Molecular Genetics Lecture 21

Choose a study mode

Play Quiz
Study Flashcards
Spaced Repetition
Chat to Lesson

Podcast

Play an AI-generated podcast conversation about this lesson
Download our mobile app to listen on the go
Get App

Questions and Answers

What is the primary role of the 5-methyl modification of C in DNA?

  • It prevents proteins from binding to DNA.
  • It enhances the base pairing with G.
  • It recruits proteins that promote gene expression.
  • It is recognized by proteins that recruit HDAcs for gene repression. (correct)

How does the 5-methyl modification of cytosine influence gene expression?

  • It enhances transcriptional activity.
  • It ensures continued repression of gene expression. (correct)
  • It inhibits the formation of RNA polymerase complexes.
  • It leads to increased demethylation of DNA.

Which base does the modified cytosine pair with?

  • Thymine
  • Uracil
  • Adenine
  • Guanine (correct)

What type of enzymes are recruited by proteins that bind to methylated DNA?

<p>Histone deacetylases (HDAcs) (C)</p> Signup and view all the answers

What is the potential consequence of the 5-methyl modification of C when DNA is replicated?

<p>It does not alter the normal DNA replication process. (B)</p> Signup and view all the answers

What is the main purpose of recombinant DNA technology?

<p>To locate, isolate, alter, and amplify DNA segments (D)</p> Signup and view all the answers

How does genetic engineering differ from recombinant DNA technology?

<p>Genetic engineering is a practical application of recombinant DNA technology (D)</p> Signup and view all the answers

Which of the following describes synthetic biology?

<p>The engineering of biological systems to create new functions (D)</p> Signup and view all the answers

What is one of the key functions of Taq DNA polymerase?

<p>It is essential for DNA replication at high temperatures (D)</p> Signup and view all the answers

Which process is involved in generating recombinant DNA molecules?

<p>Restriction enzyme digestion (A)</p> Signup and view all the answers

What is the primary purpose of cloning vectors in recombinant DNA technology?

<p>To introduce foreign DNA into host cells (C)</p> Signup and view all the answers

How is DNA gel electrophoresis primarily used in molecular biology?

<p>To visualize and separate DNA fragments based on size (C)</p> Signup and view all the answers

Which of the following is a potential application of genetic engineering?

<p>Creating crops resistant to pests (B)</p> Signup and view all the answers

What is a primary function of modern plasmid vectors?

<p>To provide resistance to antibiotic ampicillin (D)</p> Signup and view all the answers

What is the role of a polylinker or multiple cloning site in plasmid vectors?

<p>To provide unique restriction sites for enzymes (D)</p> Signup and view all the answers

How do restriction enzymes function in DNA cloning?

<p>They cut DNA at specific sites (B)</p> Signup and view all the answers

What is the purpose of an inducible bacterial promoter in plasmid vectors?

<p>To control gene expression in response to an inducer (D)</p> Signup and view all the answers

Why are restriction enzymes important to bacteria?

<p>They protect bacteria from viruses and foreign DNA (A)</p> Signup and view all the answers

Which feature is commonly NOT found in modern plasmid vectors?

<p>Introns from mammalian DNA (A)</p> Signup and view all the answers

What enzymatic group do restriction endonucleases belong to?

<p>DNAses (D)</p> Signup and view all the answers

In the context of DNA cloning, what do recombination enzymes do?

<p>Facilitate the combination of DNA fragments (C)</p> Signup and view all the answers

What is the role of the LacI repressor in the absence of lactose?

<p>It binds to the lacO operator to prevent transcription. (B)</p> Signup and view all the answers

In which condition is the lac operon efficiently transcribed?

<p>In the presence of lactose and absence of glucose. (A)</p> Signup and view all the answers

What happens in the presence of both glucose and lactose?

<p>LacI does not bind to lacO, but transcription is still low. (D)</p> Signup and view all the answers

Which of the following is true about the lac operon in the absence of lactose?

<p>Very little lac mRNA is produced due to the LacI repressor. (D)</p> Signup and view all the answers

What occurs to the lac operon when glucose is present and lactose is absent?

<p>The operon is completely inactive. (A)</p> Signup and view all the answers

Which of the following factors increases the recruitment of RNA polymerase to the lacP promoter?

<p>The CAP-cAMP complex. (C)</p> Signup and view all the answers

What phenotype is exhibited by lacZ-, lacY-, lacP-, and lacIs mutations?

<p>Uninducible expression of the lac operon. (D)</p> Signup and view all the answers

Which protein is associated with the activation of transcription for the lac operon in the presence of lactose?

<p>CAP. (D)</p> Signup and view all the answers

What is the primary effect of the acetylation of histone tails on gene expression?

