Microbial Nutrition, Ecology, and Growth Lecture Notes PDF

Chapter 7 Microbial Nutrition, Ecology, and Growth Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Microbial Nutrition Nutrition – process by which chemical substa...

Chapter 7 Microbial Nutrition, Ecology, and Growth Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Microbial Nutrition Nutrition – process by which chemical substances (nutrients) are acquired from the environment and used in cellular activities Essential nutrients – must be provided to an organism Two categories of essential nutrients: – Macronutrients – required in large quantities; play principal roles in cell structure and metabolism Proteins, carbohydrates – Micronutrients or trace elements – required in small amounts; involved in enzyme function and maintenance of protein structure Manganese, zinc, nickel 2 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  3 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Nutrients Organic nutrients – contain carbon and hydrogen atoms and are usually the products of living things – Methane (CH4), carbohydrates, lipids, proteins, and nucleic acids Inorganic nutrients – atom or molecule that contains a combination of atoms other than carbon and hydrogen – Metals and their salts (magnesium sulfate, ferric nitrate, sodium phosphate), gases (oxygen, carbon dioxide) and water 4 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Chemical Analysis of Cell Contents 70% water Proteins 96% of cell is composed of 6 elements: – Carbon – Hydrogen – Oxygen – Phosphorous – Sulfur – Nitrogen 5 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Essential Biological Nutrients 6 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Sources of Essential Nutrients Carbon sources Heterotroph – must obtain carbon in an organic form made by other living organisms such as proteins, carbohydrates, lipids, and nucleic acids Autotroph – an organism that uses CO2, an inorganic gas as its carbon source – Not nutritionally dependent on other living things 7 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Growth Factors: Essential Organic Nutrients Organic compounds that cannot be synthesized by an organism because they lack the genetic and metabolic mechanisms to synthesize them Growth factors must be provided as a nutrient – Essential amino acids, vitamins 8 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Nutritional Types Main determinants of nutritional type are: – Carbon source – heterotroph, autotroph – Energy source Chemotroph – gain energy from chemical compounds Phototrophs – gain energy through photosynthesis 9 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Nutritional Categories 10 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Autotrophs and Their Energy Sources Photoautotrophs – Oxygenic photosynthesis – Anoxygenic photosynthesis Chemoautotrophs (lithoautotrophs) survive totally on inorganic substances Methanogens, a kind of chemoautotroph, produce methane gas under anaerobic conditions 11 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Heterotrophs and Their Energy Sources Majority are chemoheterotrophs – Aerobic respiration Two categories – Saprobes: free-living microorganisms that feed on organic detritus from dead organisms Opportunistic pathogen Facultative parasite – Parasites: derive nutrients from host Pathogens Some are obligate parasites 12 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: If an organism is degrading large organic molecules to get both carbon and energy, it would be best described as a A. Photoheterotroph B. Photoautotroph C. Chemoheterotroph D. Chemoautotroph 13 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: If an organism is degrading large organic molecules to get both carbon and energy, it would be best described as a A. Photoheterotroph B. Photoautotroph C. Chemoheterotroph D. Chemoautotroph 14 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Transport: Movement of Chemicals Across the Cell Membrane Passive transport – does not require energy; substances exist in a gradient and move from areas of higher concentration toward areas of lower concentration – Diffusion – Osmosis – diffusion of water – Facilitated diffusion – requires a carrier Active transport – requires energy and carrier proteins; gradient independent – Active transport – Group translocation – transported molecule chemically altered – Bulk transport – endocytosis, exocytosis, pinocytosis 15 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Diffusion – Net Movement of Molecules Down Their Concentration Gradient (Passive Transport) Copyright © McGraw-Hill Education. Permission required for reproduction or display. How Molecules Diffuse in Aqueous Solutions 16 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Osmosis - Diffusion of Water (Passive Transport) Copyright © McGraw-Hill Education. Permission required for reproduction or display. Glass Membrane sac Solute tube with solution Water Container with water Pore a. Inset shows a close-up of the osmotic process. b. As the H2O diffuses into the sac, the volume c. Even as the solution becomes diluted, there The gradient goes from the outer container increases and forces the excess solution into will still be osmosis into the sac. Equilibrium (higher concentration of H2O) to the sac (lower the tube, which will rise continually. will not occur because the solutions can never concentration of H2O). Some water will diffuse become equal. (Why?) the opposite direction but the net gradient favors osmosis into