the series are called homologs. The family of alkanes forms such a homologous series, the constant difference between successive members being CH2. We also notice that in each of these alkanes the number of hydrogen atoms equals two more than twice the number of carbon atoms, so that we may write as a general formula for members of this series, CnH2n+2. In agreement with this general formula, we find that the next alkane, pentane, has the formula C5H12, followed by hexane C6H14, heptane C7H16, and so on. We would expect that, as the number of atoms increases, so does the number of possible arrangements of those atoms. Nomenclature: We have seen that the names methane, ethane, propane, butane, and pentane are used for alkanes containing respectively one, two, three, four, and five carbon atoms. Except for the first four members of the family, the name is simply derived from the Greek (or Latin) prefix for the particular number of carbons in the alkane; thus pentane for five, hexane for six, heptane for seven, octane for eight, nonane for nine and decane for ten. But nearly every alkane can have a number of isomeric structures, and there must be an unambiguous name for each of these isomers. The butanes and pentanes are distinguished by the use of prefixes: n-butane and isobutane; n-pentane, isopentane, and neopentane. Alkyl groups: We have seen that chloromethane, CH3C1, is also known as methyl chloride. The CH3 group is called methyl wherever it appears, CH3Br being methyl bromide, CH3I methyl iodide, and CH3OH methyl alcohol. In an analogous way, the C2H5 group is ethyl; C3H7 propyl; C4H9 butyl and so on. These groups are named simply by dropping -ane from the name of the corresponding alkane and replacing it by -yl. They are known collectively as alkyl groups. The general formula for an alkyl group is CnH2n+1, since it contains one less hydrogen than the parent alkane, CnH2n+2. Among the alkyl groups we again encounter the problem of isomerism. There is only one methyl chloride or ethyl chloride, and correspondingly only one methyl group or ethyl group. We can see, however, that there are two propylchlorides. I and II, and hence that there must be two propyl groups. These groups both contain the propane chain, but differ in the point of attachment of the chlorine; they are called n-propyl and isopropyl We can distinguish the two chlorides by the names n-propyl chloride and isopropyl chloride. We find that there are four butyl groups, two derived from the straight chain (n-butane), and two derived from the branched chain (isobutane). These are given the designations n- (normal), sec- (secondary), iso-, and tert- (tertiary), as shown below. Again the difference between n-butyl and sec-butyl and between isobutyl and tert-butyl lies in the point of attachment of the alkyl group to the rest of the molecule. The prefix n- is used to designate any alkyl group in which all carbons form a single continuous chain and in which the point of attachment is the very end carbon. For example: The prefix iso- is used to designate any alkyl group (of six carbons or less) that has a single one-carbon branch on the next-to-last carbon of a chain and has the point of attachment at the opposite end of the chain. For example: Common names of alkanes: As we have seen, the prefixes n-, iso-, and neo- are adequate to differentiate the various butanes and pentanes, but beyond this point an impracticable number of prefixes would be required. However, the prefix n- has been retained for any alkane, no matter how large, in which all carbons form a continuous chain with no branching: An isoalkane is a compound of six carbons or less in which all carbons except one form a continuous chain and that one carbon is attached to the next-to-end carbon  In naming any other of the higher alkanes, we make use of the IUPAC system. IUPAC names of alkanes: The system of nomenclature that could be used for even the most complicated compounds is known as the IUPAC system (International Union of Pure and Applied Chemistry). Essentially the rules of the IUPAC system are: 1. Select as the parent structure the longest continuous chain, and then consider the compound to have been derived from this structure by the replacement of hydrogen by various alkyl groups. Isobutane (I) can be considered to arise from propane by the replacement of a hydrogen atom by a methyl group, and thus may be named methylpropane 2. Where necessary, as in the isomeric methylpentanes (II and III), indicate by a number the carbon to which the alkyl group is attached. 3. In numbering the parent carbon chain, start at whichever end results in the use of the lowest numbers; thus II is called 2-methylpentane rather than 4- methylpentane 4. If the same alkyl group occurs more than once as a side chain, indicate this by the prefix di-, tri-, tetra-, etc., to show how many of these alkyl groups there are, and indicate by various numbers the positions of each group, as in 2,2,4- trimethylpentane (IV). 5. If there are several different alkyl groups attached to the parent chain, name them in order of increasing size or in alphabetical order; as in 4-methyl- 3,3- diethyl-5-isopropyloctane (V). Classes of carbon atoms and hydrogen atoms: It has been found extremely useful to classify each carbon atom of an alkane with respect to the number of other carbon atoms to which it is attached. A primary (1o) carbon atom is attached to only one other carbon atom; a secondary (2o) is attached to two others; and a tertiary (3o) to three others. For example: Each hydrogen atom is similarly classified, being given the same designation of primary, secondary, or tertiary as the carbon atom to which it is attached Physical properties: The boiling points and melting points rise as the number of carbons increases. The processes of boiling and melting require overcoming the intermolecular forces of a liquid and a solid; the boiling points and melting points rise because these intermolecular forces increase as the molecules get larger. The first four n-alkanes are gases, the next 13 (C5- C17) are liquids, and those- containing 18 carbons or more are solids. The alkanes are soluble in non-polar solvents such as benzene, ether, and chloroform, and are insoluble in water and other highly polar solvents. Considered themselves as solvents, the liquid alkanes dissolve compounds of low polarity and do not dissolve compounds of high polarity. Preparation of alkanes: In some of these equations, the symbol R is used to represent any alkyl group. The most important of these methods is the hydrogenation of alkencs. When shaken under a slight pressure of hydrogen gas in the presence of a small amount of catalyst, alkenes are converted smoothly and quantitatively into alkanes of the same carbon skeleton. Reduction of an alkyl halide, either via the Grignard reagent or directly with metal and acid, involves simply the replacement of a halogen atom by a hydrogen atom; the carbon skeleton remains intact. This method has about the same applicability as the previous method, the hydrogenation of alkenes would probably be preferred because of its simplicity and higher yield The Grignard reagent: an organometallic compound: When a solution of an alkyl halide in dry ethyl ether, (C2H5)2O, is allowed to stand over turnings of metallic magnesium, a vigorous reaction takes place. The resulting solution is known as a Grignard reagent, It is one of the most useful and versatile reagents known to the organic chemist The Grignard reagent has the general formula RMgX, and the general name alkyl magnesium halide. The magnesium becomes bonded to the same carbon that previously held halogen, the n-propyl chloride yields n-propyl magnesium chloride, and isopropyl chloride yields isopropyl magnesium chloride.