Recombinant DNA-Based Molecular Techniques: DNA Cloning (Part I)
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Questions and Answers

What is the main purpose of DNA cloning?

  • Creating palindromic sequences
  • Producing restriction endonucleases
  • Generating recombinant DNA (correct)
  • Amplifying RNA segments

What is the role of a vector in DNA cloning?

  • Breaks the phosphodiester bond
  • Encodes a protein or non-coding RNA
  • Generates sticky ends
  • Serves as a carrier for the gene of interest (correct)

How do restriction endonucleases function in DNA cloning?

  • Create recombinant DNA
  • Generate blunt-ended fragments
  • Recognize and cut DNA at specific sequences (correct)
  • Form sticky or cohesive ends

What defines palindromic sequences in the context of DNA cloning?

<p>Sequences that read the same forwards and backwards (A)</p> Signup and view all the answers

How are blunt-ended fragments generated by restriction endonucleases?

<p>By cutting at the same position on both strands (D)</p> Signup and view all the answers

What distinguishes staggered (off-center) cuts by restriction endonucleases?

<p>They cut the two DNA strands at different positions (C)</p> Signup and view all the answers

What is the purpose of a DNA ligase in the process of making recombinant DNA?

<p>To 'close' the plasmid (A)</p> Signup and view all the answers

What characteristic of an expression vector distinguishes it from a regular vector?

<p>It contains promoter and termination sequences (A)</p> Signup and view all the answers

Why is it challenging to express proteins in bacteria?

<p>They have internal disulfide bonds (A)</p> Signup and view all the answers

What solution is proposed to overcome the challenges of protein expression in bacteria?

<p>Employing eukaryotic systems like yeast (B)</p> Signup and view all the answers

How can proteins be 'tagged' during the process of creation of protein hybrids?

<p>Inserting a sequence of amino acids called tags (A)</p> Signup and view all the answers

Which enzyme is crucial for sealing the DNA fragments after they hybridize in the process of making recombinant DNA?

<p>DNA ligase (D)</p> Signup and view all the answers

Which protein tag is detected using an antibody specific to a peptide sequence?

<p>FLAG (B)</p> Signup and view all the answers

What is a protein domain based on the provided text?

<p>A region of the protein's polypeptide chain with a defined three-dimensional structure (D)</p> Signup and view all the answers

Why is Green Fluorescent Protein (GFP) used according to the text?

<p>For protein detection purposes (C)</p> Signup and view all the answers

For which protein tag is purification achieved by binding to nickel or imidazole?

<p>Poly-His (B)</p> Signup and view all the answers

Which method involves separating proteins based on size in gel wells?

<p>Gel electrophoresis (D)</p> Signup and view all the answers

Which protein tag is used for protein purification purposes?

<p>GST-tag (D)</p> Signup and view all the answers

Which protein tag is associated with a ~220 amino acid protein and can be detected by fluorescence?

<p>GFP (B)</p> Signup and view all the answers

What makes a protein domain distinct according to the text?

<p>It has a defined three-dimensional structure and folds independently (C)</p> Signup and view all the answers

What is the purpose of the GST-tag in the context provided?

<p>For purification of GST-tagged proteins (B)</p> Signup and view all the answers

Which amino acid sequence is specific to the V5 protein tag?

<p>GKPIPNPLLGLDST (C)</p> Signup and view all the answers

What is the purpose of adding six histidines to a protein?

<p>Purification using nickel or imidazole (A)</p> Signup and view all the answers

What is the role of DNA ligase in the context of cloning?

<p>Joins DNA ends by forming phosphodiester bonds (C)</p> Signup and view all the answers

What is the purpose of cloning in genetics?

<p>To make several copies of one thing (D)</p> Signup and view all the answers

What is recombinant DNA technology?

<p>Manipulating DNA for various purposes (B)</p> Signup and view all the answers

Why are bacterial plasmids considered excellent vectors for cloning?