<p>It enhances the accessibility of DNA to transcription factors. (A)</p> Signup and view all the answers

Which process allows for heritable changes in gene expression without altering the DNA sequence?

<p>Epigenetic inheritance. (D)</p> Signup and view all the answers

What happens to the X chromosome inactivation during early embryonic development in females?

<p>The inactivated X chromosome forms heterochromatin. (C)</p> Signup and view all the answers

What role does DNA methylation play in gene expression?

<p>It decreases gene expression by preventing transcription factor binding. (B)</p> Signup and view all the answers

What best describes an organism with female X chromosome inactivation?

<p>It creates functional mosaics of gene expression across different cells. (C)</p> Signup and view all the answers

Which is a characteristic of epigenetic modifications?

<p>They can be influenced by environmental factors. (C)</p> Signup and view all the answers

What is a common method of stable modification of DNA that leads to gene regulation?

<p>DNA methylation. (C)</p> Signup and view all the answers

Which of the following statements about epigenetic inheritance is true?

<p>It can be passed on through both mitosis and meiosis. (C)</p> Signup and view all the answers

How is the migration of DNA molecules in an electric field related to their size?

<p>Inversely proportional to the log of the size of the molecule (D)</p> Signup and view all the answers

What role do fluorescent dyes, like ethidium bromide, play in DNA analysis?

<p>They bind to dsDNA for visualization (A)</p> Signup and view all the answers

In agarose gel electrophoresis, how do small DNA molecules behave compared to larger ones?

<p>They migrate faster and are found closer to the bottom (D)</p> Signup and view all the answers

What factors primarily influence the migration speed of DNA in an electric field?

<p>Size and shape of the DNA molecule (B)</p> Signup and view all the answers

Why is agarose gel electrophoresis a widely used technique for DNA analysis?

<p>It allows for visualization and separation of DNA fragments efficiently (B)</p> Signup and view all the answers

Which statement about the mobility of DNA fragments during electrophoresis is correct?

<p>Smaller fragments move faster than larger fragments (D)</p> Signup and view all the answers

Which factors can affect the separation of DNA molecules in agarose gel electrophoresis?

<p>DNA concentration and gel composition (B)</p> Signup and view all the answers

What is the primary advantage of using fluorescent DNA intercalators in DNA analysis?

<p>They enhance the clarity of the DNA bands (C)</p> Signup and view all the answers

Flashcards

lacZ- mutation

A mutation in the lacZ gene, preventing the production of the enzyme beta-galactosidase.

lacY- mutation

A mutation in the lacY gene, preventing the production of lactose permease, a protein responsible for transporting lactose into the cell.

lacP- mutation

A mutation in the lacP promoter, disrupting the binding site for RNA polymerase, resulting in reduced transcription of the lac operon.

lacIs mutation

A mutation in the lacI gene, resulting in a non-functional LacI repressor protein, which cannot bind to the lacO operator, leading to constitutive expression of the lac operon.

Signup and view all the flashcards

Lac operon regulation: No lactose

In the absence of lactose, the LacI repressor binds to the lacO operator, preventing RNA polymerase from transcribing the lac operon.

Signup and view all the flashcards

Lac operon regulation: Glucose and lactose

When both glucose and lactose are present, LacI does not bind to lacO, but the affinity of RNA polymerase for the lacP promoter is low. Only a few transcripts are produced.

Signup and view all the flashcards

Lac operon regulation: Lactose and no glucose

In the absence of glucose and presence of lactose, the LacI repressor does not bind to the lacO operator. The cAMP-CAP complex binds to the lacP promoter, enhancing RNA polymerase binding and transcription.

Signup and view all the flashcards

Lac operon: Inducible expression

The lac operon is efficiently transcribed when lactose is available and glucose is absent. This ensures that the cell only utilizes lactose as a carbon source when glucose is scarce.

Signup and view all the flashcards

5-methylcytosine (5mC)

A modification of a cytosine base where a methyl group (CH3) is added to the 5' position of the cytosine ring. This alters the structure of the cytosine base.

Signup and view all the flashcards

Methyl-binding Proteins

Proteins that recognize and bind to methylated DNA, particularly 5-methylcytosine.

Signup and view all the flashcards

Base Pairing of 5mC

The modification of cytosine to 5-methylcytosine doesn't change how it pairs with guanine in DNA.

Signup and view all the flashcards

Histone Deacetylases (HDACs)

Enzymes involved in removing acetyl groups from histone proteins.

Signup and view all the flashcards

Gene Repression

The process of silencing or repressing gene expression.

Signup and view all the flashcards

Recombinant DNA technology

Set of techniques to manipulate DNA sequences, including locating, isolating, altering, amplifying and studying.

