chapt18 Origin and History of Life Lecture Notes 2023 (2).pdf

Title Chapter 18 Origin and History of Life Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 1  Chapter Outli...

Title Chapter 18 Origin and History of Life Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 1  Chapter Outline 18.1 Origin of Life 18.2 History of life 18.3 Geological Factors that influence Evolution 2  Outcomes 18.1 Origin of Life 1) List and describe the four stages of the origin of life. 2) Critically discuss the hypotheses on the evolution of monomers 3) Critically discuss the hypotheses on the evolution of polymers 4) Critically discuss the hypotheses on the evolution of protocells 5) Critically discuss the hypotheses on the evolution of living cells 2  18.1 Origin of Life 1. The principle of common ancestry states that all life on Earth can be traced back to a single ancestor, the last universal common ancestor (LUCA). 2. All living things: (chapter 1 link) a. Acquire energy through metabolism. b. Respond and interact with their environment. c. Self-replicate. d. Are subject to the forces of natural selection that drive adaptation to the environment 2 3. The molecules of living things are called biomolecules and are organic. a. The four stages of the origin of life are: i. Organic monomers ii. Organic polymers iii. Protocells iv. Living cells 3 3. a The four stages of the origin of life are: i) Organic monomers : simple organic molecules (monomers ) evolved from inorganic compounds (example : amino acids) ii) Organic polymers : organic monomers form bonds to form organic polymers: polymerization (Proteins/DNA) iii) Protocells: polymers enclosed in a membrane iv) Living cells: acquired the ability to self- replicate: origin of genetic code 3 Fig. 18.1 Stages of the origin of life 4  a. The four stages of the origin of life are: i. Organic monomers ii. Organic polymers iii. Protocells iv. Living cells 5  The Early Earth (Background) 1. Sun and planets formed over a 10 billion year period from dust particles and debris. 2. 4,6 billion years ago the solar system was in place 3. Heavier atoms of iron and nickel became the molten liquid core; Dense silicate minerals became the semiliquid mantle; and Upwellings of volcanic lava produced the first crust. 6 7  The Early Earth (Background) 4. Mass of earth big enough for strong enough gravitation to have an atmosphere. 5.Early atmosphere: Reducing atmosphere with little free oxygen. WHY NB? 6.Water vapor (dense thick clouds)→ condensed to liquid water → rain began to fall → oceans produced 7. Distance from sun important 8  A. Stage 1. Evolution of Monomers 1.There are three hypotheses that explain how organic monomers could have evolved. 2. Hypothesis one: monomers came from reactions in the atmosphere. a. Oparin/Haldane independently suggested organic molecules could be formed in the presence of outside energy sources (?) using atmospheric gases. (remember: very little oxygen) Oxidation-reduction reactions 9 i. Their hypothesis is sometimes called the “primordial soup” hypothesis. ii.The reducing atmosphere of early Earth could have driven abiotic synthesis of organic monomers from inorganic molecules. b.Experiments performed by Miller and Urey (1953) showed experimentally that these gases (methane, ammonia, hydrogen, water vapor) reacted with one another to produce small organic molecules (amino acids, organic acids). 10 Fig. 18.2 11 3.Hypothesis two: monomers came from reactions in ocean thermal vents. a. Günter Wächtershäuser came up with the iron- sulphur world hypothesis in the late 1980s. b. The ocean’s thermal vents have iron and nickel sulphide minerals present, and the vents emit gases such as carbon monoxide, ammonia, and hydrogen sulphide. 12 c. The iron and nickel sulphide act as catalysts that drive the chemical evolution from inorganic to organic molecules. (nitrogen gas vs ammonia ? read text book) 13 4. Hypothesis three: monomers came from outer space. a. Comets and meteorites, perhaps carrying organic chemicals, have pelted the Earth throughout history. b. A meteorite from Mars (ALH84001) that landed on Earth 13,000 years ago, may have fossilized bacteria. 