GPCR Oligomerization Overview

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Questions and Answers

What is the primary purpose of Co-Immunoprecipitation (Co-IP)?

  • To capture proteins bound to a specific target protein. (correct)
  • To perform Western blotting on isolated proteins.
  • To analyze the molecular weight of proteins.
  • To determine the structure of proteins.

Fluorescence Resonance Energy Transfer (FRET) relies on which of the following phenomena?

  • Distance-dependent energy transfer between fluorescent donor and acceptor molecules. (correct)
  • Energy absorption by fluorescent receptors.
  • Chemical reactions between fluorescent molecules.
  • Direct binding of fluorescent proteins to one another.

What significant structure was revealed through MALDI mass spectrometry of GPCR and G protein complexes?

  • A trimer consisting of three identical GPCRs.
  • A dimer formed from two G proteins.
  • A monomer of a GPCR.
  • A pentameric unit of two GPCR monomers and one heterotrimeric G protein. (correct)

Which technique would most likely be used to analyze receptor complexes after crosslinking proteins?

<p>Western blot analysis to detect higher molecular weight forms. (B)</p> Signup and view all the answers

What does the analysis of protein complexes through co-immunoprecipitation help identify?

<p>New binding partners and their binding affinities. (C)</p> Signup and view all the answers

What characteristic of bivalent ligands allows them to potentially increase receptor heterodimerization?

<p>They can bind to two different receptors simultaneously. (A)</p> Signup and view all the answers

What is the main advantage of using dimeric ligands over monovalent ligands?

<p>Dimeric ligands can induce dimerization of receptors. (A)</p> Signup and view all the answers

What is a specific characteristic of the heterodimer-specific ligand?

<p>It binds to a conformation present only in heterodimers. (D)</p> Signup and view all the answers

Which statement best describes the potential of bivalent ligands in drug development?

<p>They may provide increased affinity and selectivity. (A)</p> Signup and view all the answers

How do dimeric ligands operate to enhance receptor interactions?

<p>By crosslinking two receptors through an appropriate linker. (A)</p> Signup and view all the answers

What is the minimal oligomeric arrangement of GPCRs?

<p>Dimer (B)</p> Signup and view all the answers

How does heterodimerization impact GPCRs?

<p>It enhances their ability to respond to ligands (C)</p> Signup and view all the answers

What is one role of GPCR dimerization during receptor maturation?

<p>It facilitates transport from the ER to the cell surface (A)</p> Signup and view all the answers

What are receptor heterodimers expected to exhibit compared to their individual protomers?

<p>Distinct signaling and trafficking properties (B)</p> Signup and view all the answers

What effect can ligand binding have on GPCR dimers?

<p>It can either promote or inhibit dimer formation (C)</p> Signup and view all the answers

What is an assumption about GPCRs that has been altered by recent evidence?

<p>They are capable of forming oligomeric complexes (B)</p> Signup and view all the answers

What does it mean for GPCR heterodimers to bind heterodimer-specific ligands?

<p>Ligands can only bind when in a heterodimeric complex (A)</p> Signup and view all the answers

What is the primary function of GPCR oligomerization in terms of cell biology?

<p>To reshape our understanding of receptor functions (D)</p> Signup and view all the answers

Which example illustrates ligand-promoted receptor hetero-oligomerization?

<p>Dopamine receptor (D2R) and somatostatin receptor (SSTR5) hetero-oligomers (C)</p> Signup and view all the answers

What characterizes constitutive dimerization processes in GPCRs?

<p>They may occur independently of ligand interactions. (B)</p> Signup and view all the answers

How does GPCR heterodimerization affect signaling pathways?

<p>It leads to potentiation and attenuation of signaling. (B)</p> Signup and view all the answers

Which statement about G-protein interactions with GPCR dimers is generally true?

<p>A single G-protein interacts with each GPCR dimer. (D)</p> Signup and view all the answers

What impact does heterodimerization have on receptors?

<p>It modifies biochemical, pharmacological, and functional properties. (A)</p> Signup and view all the answers

What is a consequence of the co-internalization of GPCR heterodimers?

<p>It allows the internalization of one receptor upon stimulation of the other. (B)</p> Signup and view all the answers

What is an example of positive ligand binding cooperativity in GPCRs?

<p>δ- and κ-opioid receptor heterodimer (B)</p> Signup and view all the answers

Which of the following techniques is used for assessing GPCR internalization?