<p>They replicate independently of the main bacterial genome (B)</p> Signup and view all the answers

Which feature must plasmid cloning vectors have?

<p>Presence of an antibiotic resistance gene (B)</p> Signup and view all the answers

What is the main purpose of using restriction endonucleases in DNA cloning?

<p>Generate sticky or blunt ends on DNA fragments (D)</p> Signup and view all the answers

Which of the following accurately describes a palindromic sequence in the context of DNA cloning?

<p>A sequence that reads the same from left to right as it does from right to left (C)</p> Signup and view all the answers

In DNA cloning, what is the significance of generating sticky or cohesive ends on DNA fragments?

<p>Allows for easier insertion into recipient cells (C)</p> Signup and view all the answers

What characterizes a blunt-ended fragment generated by restriction endonucleases?

<p>Aligns perfectly with complementary sequences in recipient cells (A)</p> Signup and view all the answers

What role do vectors play in the process of DNA cloning?

<p>Carry and replicate inserted genes in host cells (A)</p> Signup and view all the answers

Why are restriction endonucleases crucial in creating recombinant DNA?

<p>To generate DNA fragments with specific ends for insertion (B)</p> Signup and view all the answers

Which enzymatic activity is characteristic of restriction endonucleases?

<p>Recognize and cut specific sequences in DNA (C)</p> Signup and view all the answers

What is the purpose of adding six histidines to a protein?

<p>Enabling purification using nickel-bound beads (C)</p> Signup and view all the answers

Which protein tag is associated with the amino acid sequence DYKDDDDK?

<p>FLAG tag (A)</p> Signup and view all the answers

What method is used to separate proteins according to size in gel electrophoresis?

<p>Gel electrophoresis (SDS-PAGE) (A)</p> Signup and view all the answers

Which protein tag allows for purification by binding to glutathione?

<p>GST tag (D)</p> Signup and view all the answers

Which amino acid sequence is specific to the V5 protein tag?

<p>GKPIPNPLLGLDST (B)</p> Signup and view all the answers

What is the detection method for Green Fluorescent Protein (GFP)?

<p>Fluorescence detection (D)</p> Signup and view all the answers

What is the purpose of the ShineDalgarno (SD) sequences in expression vectors?

<p>Promote transcription initiation (A)</p> Signup and view all the answers

In DNA cloning, what is the function of a poly-T primer?

<p>Selecting for human mRNA (B)</p> Signup and view all the answers

Why are eukaryotic systems like yeast preferred over bacteria for protein expression?

<p>To enable post-translational modifications (A)</p> Signup and view all the answers

What is the primary role of a gene clone in the creation of protein hybrids?

<p>Creating tagged proteins (C)</p> Signup and view all the answers

Which characteristic of restriction endonucleases distinguishes the 'many types of RNA' challenge?

<p>Palindromic sequences (A)</p> Signup and view all the answers

What is the impact of the lack of glycosylation on protein expression in bacteria?

<p>Prevents post-translational modifications (D)</p> Signup and view all the answers

How does the addition of tags affect protein purification efficiency?

<p>Improves target protein yield (A)</p> Signup and view all the answers

What is the function of DNA ligase in DNA cloning?

<p>Joining DNA ends by forming phosphodiester bonds (C)</p> Signup and view all the answers

Why are plasmids considered suitable vectors for cloning?

<p>They possess antibiotic resistance genes (B)</p> Signup and view all the answers

What is the purpose of an origin of replication in plasmid cloning vectors?

<p>To ensure independent replication of the plasmid (B)</p> Signup and view all the answers

How can a DNA fragment be inserted into a plasmid vector?

<p>By ligating the fragment into the vector (D)</p> Signup and view all the answers

What is the purpose of a selectable gene in a plasmid cloning vector?

<p>To identify cells containing the vector (A)</p> Signup and view all the answers

In cloning, what is the role of recombinant DNA technology?