14 15 Fig. 18.1 16  B. Stage 2. Evolution of Polymers 1. Hypothesis one: iron-sulphur world hypothesis a. Wächtershäuser and Huber formed peptides using iron-nickel sulphides under vent-like conditions. b. Such minerals have a charged surface that attracts amino acids and provides electrons so they bond together. 17  2. Hypothesis two: Protein-first hypothesis a. Sidney Fox demonstrated amino acids polymerize abiotically if exposed to dry heat. b. Amino acids could have collected in shallow puddles along the rocky shore and then formed proteinoids (i.e., small polypeptides that have some catalytic properties) from the heat of the sun.. 18 c. When proteinoids are placed in water, they form cell-like microspheres composed of protein d. This assumes DNA genes came after protein enzymes; DNA replication needs protein enzymes. 19 3. Hypothesis three: RNA-first hypothesis a. Only the macromolecule RNA was needed at the beginning to lead to the first cell. b. Thomas Cech and Sidney Altman discovered that RNA can be both a substrate and an enzyme. c. RNA would carry out processes of life associated with DNA (in genes) and protein enzymes. Some viruses today have RNA genes. d. Supporters of this hypothesis label 4 BYA an “RNA world.” 20 Fig. 18.1 21  C. Stage 3. Evolution of Protocells 1. Before the first true cell arose, there would have been a protocell or protobiont. 2. The Plasma Membrane: Fig 18.4 micelle: a single layer of fatty acids (how organized?) assemble into small spheres. vesicles: bigger and bilayer of fatty acids 22 Fig. 18.4 26 Fig. 18.5 27 3. Sidney Fox showed that if lipids are made available to microspheres, lipids become associated with microspheres (?) producing a lipid-protein membrane 22 4. Oparin demonstrated a protocell could have developed from coacervate droplets. a. Coacervate droplets are complex spherical units that spontaneously form when concentrated mixtures of macromolecules are held in the right temperature, ionic composition, and pH. b. Coacervate droplets absorb and incorporate various substances from the surrounding solution. 23 5. Aleg Bangham discovered that lipids would naturally organize themselves into double-layered bubbles, known as liposomes. 6. David Deamer and Bangham thought liposomes provided life’s first membranous boundary, and suggested the membrane-first hypothesis. 24 a. The membrane-first hypothesis states that the first cell had to have a plasma membrane before any of its other parts. c. In a liquid environment, phospholipid molecules spontaneously form liposomes: spheres surrounded by a layer of phospholipids; this supports the membrane- first hypothesis. d. A protocell could have contained only RNA to function as both genetic material and enzymes (remember!). 25 7. Nutrition: If a protocell was a heterotrophic fermenter living on the organic molecules in the organic soup that was its environment, this would indicate heterotrophs preceded autotrophs. a. A heterotroph is an organism that cannot synthesize organic compounds from inorganic substances and therefore must take in preformed organic compounds. b. An autotroph is an organism that makes organic molecules from inorganic nutrients. 28 8.If the protocell evolved at hydrothermal vents, it would be chemosynthetic and autotrophs would have preceded heterotrophs. 9.The first protocells may have used preformed ATP, but as supplies dwindled, natural selection would favor cells that could extract energy from carbohydrates to transform ADP to ATP. 29 10. Since glycolysis is a common metabolic pathway in living things, it evolved early in the history of life. 11. As there was no free O2, it is assumed that protocells carried on a form of fermentation. 12.The first protocells had a limited ability to break down organic molecules; it took millions of years for glycolysis to evolve completely. 30 Fig. 18.1 31 D. Stage 4. Evolution of a Self- Replication System 1.In living systems, information flows from DNA → RNA → protein; it is possible that this sequence developed in stages. 