Podcast
Questions and Answers
What is the primary role of the 5-methyl modification of C in DNA?
What is the primary role of the 5-methyl modification of C in DNA?
- It prevents proteins from binding to DNA.
- It enhances the base pairing with G.
- It recruits proteins that promote gene expression.
- It is recognized by proteins that recruit HDAcs for gene repression. (correct)
How does the 5-methyl modification of cytosine influence gene expression?
How does the 5-methyl modification of cytosine influence gene expression?
- It enhances transcriptional activity.
- It ensures continued repression of gene expression. (correct)
- It inhibits the formation of RNA polymerase complexes.
- It leads to increased demethylation of DNA.
Which base does the modified cytosine pair with?
Which base does the modified cytosine pair with?
- Thymine
- Uracil
- Adenine
- Guanine (correct)
What type of enzymes are recruited by proteins that bind to methylated DNA?
What type of enzymes are recruited by proteins that bind to methylated DNA?
What is the potential consequence of the 5-methyl modification of C when DNA is replicated?
What is the potential consequence of the 5-methyl modification of C when DNA is replicated?
What is the main purpose of recombinant DNA technology?
What is the main purpose of recombinant DNA technology?
How does genetic engineering differ from recombinant DNA technology?
How does genetic engineering differ from recombinant DNA technology?
Which of the following describes synthetic biology?
Which of the following describes synthetic biology?
What is one of the key functions of Taq DNA polymerase?
What is one of the key functions of Taq DNA polymerase?
Which process is involved in generating recombinant DNA molecules?
Which process is involved in generating recombinant DNA molecules?
What is the primary purpose of cloning vectors in recombinant DNA technology?
What is the primary purpose of cloning vectors in recombinant DNA technology?
How is DNA gel electrophoresis primarily used in molecular biology?
How is DNA gel electrophoresis primarily used in molecular biology?
Which of the following is a potential application of genetic engineering?
Which of the following is a potential application of genetic engineering?
What is a primary function of modern plasmid vectors?
What is a primary function of modern plasmid vectors?
What is the role of a polylinker or multiple cloning site in plasmid vectors?
What is the role of a polylinker or multiple cloning site in plasmid vectors?
How do restriction enzymes function in DNA cloning?
How do restriction enzymes function in DNA cloning?
What is the purpose of an inducible bacterial promoter in plasmid vectors?
What is the purpose of an inducible bacterial promoter in plasmid vectors?
Why are restriction enzymes important to bacteria?
Why are restriction enzymes important to bacteria?
Which feature is commonly NOT found in modern plasmid vectors?
Which feature is commonly NOT found in modern plasmid vectors?
What enzymatic group do restriction endonucleases belong to?
What enzymatic group do restriction endonucleases belong to?
In the context of DNA cloning, what do recombination enzymes do?
In the context of DNA cloning, what do recombination enzymes do?
What is the role of the LacI repressor in the absence of lactose?
What is the role of the LacI repressor in the absence of lactose?
In which condition is the lac operon efficiently transcribed?
In which condition is the lac operon efficiently transcribed?
What happens in the presence of both glucose and lactose?
What happens in the presence of both glucose and lactose?
Which of the following is true about the lac operon in the absence of lactose?
Which of the following is true about the lac operon in the absence of lactose?
What occurs to the lac operon when glucose is present and lactose is absent?
What occurs to the lac operon when glucose is present and lactose is absent?
Which of the following factors increases the recruitment of RNA polymerase to the lacP promoter?
Which of the following factors increases the recruitment of RNA polymerase to the lacP promoter?
What phenotype is exhibited by lacZ-, lacY-, lacP-, and lacIs mutations?
What phenotype is exhibited by lacZ-, lacY-, lacP-, and lacIs mutations?
Which protein is associated with the activation of transcription for the lac operon in the presence of lactose?
Which protein is associated with the activation of transcription for the lac operon in the presence of lactose?
What is the primary effect of the acetylation of histone tails on gene expression?
What is the primary effect of the acetylation of histone tails on gene expression?
Which process allows for heritable changes in gene expression without altering the DNA sequence?
Which process allows for heritable changes in gene expression without altering the DNA sequence?
What happens to the X chromosome inactivation during early embryonic development in females?
What happens to the X chromosome inactivation during early embryonic development in females?
What role does DNA methylation play in gene expression?
What role does DNA methylation play in gene expression?
What best describes an organism with female X chromosome inactivation?