the sac. 17 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Response to solutions of different osmotic content 18 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Facilitated Diffusion (Passive Transport) 19 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Carrier Mediated Active Transport 20 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Endocytosis: Eating and Drinking by Cells Endocytosis: bringing substances into the cell through a vesicle or phagosome – Phagocytosis ingests substances or cells – Pinocytosis ingests liquids 21 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Summary of Transport Processes 22 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: If a cell is in a concentrated glucose solution and the glucose is moving into the cell through a carrier protein, this would be an example of A. Diffusion B. Facilitated Diffusion C. Active Transport D. Endocytosis E. Pinocytosis 23 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: If a cell is in a concentrated glucose solution and the glucose is moving into the cell through a carrier protein, this would be an example of A. Diffusion B. Facilitated Diffusion C. Active Transport D. Endocytosis E. Pinocytosis 24 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Environmental Factors That Influence Microbes Niche: totality of adaptations organisms make to their habitat Environmental factors affect the function of metabolic enzymes Factors include: – Temperature – Oxygen requirements – pH – Osmotic pressure – Barometric pressure 25 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  3 Cardinal Temperatures Minimum temperature – lowest temperature that permits a microbe’s growth and metabolism Maximum temperature – highest temperature that permits a microbe’s growth and metabolism Optimum temperature – promotes the fastest rate of growth and metabolism 26 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  3 Temperature Adaptation Groups Psychrophiles – optimum temperature below 15oC; capable of growth at 0oC Mesophiles – optimum temperature 20o-40oC; most human pathogens Thermophiles – optimum temperature greater than 45oC 27 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Gas Requirements Oxygen As oxygen is utilized it is transformed into several toxic products: – Singlet oxygen (1O2), superoxide ion (O2-), peroxide (H2O2), and hydroxyl radicals (OH-) Most cells have developed enzymes that neutralize these chemicals: – Superoxide dismutase, catalase If a microbe is not capable of dealing with toxic oxygen, it is forced to live in oxygen free habitats 28 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Categories of Oxygen Requirement Aerobe – utilizes oxygen and can detoxify it Obligate aerobe – cannot grow without oxygen Facultative anaerobe – utilizes oxygen but can also grow in its absence Microaerophilic – requires only a small amount of oxygen Anaerobe – does not utilize oxygen Obligate anaerobe – lacks the enzymes to detoxify oxygen so cannot survive in an oxygen environment Aerotolerant anaerobes – do not utilize oxygen but can survive and grow in its presence 29 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Culturing by Oxygen Requirement Copyright © McGraw-Hill Education. Permission required for reproduction or display. Copyright © McGraw-Hill Education. Permission required for reproduction or display. Photo by Keith Weller, USDA/ARS 30 © Terese M. Barta, Ph.D. Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Carbon Dioxide Requirement All microbes require some carbon dioxide in their metabolism Capnophile – grows best at higher CO2 tensions than normally present in the atmosphere Copyright © McGraw-Hill Education. Permission required for reproduction or display. Courtesy and © Becton, Dickinson and Company 31 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Effects of pH Majority of microorganisms grow at a pH between 6 and 8 (neutrophiles) Acidophiles – grow at extreme acid pH Alkalinophiles – grow at extreme alkaline pH 32 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Osmotic Pressure Most microbes exist under hypotonic or isotonic conditions Halophiles – require a high concentration of salt Osmotolerant – do not require high concentration of solute but can tolerate it when it occurs Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. 33  Other Environmental Factors Barophiles – can survive under extreme pressure and will rupture if exposed to normal atmospheric pressure 34 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: Chlamydomonas nivalis grows on Alaskan glaciers and it’s photosynthetic pigments give the snow a red crust. This organism would be best described as a Copyright © McGraw-Hill Education. Permission required for reproduction or display. A. Psychrophile B. Alkalinophile C. Microaerophile D. Osmotolerant E. Barophile Image courtesy Nozomu Takeuchi 35 Image courtesy Nozomu Takeuchi (a) (b) Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: Chlamydomonas nivalis grows on Alaskan glaciers and it’s photosynthetic pigments give the snow a red crust. This organism would be best described as a Copyright © McGraw-Hill Education. Permission required for reproduction or display. A. Psychrophile B. Alkalinophile C. Microaerophile D. Osmotolerant E. Barophile 36 Image courtesy Nozomu Takeuchi Image courtesy Nozomu Takeuchi (a) (b) Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Ecological Associations Among Microorganisms Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Microbial Associations Symbiotic Nonsymbiotic Organisms live in close Organisms are free-living; nutritional relationships; relationships not required required by one or both members. for survival. Mutualism Commensalism Parasitism Synergism Antagonism Obligatory, The commensal Parasite is Members Some members dependent; benefits; dependent cooperate are inhibited both members other member and benefits; and share or destroyed benefit. not harmed. host harmed. nutrients. by others. 