32 2. The RNA-first hypothesis suggests that the first genes and enzymes were RNA molecules. a. These genes would have directed and carried out protein synthesis. b. Ribozymes are RNA that acts as enzymes. c. Some viruses contain RNA genes with a protein enzyme called reverse transcriptase (later!) that uses RNA as a template to form DNA; this could have given rise to the first DNA. 33 3. The protein-first hypothesis contends that proteins or at least polypeptides were the first to arise. a. Only after the protocell develops complex enzymes could it form nucleic acids from small molecules. b. Because a nucleic acid is complicated, the chance that it arose on its own is minimal. c.Therefore, enzymes are needed to guide the synthesis of nucleotides and then nucleic acids. 34 4. Cairns-Smith suggests that polypeptides and RNA evolved simultaneously. a. The first true cell would contain RNA genes that replicated because of the presence of proteins; they become associated in clay in such a way that the polypeptides catalyzed RNA formation. b. This eliminates the chicken-and-egg paradox; both events happen at the same time. 35  5. Once the protocell was capable of reproduction, it became a true cell and biological evolution began. a. After DNA formed, the genetic code still had to evolve to store information. b. Because the current code is subject to fewer errors than other possible codes, and because it minimizes mutations, it likely underwent a natural selection process 36 Fig. 18.1 37  Outcomes 18.2 History of Life 1) Explain the process of relative and absolute dating of fossils 2) List three sources of evidence that supports the endo-symbiotic theory of organelle evolution. 3) Discuss when and where the first multicellular organisms evolved 4) Describe some of the major evolutionary events on earth (no detail) 38  18.2 History of Life A. Fossils Tell a Story 1. A fossil is the remains or traces of past life, usually preserved in sedimentary rock. 2. Most dead organisms are consumed by scavengers or decompose. 3.Paleontology is the study of fossils and the history of life, ancient climates, and environments. 38 4. Sedimentation has been going on since the Earth was formed; it is an accumulation of particles that vary in size (sediment) forming a stratum, a recognizable layer in a stratigraphic sequence 5. The sequence indicates the age of fossils; a stratum is older than the one above it and younger than the one below it. 39 40 6. Relative Dating of Fossils a. Strata of the same age in England and Russia may have different sediments. b. However, geologists discovered that strata of the same age contain the same fossils, termed index fossils. c. Therefore, fossils can be used for the relative dating of strata. d. A particular species of fossil ammonite is found over a wide range and for a limited time period; therefore, all strata in the world that contain this ammonite are of the same age. 41 7. Absolute Dating of Fossils a. Absolute dating relies on radioactive dating, or radiometric techniques, to determine the actual age of fossils. b. Radioactive isotopes have a half-life, the time it takes for half of a radioactive isotope to change into a stable element. c. Carbon 14 (14C) is a radioactive isotope contained within organic matter. i. Half of the 14C will change to nitrogen 14 (14N) every 5,730 years. ii. Comparing 14C radioactivity of a fossil to modern organic matter calculates the age of the fossil. 42 Fig. 18.8 The Tree of Life 5 B. Geologic Timescale Geologists have devised the geologic timescale, which divides the history of the Earth into eras, and then periods and epochs. 7 Table 18.1 33 2. Life arose in the Precambrian Era. a. The Precambrian encompasses 87% of the geologic timescale. b. Early bacteria probably resembled the archaea that live in hot springs today. c. 3.8 BYA, the first chemical fingerprints of complex cells occur; at 3.46 BYA, photosynthetic prokaryotic (?) cells appear. 8 d. Boulders called stromatolites from this early time resemble living stromatolites with cyanobacteria on the outer surface. Read e. Oxygen-releasing photosynthesis by cyanobacteria in stromatolites caused the atmosphere to become oxidizing rather than reducing. f. By 2 BYA, oxygen levels were high enough that anaerobic prokaryotes were declining. 