What best describes an organism with female X chromosome inactivation?
Which is a characteristic of epigenetic modifications?
Which is a characteristic of epigenetic modifications?
What is a common method of stable modification of DNA that leads to gene regulation?
What is a common method of stable modification of DNA that leads to gene regulation?
Which of the following statements about epigenetic inheritance is true?
Which of the following statements about epigenetic inheritance is true?
How is the migration of DNA molecules in an electric field related to their size?
How is the migration of DNA molecules in an electric field related to their size?
What role do fluorescent dyes, like ethidium bromide, play in DNA analysis?
What role do fluorescent dyes, like ethidium bromide, play in DNA analysis?
In agarose gel electrophoresis, how do small DNA molecules behave compared to larger ones?
In agarose gel electrophoresis, how do small DNA molecules behave compared to larger ones?
What factors primarily influence the migration speed of DNA in an electric field?
What factors primarily influence the migration speed of DNA in an electric field?
Why is agarose gel electrophoresis a widely used technique for DNA analysis?
Why is agarose gel electrophoresis a widely used technique for DNA analysis?
Which statement about the mobility of DNA fragments during electrophoresis is correct?
Which statement about the mobility of DNA fragments during electrophoresis is correct?
Which factors can affect the separation of DNA molecules in agarose gel electrophoresis?
Which factors can affect the separation of DNA molecules in agarose gel electrophoresis?
What is the primary advantage of using fluorescent DNA intercalators in DNA analysis?
What is the primary advantage of using fluorescent DNA intercalators in DNA analysis?
Flashcards
lacZ- mutation
lacZ- mutation
A mutation in the lacZ gene, preventing the production of the enzyme beta-galactosidase.
lacY- mutation
lacY- mutation
A mutation in the lacY gene, preventing the production of lactose permease, a protein responsible for transporting lactose into the cell.
lacP- mutation
lacP- mutation
A mutation in the lacP promoter, disrupting the binding site for RNA polymerase, resulting in reduced transcription of the lac operon.
lacIs mutation
lacIs mutation
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Lac operon regulation: No lactose
Lac operon regulation: No lactose
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Lac operon regulation: Glucose and lactose
Lac operon regulation: Glucose and lactose
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Lac operon regulation: Lactose and no glucose
Lac operon regulation: Lactose and no glucose
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Lac operon: Inducible expression
Lac operon: Inducible expression
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5-methylcytosine (5mC)
5-methylcytosine (5mC)
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Methyl-binding Proteins
Methyl-binding Proteins
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Base Pairing of 5mC
Base Pairing of 5mC
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Histone Deacetylases (HDACs)
Histone Deacetylases (HDACs)
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Gene Repression
Gene Repression
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Recombinant DNA technology
Recombinant DNA technology
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Agarose Gel Electrophoresis
Agarose Gel Electrophoresis
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Genetic engineering
Genetic engineering
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Fluorescent DNA Intercalator
Fluorescent DNA Intercalator
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Size Standard
Size Standard
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Synthetic biology
Synthetic biology
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Restriction enzymes
Restriction enzymes
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Insert
Insert
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Cloning vector
Cloning vector
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Vector
Vector
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DNA cloning
DNA cloning
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DNA Cloning
DNA Cloning
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DNA gel electrophoresis
DNA gel electrophoresis
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Recombinant DNA
Recombinant DNA
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Polymerase chain reaction (PCR)
Polymerase chain reaction (PCR)
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DNA Transformation
DNA Transformation
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Histone Acetylation
Histone Acetylation
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DNA Methylation
DNA Methylation
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Epigenetics
Epigenetics
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Transcription Factors
Transcription Factors
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Heterochromatin
Heterochromatin
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Euchromatin
Euchromatin
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X Chromosome Inactivation
X Chromosome Inactivation
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Mosaic Pattern (in females)
Mosaic Pattern (in females)
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Plasmid Vector
Plasmid Vector
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Origin of Replication (ori)
Origin of Replication (ori)
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Selection Marker
Selection Marker
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Multiple Cloning Site (MCS)
Multiple Cloning Site (MCS)
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Promoter
Promoter
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Recombination
Recombination
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Study Notes
DNA Cloning
- DNA cloning is a set of molecular tools used to locate, isolate, alter, amplify, or study DNA segments.
- Genetic engineering is the application of recombinant DNA technology to solve problems in biology, medicine, veterinary medicine, agriculture, and other areas.
- Synthetic biology designs complex, biologically based systems that exhibit functions not found in nature.