Signup and view all the flashcards

Agarose Gel Electrophoresis

A method used to separate DNA fragments based on their size. Smaller DNA fragments move faster through the gel than larger fragments.

Signup and view all the flashcards

Genetic engineering

The application of Recombinant DNA technology to solve practical problems in medicine, agriculture, biotechnology.

Signup and view all the flashcards

Fluorescent DNA Intercalator

A molecule that binds to DNA and makes it visible under UV light. This allows researchers to see the DNA fragments after they are separated by electrophoresis.

Signup and view all the flashcards

Size Standard

A molecule that is used as a reference point to determine the size of other DNA fragments.

Signup and view all the flashcards

Synthetic biology

Field focused on designing and creating new biological systems with functions not found in nature.

Signup and view all the flashcards

Restriction enzymes

A set of biochemical tools that cut DNA at specific sequences.

Signup and view all the flashcards

Insert

A small piece of DNA that is inserted into a vector to create a recombinant DNA molecule.

Signup and view all the flashcards

Cloning vector

A DNA molecule that carries and replicates the gene of interest in a host organism.

Signup and view all the flashcards

Vector

A vehicle used to transport and replicate DNA inserts. Vectors are often plasmids or viruses.

Signup and view all the flashcards

DNA cloning

Process of making identical copies of a specific DNA fragment using vectors and host cells.

Signup and view all the flashcards

DNA Cloning

The process of creating a recombinant DNA molecule by joining a DNA insert into a vector.

Signup and view all the flashcards

DNA gel electrophoresis

A technique that separates DNA fragments based on their length and electric charge.

Signup and view all the flashcards

Recombinant DNA

A molecule of DNA that contains both the vector and the insert. It's a combination of two different DNA molecules.

Signup and view all the flashcards

Polymerase chain reaction (PCR)

A technique that uses a thermal cycling process to amplify a specific DNA sequence.

Signup and view all the flashcards

DNA Transformation

The process of transferring DNA into cells. This allows the cells to produce the protein encoded by the DNA.

Signup and view all the flashcards

Histone Acetylation

A process where acetyl groups are added to histone tails, making DNA more accessible to transcription factors, leading to increased gene expression.

Signup and view all the flashcards

DNA Methylation

A modification to DNA where a methyl group is added, making DNA less accessible to transcription factors, leading to decreased gene expression.

Signup and view all the flashcards

Epigenetics

Heritable changes in gene expression that do not involve alterations to the DNA sequence. These modifications can be passed on through cell division and, in some cases, across generations.

Signup and view all the flashcards

Transcription Factors

Proteins associated with DNA that help regulate gene expression.

Signup and view all the flashcards

Heterochromatin

A stable, inactive form of chromatin, characterized by tightly packed DNA, making it difficult for transcription factors to access genes.

Signup and view all the flashcards

Euchromatin

A highly active form of chromatin, characterized by loosely packed DNA, making it easy for transcription factors to access genes.

Signup and view all the flashcards

X Chromosome Inactivation

During early development, in females, one of the two X chromosomes is randomly inactivated and condensed into a Barr body, making it inactive.

Signup and view all the flashcards

Mosaic Pattern (in females)

A mosaic pattern in females where different cells express genes from either one or the other X chromosome due to X chromosome inactivation.

Signup and view all the flashcards

Plasmid Vector

A short segment of DNA that can replicate independently within a host cell. It is used to carry and amplify a specific gene or DNA fragment in genetic engineering.

Signup and view all the flashcards

Origin of Replication (ori)

A specific DNA sequence within a plasmid that initiates DNA replication, allowing the plasmid to multiply within a host cell.

Signup and view all the flashcards

Selection Marker

A gene within a plasmid that provides resistance to a specific antibiotic, allowing selection for bacteria containing the plasmid.

Signup and view all the flashcards

Multiple Cloning Site (MCS)

A region within a plasmid containing multiple restriction enzyme recognition sites, allowing the insertion of foreign DNA at specific locations.

Signup and view all the flashcards

Promoter

A DNA sequence that controls the expression of a gene. It is found upstream of the target gene in a plasmid.

Signup and view all the flashcards

Recombination

A process that inserts a fragment of DNA into a plasmid vector, creating a recombinant molecule.

Signup and view all the flashcards

Study Notes

DNA Cloning

  • DNA cloning is a set of molecular tools used to locate, isolate, alter, amplify, or study DNA segments.
  • Genetic engineering is the application of recombinant DNA technology to solve problems in biology, medicine, veterinary medicine, agriculture, and other areas.
  • Synthetic biology designs complex, biologically based systems that exhibit functions not found in nature.
  • Hot springs in Yellowstone National Park are the source of Taq DNA polymerase.