9 10 g. Accumulation of O2 caused extinction of anaerobic organisms and the rise of aerobic organisms. h.O2 forms ozone or O3 in the upper atmosphere, contributing to the ozone shield and blocking ultraviolet radiation from reaching the Earth’s surface; this allowed organisms to live on land. Read; important 11 Table 18.1 33 3. Eukaryotic Cells Arise a. The eukaryotic cell, which arose 2.1 BYA, is always: aerobic and contains a nucleus and organelles b. Nucleus and endomembrane system (?): invaginations of plasma membrane c. Chloroplasts (plastids) and mitochondria: endosymbiosis 12 Fig. 18.8 1) First cell (s) give rise to 2) bacteria and 3) archaea ; 4) first eukaryotic cell evolves from archaea. 5) heterotrophic protists (gain mitochondria?); 6) photosynthetic protists (gain chloroplasts?); 7) animals and fungi from 5) and plants from 6) 6 b.The endosymbiotic theory states that a nucleated cell engulfed prokaryotes, which then became organelles. Evidence includes: i. Present-day mitochondria and chloroplasts have a size that lies within the range of that for bacteria. ii. Mitochondria and chloroplasts have their own DNA and make some of their own proteins. iii. Mitochondria and chloroplasts divide by binary fission similar to bacteria. iv. The outer membrane of mitochondria and chloroplasts differ from inner membrane 2X 13 14 Fig. 18.8 1) First cell (s) give rise to 2) bacteria and 3) archaea ; 4) first eukaryotic cell evolves from archaea. 5) heterotrophic protists (gain mitochondria?); 6) photosynthetic protists (gain chloroplasts?); 7)animals and fungi from 5) and plants from 6) Protists ? 6 Table 18.1 33 4 Multicellularity Arises a. It is not known exactly when multicellular organisms appeared; they would have been microscopic. b. Separating germ cells from somatic cells may have contributed to the diversity of organisms. c. Fossils of the Ediacara Hills of South Australia, from about 600-545 MYA, were soft-bodied early invertebrates. i. These bizarre animals lived on mudflats in shallow marine waters. ii. They lacked internal organs and could have absorbed nutrients from the sea. 15 16 Table 18.1 33 D. The Paleozoic Era 1. The Paleozoic Era lasted over 300 million years and was a very active period with three major mass extinctions. a. An extinction is the total disappearance of a species or higher taxonomic group. b. Mass extinction is the disappearance of large numbers of species or higher groups in a short geological time, just a few million years 17 2. Cambrian Animals a. The Cambrian Period saw invertebrates flourish; invertebrates lack a vertebral column. b. Today’s invertebrates all trace their ancestry to the Cambrian Period, and possibly earlier. c. Cambrian seafloors were dominated by trilobites, now extinct, that had armored exoskeletons. d. A skeleton may have been due to the increased pressures of predation. 18 19 Table 18.1 33  3. Invasion of Land a. Life first began to move out of the ocean and onto land around 500 MYA. b.In the Silurian Period, vascular plants invaded land and later flourished in warm swamps in the Carboniferous Period. c.Spiders, centipedes, mites and millipedes all preceded the appearance of insects on land. d.The appearance of wings on insects in the Carboniferous Period allowed insects to radiate into a diverse group. 20 21 e The vertebrate line of descent began in the early Ordovician Period. f. The Devonian Period is called the Age of Fishes and saw jawless and then jawed fishes, including both cartilaginous and ray-finned fishes. h. The Carboniferous Period was an age of coal- forming forests with an abundance of club mosses, horsetails, and ferns. i. It is called the “Age of the Amphibians” because amphibians diversified at this time. ii. Early vascular plants and amphibians were larger and more abundant during the Carboniferous Period;. 22 23 E. The Mesozoic Era 1. Although there was a mass extinction at the end of the Paleozoic, evolution of some plants and animals continued into the Triassic, the first period of the Mesozoic Era. 2. The Triassic period a. Gymnosperms flourished, especially cycads; the Triassic and Jurassic are called the “Age of Cycads.” 24 25 b. Reptiles, originating in the Permian, underwent adaptive radiation. c. One group of reptiles, the therapsids, had mammalian skeletal traits. 26 27 Table 18.1 33  3. The Jurassic Period a.Many dinosaurs flourished in the sea, on land, and in air. b.Controversy surrounds dinosaurs being ectothermic or endothermic. 