<p>Inserting DNA fragments into vectors (A)</p> Signup and view all the answers

What is a protein domain characterized by?

<p>Self-stabilization and independent folding (A)</p> Signup and view all the answers

Which of the following is NOT a characteristic of a protein domain?

<p>Dependence on the rest of the protein (A)</p> Signup and view all the answers

What is the role of Green Fluorescent Protein (GFP) in proteins?

<p>To allow protein detection (C)</p> Signup and view all the answers

How do GFP-tagged proteins differ from GST-tagged proteins?

<p>GFP allows for purification purposes (C)</p> Signup and view all the answers

Which technique involves separating proteins based on size in gel wells?

<p>Gel electrophoresis (A)</p> Signup and view all the answers

Why is it essential for a protein domain to fold independently from the rest of the protein?

<p>To maintain its compact structure (D)</p> Signup and view all the answers

What distinguishes Green Fluorescent Protein (GFP) from Glutathione S transferase (GST) in their usage?

<p>Purification vs. gene detection (D)</p> Signup and view all the answers

What type of structure does a protein domain have?

<p>$\alpha$-helix, $\beta$-sheet, or both (D)</p> Signup and view all the answers

What is the purpose of a luciferase reporter assay in molecular biology?

<p>To study the activity of a gene under certain conditions (A)</p> Signup and view all the answers

In the Co-immunoprecipitation technique, what is targeted by the antibody molecules conjugated to special beads?

<p>The protein of interest (A)</p> Signup and view all the answers

What is the primary role of a DNA library in molecular biology?

<p>To store DNA fragments for analysis (A)</p> Signup and view all the answers

Which technique involves transfected cells and measures the expression level of luciferase instead of the original gene?

<p>Luciferase reporter assay (A)</p> Signup and view all the answers

What is the main target in Co-immunoprecipitation experiments using antibody-conjugated beads?

<p>Protein of interest (D)</p> Signup and view all the answers

Why would a scientist use a luciferase reporter assay instead of directly measuring the original gene's expression level?

<p>To avoid altering the original gene (A)</p> Signup and view all the answers

What is the purpose of the LacZ gene in the yeast two-hybrid system?

<p>To generate a blue product in the presence of X-gal (A)</p> Signup and view all the answers

Why are both DNA-binding domain (BD) and activation domain (AD) required to be close to each other in the yeast two-hybrid system?

<p>To activate transcription (C)</p> Signup and view all the answers

How is the production of recombinant proteins achieved in the cloning of hybrid proteins?

<p>By transferring recombinant plasmids into yeast cells (A)</p> Signup and view all the answers

What is the purpose of transferring recombinant plasmids into yeast cells in the cloning of hybrid proteins?

<p>To identify unknown interacting proteins (C)</p> Signup and view all the answers

Why are yeast cells grown in the presence of X-gal during the yeast two-hybrid system?

<p>To identify interacting proteins based on color change (D)</p> Signup and view all the answers

What distinguishes the function of DNA-binding domain (BD) and activation domain (AD) in the yeast two-hybrid system?

<p>BD controls DNA binding, while AD enhances transcription activation. (B)</p> Signup and view all the answers

What is the main purpose of a luciferase reporter assay in molecular biology?

<p>Study the activity of a gene by measuring luciferase expression (C)</p> Signup and view all the answers

In a luciferase reporter assay, what is placed upstream of the reporter gene in the plasmid?

<p>Regulatory region of the gene (D)</p> Signup and view all the answers

What is the specific function of Co-immunoprecipitation in molecular techniques?

<p>Targeting proteins bound to beads (B)</p> Signup and view all the answers

In Co-immunoprecipitation, what are antibody molecules conjugated to for targeting proteins?

<p>Special beads (C)</p> Signup and view all the answers

What distinguishes Firefly luciferase in a luciferase reporter assay?

<p>Role as a reporter gene (A)</p> Signup and view all the answers

What is the primary purpose of a DNA library?