Overview of Molecular Genetics (Lecture 21)

  • Molecular genetics lectures cover mutations, DNA repair, the dynamic genome, transcription, DNA replication, regulation (in bacteria and eukaryotes), DNA cloning techniques, the genetic code, protein synthesis, genomics, and the human genome.
  • Mutations can be studied in relation to DNA repair.
  • Transcription, regulation, and translation relate to the central dogma of gene expression.
  • DNA cloning is a specific area of molecular genetics.

The Lac Operon of E. coli

  • The lac operon contains genes for enzymes that metabolize lactose.
  • When lactose is absent, the lac repressor binds to the operator, preventing transcription.
  • With lactose present and glucose absent, the rate of synthesis of the three enzymes increases about 1,000-fold within 2-3 minutes. This is called induction.
  • ß-galactosidase hydrolyzes lactose.
  • Lactose permease transports lactose into the cell.
  • Transacetylase modifies lactose.

Constitutive and Uninducible Lac Operon Mutations

  • Constitutive mutants express the lac operon even without lactose.
  • Uninducible mutants fail to express the lac operon even with lactose present.
  • Mutations in various genes (lacZ, lacy, lacl, laco, lacP) can result in constitutive or uninducible phenotypes.

Transcriptional Regulation of the Lac Operon

  • The lac operon is regulated by the presence or absence of lactose and glucose.
  • In the absence of lactose, the lac repressor binds the operator to prevent transcription.
  • In the presence of lactose, allolactose acts as an inducer for the lac operon.
  • In the presence of glucose and lactose, cAMP + CAP bind.

Cis-acting Regulatory Sequences in Eukaryotic Genes

  • There are three major classes of cis-regulatory sequences in eukaryotic protein-coding genes: promoters, promoter-proximal elements, enhancers, and silencers.
  • Enhancers and silencers are located upstream or downstream of the promoter.
  • Enhancers increase transcription, silencers reduce transcription.

The Problem with Chromatin

  • Eukaryotic DNA is packaged tightly into chromatin.
  • Euchromatin is open chromatin, genes in euchromatin are transcribed.
  • Heterochromatin is condensed chromatin, genes in heterochromatin are silenced.
  • Chromatin remodeling can expose genes for transcription.

Chromatin Remodeling Protein

  • Even in open chromatin, a promoter might be inaccessible to RNA polymerase II if the TATA box happens to be tightly bound to a nucleosome.
  • Chromatin remodeling complexes displace nucleosomes.

Histone Tail Acetylation and Methylation

  • Acetylation occurs on lysine residues. Acetylated histones lead to open chromatin.
  • Deacetylation leads to inactive chromatin..
  • Methylation occurs on cytosine.
  • Methylated DNA is often associated with repressed gene expression.

Epigenetic Inheritance

  • Heritable modification in gene function or expression that does not alter the base sequence of DNA.
  • Epigenetic states can be inherited through mitosis and meiosis.
  • X chromosome inactivation is an example of epigenetic inheritance.

Parental Imprinting

  • Some autosomal genes are systematically silenced during gametogenesis, so only the paternal copy is expressed in the progeny.

Recombinant DNA Technology

  • Recombinant DNA technology is a suite of molecular tools used for locating, isolating, altering, amplifying, or studying DNA segments.

Cloning Vectors

  • Cloning vectors are stable, self-replicating DNA molecules.
  • They typically contain an origin of replication, selectable markers, and unique cloning sites.
  • Plasmids and bacteriophage vectors are common cloning vectors.
  • Plasmids are small, circular extrachromosomal DNA molecules.
  • Cosmids are used to insert large DNA fragments.
  • BACs are similar to plasmids in several ways.
  • YACs can encompass even larger inserts.

Restriction Enzymes

  • Restriction enzymes recognize specific DNA sequences and cut the DNA at those sites in a process called restriction digestion.
  • Restriction enzymes can generate blunt ends or sticky ends.
  • Compatible sticky ends allow fragments to be joined together.

PCR

  • PCR is a method for rapidly amplifying small DNA fragments.
  • It uses a heat-stable DNA polymerase (e.g., Taq polymerase).
  • It involves repeated cycles of heating and cooling to denature and anneal DNA strands and extend the primers.

Gel Electrophoresis

  • Gel electrophoresis separates DNA molecules based on their size and charge.
  • DNA fragments are separated in an agarose or polyacrylamide gel.
  • Fluorescent dyes are used to visualize DNA fragments.

Studying That Suits You

Use AI to generate personalized quizzes and flashcards to suit your learning preferences.

Quiz Team

Related Documents

More Like This

Use Quizgecko on...
Browser
Browser