4. The Cretaceous Period a. The era of dinosaurs ended in a mass extinction in which dinosaurs, most reptiles, and many marine organisms perished. 28 F. The Cenozoic Era 2. During the Cenozoic Era, mammals with hair and mammary glands diversified and human evolution began. 3. Mammalian Diversification a. During the Paleocene Epoch, mammals were small and resembled rats. b. In the Eocene Epoch, all of the modern orders of mammals had developed. c. Many of the types of herbivores and carnivores of the Oligocene Epoch are extinct today. 29 Table 18.1 33  4 Evolution of Primates a. Flowering plants were diverse and plentiful by the Cenozoic Era; primates were adapted to living in flowering trees. b.The first primates were small squirrel-like animals; from them evolved the first monkeys and apes. c. Apes diversified during the Miocene and Pliocene Epochs; this includes the first hominids, the group that includes humans. 30 31 d. During the Tertiary Period, the world’s climate cooled with the last two epochs known as the Ice Age. e. The Pleistocene Epoch saw many large sloths, beavers, wolves, bison, woolly rhinoceroses, mastodons, and mammoths; modern humans arose and may have contributed to extinction. 32 Table 18.1 33  Outcomes 18.3 Geological Factors That Influence Evolution 1. Explain continental drift and provide evidence in support of this theory. 2. Describe plate tectonics and how it explain the drifting of the continents. 3. Discuss the periods of mass extinctions that have occurred throughout history 34 18.3 Geological Factors That Influence Evolution A. Continental Drift 1. Earth’s crust is dynamic, not immobile as was once thought. 2. In 1920, German meteorologist Alfred Wegener presented data from across disciplines supporting continental drift. 3. Continental drift was confirmed in the 1960s; the continents moved with respect to one another 34 Fig. 18.16 35 4. During the Permian Period, the continents were joined to form one supercontinent called Pangaea which later divided into Gondwana and Laurasia and then split to form today’s configuration. 5. Continental drift explains why the coastlines of several continents (e.g., the outline of the west coast of Africa and that of the east coast of South America) are mirror images of each other. 6. The same geological structures (e.g., mountain ranges) are found in many areas where continents once touched. 36 7. Continental drift explains unique distribution patterns of several fossils (e.g., species of the seed fern Glossopteris). 8. Continental drift also explains why some fossils (e.g., reptiles Cynognathus and Lystrosaurus) are found on different continents. 9. Continental drift also explains why Australia, South America, and Africa have distinctive mammals; current mammalian biological diversity is the result of isolated evolution on separate continents. 37 Fig. 18.17 42 B. Plate Tectonics 1. Plate tectonics is the study of the behavior of the Earth’s crust in terms of moving plates that are formed at ocean ridges and destroyed at subduction zones. 2. Ocean ridges are ridges on ocean floors where oceanic crust forms; regions in oceanic crust where where molten rock rises and material is added to the ocean floor result in seafloor spreading. Also: continent-to-continent rifting (such as Africa's East African Rift ),= Divergent boundaries 38 3. Subduction zones are regions where oceanic crust collides with continental crust, causing the oceanic crust to descend into the mantle where it is melted. 4. Where the ocean floor is at the leading edge of a plate, a deep trench forms bordered by volcanoes or volcanic island chains.=Convergent b. 5. Two continents colliding form a mountain range (e.g., the Himalayas are the result of the collision of India and Eurasia).= Convergent b. 6. Transform boundaries are regions where two plates meet and scrape past one another resulting in relatively frequent earthquakes (San Andreas fault) 39 C. Mass Extinctions 1. Five mass extinctions occurred at the ends of the Ordovician, Devonian, Permian, Triassic, and Cretaceous periods. 2. Mass extinctions have been attributed to bolides or tectonic, oceanic, and climatic changes. 40 Fig. 18.18 43