<p>Create bacterial clones with specific DNA pieces (B)</p> Signup and view all the answers

What is the role of the promoter in a luciferase reporter assay using recombinant DNA techniques?

<p>'Switch on' luciferase expression (D)</p> Signup and view all the answers

How does Co-immunoprecipitation work in identifying proteins of interest?

<p>'Switch on' only the protein of interest and its bound proteins (D)</p> Signup and view all the answers

What is the role of the activation domain (AD) in the yeast two-hybrid system?

<p>Responsible for the activation of transcription (B)</p> Signup and view all the answers

Why are both DNA-binding domain (BD) and activation domain (AD) required to be close to each other in the yeast two-hybrid system?

<p>To facilitate interactions between known and unknown proteins (C)</p> Signup and view all the answers

What distinguishes the UAS in yeast cells?

<p>Is controlled by a transcription factor (A)</p> Signup and view all the answers

What is the significance of growing yeast cells in the presence of X-gal during the yeast two-hybrid system?

<p>Produces a blue product upon cleavage (B)</p> Signup and view all the answers

In the context of cloning hybrid proteins, what is cloned separately along with the unknown gene Y?

<p>The activation domain (AD) (A)</p> Signup and view all the answers

What is the primary purpose of using the LacZ gene in the yeast two-hybrid system?

<p>To generate a blue product for identifying interactions (D)</p> Signup and view all the answers

What is the main function of Cas9 in the CRISPR/Cas9 system?

<p>Creating single or double strand breaks in DNA (B)</p> Signup and view all the answers

How is the Cas9 nuclease directed to its target sequence in the CRISPR/Cas9 system?

<p>By a short RNA fragment known as a guide RNA (gRNA) (A)</p> Signup and view all the answers

What happens when a phage infects a bacterial cell in relation to the CRISPR/Cas9 system?

<p>The bacterial cell degrades the phage DNA and integrates fragments into the CRISPR cluster (A)</p> Signup and view all the answers

How can a gene be studied using CRISPR/Cas9 gene editing technology?

<p>By directly altering the gene's function using Cas9 (A)</p> Signup and view all the answers

What is the specific role of the guide RNA (gRNA) in the CRISPR/Cas9 system?

<p>Directing Cas9 to its target sequence in DNA (C)</p> Signup and view all the answers

What is the outcome of introducing both the gRNA and Cas9 gene into human cells?

<p>Study of gene function by mutating it (D)</p> Signup and view all the answers

How does CRISPR/Cas9 system protect bacterial cells from phages?

<p>By degrading the phage DNA and integrating a fragment into the CRISPR cluster (A)</p> Signup and view all the answers

What guides the Cas9 nuclease to its target sequence in the CRISPR/Cas9 system?

<p>Guide RNA (gRNA) (D)</p> Signup and view all the answers

What allows for the function of a gene to be studied through gene editing mechanisms?

<p>Mutating the gene to observe effects (A)</p> Signup and view all the answers

How are both gRNA and Cas9 gene introduced into human cells in gene editing?

<p>As separate genes cloned into plasmid vectors (B)</p> Signup and view all the answers

What specifically occurs when a phage infects a bacterial cell after integration into the CRISPR/Cas9 system?

<p>The phage DNA is transcribed into guide RNA (gRNA) (B)</p> Signup and view all the answers

What is the role of Cas9 nuclease in gene editing using CRISPR technology?

<p>Guiding to its target DNA sequence for cutting (C)</p> Signup and view all the answers

How does gene editing with CRISPR technology enable replacing a mutated gene with a normal one?

<p>Through DNA repair mechanisms using introduced DNA (B)</p> Signup and view all the answers

'What role does gRNA play in guiding Cas9 nuclease to its target?' - What would be a correct answer?

<p>'Directing Cas9 to cut specific DNA sequences' (D)</p> Signup and view all the answers

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