- Hot springs in Yellowstone National Park are the source of Taq DNA polymerase.
Overview of Molecular Genetics (Lecture 21)
- Molecular genetics lectures cover mutations, DNA repair, the dynamic genome, transcription, DNA replication, regulation (in bacteria and eukaryotes), DNA cloning techniques, the genetic code, protein synthesis, genomics, and the human genome.
- Mutations can be studied in relation to DNA repair.
- Transcription, regulation, and translation relate to the central dogma of gene expression.
- DNA cloning is a specific area of molecular genetics.
The Lac Operon of E. coli
- The lac operon contains genes for enzymes that metabolize lactose.
- When lactose is absent, the lac repressor binds to the operator, preventing transcription.
- With lactose present and glucose absent, the rate of synthesis of the three enzymes increases about 1,000-fold within 2-3 minutes. This is called induction.
- ß-galactosidase hydrolyzes lactose.
- Lactose permease transports lactose into the cell.
- Transacetylase modifies lactose.
Constitutive and Uninducible Lac Operon Mutations
- Constitutive mutants express the lac operon even without lactose.
- Uninducible mutants fail to express the lac operon even with lactose present.
- Mutations in various genes (lacZ, lacy, lacl, laco, lacP) can result in constitutive or uninducible phenotypes.
Transcriptional Regulation of the Lac Operon
- The lac operon is regulated by the presence or absence of lactose and glucose.
- In the absence of lactose, the lac repressor binds the operator to prevent transcription.
- In the presence of lactose, allolactose acts as an inducer for the lac operon.
- In the presence of glucose and lactose, cAMP + CAP bind.
Cis-acting Regulatory Sequences in Eukaryotic Genes
- There are three major classes of cis-regulatory sequences in eukaryotic protein-coding genes: promoters, promoter-proximal elements, enhancers, and silencers.
- Enhancers and silencers are located upstream or downstream of the promoter.
- Enhancers increase transcription, silencers reduce transcription.
The Problem with Chromatin
- Eukaryotic DNA is packaged tightly into chromatin.
- Euchromatin is open chromatin, genes in euchromatin are transcribed.
- Heterochromatin is condensed chromatin, genes in heterochromatin are silenced.
- Chromatin remodeling can expose genes for transcription.
Chromatin Remodeling Protein
- Even in open chromatin, a promoter might be inaccessible to RNA polymerase II if the TATA box happens to be tightly bound to a nucleosome.
- Chromatin remodeling complexes displace nucleosomes.
Histone Tail Acetylation and Methylation
- Acetylation occurs on lysine residues. Acetylated histones lead to open chromatin.
- Deacetylation leads to inactive chromatin..
- Methylation occurs on cytosine.
- Methylated DNA is often associated with repressed gene expression.
Epigenetic Inheritance
- Heritable modification in gene function or expression that does not alter the base sequence of DNA.
- Epigenetic states can be inherited through mitosis and meiosis.
- X chromosome inactivation is an example of epigenetic inheritance.
Parental Imprinting
- Some autosomal genes are systematically silenced during gametogenesis, so only the paternal copy is expressed in the progeny.
Recombinant DNA Technology
- Recombinant DNA technology is a suite of molecular tools used for locating, isolating, altering, amplifying, or studying DNA segments.
Cloning Vectors
- Cloning vectors are stable, self-replicating DNA molecules.
- They typically contain an origin of replication, selectable markers, and unique cloning sites.
- Plasmids and bacteriophage vectors are common cloning vectors.
- Plasmids are small, circular extrachromosomal DNA molecules.
- Cosmids are used to insert large DNA fragments.
- BACs are similar to plasmids in several ways.
- YACs can encompass even larger inserts.
Restriction Enzymes
- Restriction enzymes recognize specific DNA sequences and cut the DNA at those sites in a process called restriction digestion.
- Restriction enzymes can generate blunt ends or sticky ends.
- Compatible sticky ends allow fragments to be joined together.
PCR
- PCR is a method for rapidly amplifying small DNA fragments.
- It uses a heat-stable DNA polymerase (e.g., Taq polymerase).
- It involves repeated cycles of heating and cooling to denature and anneal DNA strands and extend the primers.
Gel Electrophoresis
- Gel electrophoresis separates DNA molecules based on their size and charge.
- DNA fragments are separated in an agarose or polyacrylamide gel.
- Fluorescent dyes are used to visualize DNA fragments.
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