37 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Ecological Associations Symbiotic – two organisms live together in a close partnership – Mutualism – obligatory, dependent; both members benefit – Commensalism – commensal member benefits, other member neither harmed nor benefited – Parasitism – parasite is dependent and benefits; host is harmed 38 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Ecological Associations Symbiosis 39 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Ecological Associations Non-symbiotic – organisms are free-living; relationships not required for survival – Synergism – members cooperate to produce a result that none of them could do alone – Antagonism – actions of one organism affect the success or survival of others in the same community (competition) Antibiosis 40 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  41 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Interrelationships Between Microbes and Humans Human body is a rich habitat for symbiotic bacteria, fungi, and a few protozoa - normal microbial flora Commensal, parasitic, and synergistic relationships 42 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Microbial Biofilms Biofilms result when organisms attach to a substrate by some form of extracellular matrix that binds them together in complex organized layers Dominate the structure of most natural environments on earth Communicate and cooperate in the formation and function of biofilms – quorum sensing 43 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Biofilm Formation and Quorum Sensing 44 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  The Study of Microbial Growth Microbial growth occurs at two levels: growth at a cellular level with increase in size, and increase in population Division of bacterial cells occurs mainly through binary fission (transverse) – Parent cell enlarges, duplicates its chromosome, and forms a central transverse septum dividing the cell into two daughter cells 45 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Binary Fission 46 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Rate of Population Growth Time required for a complete fission cycle is called the generation, or doubling time Each new fission cycle increases the population by a factor of 2 – exponential growth Generation times vary from minutes to days 47 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Rate of Population Growth Equation for calculating population size over time: n Nƒ = (Ni)2 Nƒ is total number of cells in the population Ni is starting number of cells Exponent n denotes generation time 2n number of cells in that generation 48 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: Escherichia coli has a doubling time of 20 minutes. If there are 5 cells at the beginning of the experiment, how many will there be in 3 hours? 49 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Concept Check: Escherichia coli has a doubling time of 20 minutes. If there are 5 cells at the beginning of the experiment, how many will there be in 3 hours? 45 50 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  Viable Plate Count 51 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  The Population Growth Curve In laboratory studies, populations typically display a predictable pattern over time – growth curve Stages in the normal growth curve: 1. Lag phase – “flat” period of adjustment, enlargement; little growth 52 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  The Population Growth Curve Stages in the normal growth curve: 1. Lag phase 2. Exponential growth phase – a period of maximum growth will continue as long as cells have adequate nutrients and a favorable environment 53 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  The Population Growth Curve Stages in the normal growth curve: 1. Lag phase 2. Exponential growth phase 3. Stationary phase – rate of cell growth equals rate of cell death caused by depleted nutrients and O 2, excretion of organic acids and pollutants 54 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.  The Population Growth Curve Stages in the normal growth curve: 1. Lag phase 2. Exponential growth phase 3. Stationary phase 4. Death phase – as limiting factors intensify, cells die exponentially 55 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Methods of Analyzing Population Growth Turbidometry – most simple Degree of cloudiness, turbidity, reflects the relative population size 56 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Methods of Analyzing Population Growth Enumeration of bacteria: – Viable colony count – Direct cell count – count all cells present; automated or manual Copyright © McGraw-Hill Education. Permission required for reproduction or display. 57 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education. Methods of Analyzing Population Growth Direct cell count – count all cells present; automated or manual 58 Copyright © McGraw-Hill Education. All rights reserved. No reproduction or distribution without the prior written consent of McGraw-Hill Education.