<p>β-arrestin recruitment assay (C)</p> Signup and view all the answers

Which model describes the interaction of GPCRs in heterodimerization?

<p>The contact dimer or lateral packing model (D)</p> Signup and view all the answers

Which cell lines are commonly used in recombinant systems to study GPCRs?

<p>CHO and HEK293 (D)</p> Signup and view all the answers

What can inhibit the internalization of a GPCR heterodimer?

<p>Presence of a protomer resistant to endocytosis (A)</p> Signup and view all the answers

What type of ligands can be used to selectively target GPCRs?

<p>Synthetic agonists and biased agonists (A)</p> Signup and view all the answers

To study drug-receptor interactions and signal transduction, what method is commonly used?

<p>Recombinant cell lines overexpressing a single GPCR type (B)</p> Signup and view all the answers

What is assessed through the measurement of intracellular calcium in GPCR studies?

<p>Downstream effectors and second messengers (D)</p> Signup and view all the answers

Which approach involves tagging GPCRs and β-arrestin for studies?

<p>BRET assay (C)</p> Signup and view all the answers

What role do biased agonists serve in GPCR signaling?

<p>They promote arrestin-dependent signaling pathways. (A)</p> Signup and view all the answers

What is the approximate maximum range for Resonance Energy Transfer to occur?

<p>10 nanometers (C)</p> Signup and view all the answers

Which factor is crucial for efficient energy transfer in FRET?

<p>Spectral overlap between donor emission and acceptor absorption (A)</p> Signup and view all the answers

Which of the following statements describes a scenario that results in FRET?

<p>Conformational change upon binding leads to energy transfer (A)</p> Signup and view all the answers

Which characteristic defines Bioluminescence Resonance Energy Transfer (BRET)?

<p>It uses a bioluminescent donor and a fluorescent acceptor. (D)</p> Signup and view all the answers

What is the emission wavelength of light produced by Rluc in BRET?

<p>395 nm (D)</p> Signup and view all the answers

What happens to the mutant GFP2 when it is close to the emitted blue light in a BRET system?

<p>It emits light at 510 nm after being excited. (D)</p> Signup and view all the answers

Which process effectively causes 'No FRET' to occur?

<p>Proteolytic cleavage (B)</p> Signup and view all the answers

What compound is catalyzed by Rluc in the presence of oxygen during BRET?

<p>DeepBlueC (C)</p> Signup and view all the answers

Flashcards

Heterodimerization

When two different receptor proteins join together to form a functional unit.

Bivalent Ligands

Drugs designed to bind to two different receptors simultaneously, often promoting heterodimerization.

Dimeric Ligands

Drugs formed by linking two single molecule drugs (monovalent ligands) to target receptors.

Heterodimer Selective Drugs

Drugs that specifically target only the heterodimer form of two receptors, avoiding interaction with the individual receptors.

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Heterodimer Specific Ligand

A drug designed to fit a unique binding site that only exists when two receptors are heterodimerized.

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GPCR Oligomerization

The process where G-protein coupled receptors (GPCRs) form complexes with other GPCRs, typically as dimers (two units).

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Homodimer

An oligomeric complex formed by two identical GPCR subunits.

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Heterodimer

An oligomeric complex formed by two different GPCR subunits.

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Distinct Signaling

Heterodimers can exhibit unique signaling properties compared to their individual subunits.

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Ligand Binding

Heterodimers can bind to ligands that only bind to the complex, not the individual subunits.

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Receptor Maturation

Dimerization can be essential for the proper folding and trafficking of GPCRs from the ER to the cell surface.

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Dynamic Regulation

Ligand binding can influence GPCR dimerization, either promoting or inhibiting its formation.

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Trafficking Properties

Oligomerization can impact how GPCRs move within the cell, affecting their distribution and function.

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Ligand-promoted dimerization

The formation of a dimer (two receptors bound together) that is triggered by the presence of a ligand (a molecule that binds to a receptor).

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Constitutive dimerization

The formation of a dimer (two receptors bound together) that occurs independently of ligand binding.

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Positive Cooperativity

When the binding of one ligand to a receptor in a heterodimer increases the affinity (attraction) of the other receptor for its ligand.

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Negative Cooperativity

When the binding of one ligand to a receptor in a heterodimer decreases the affinity (attraction) of the other receptor for its ligand.

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G-protein selectivity

The specific type of G protein that a receptor can interact with. Heterodimerization can alter this.

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Co-internalization

The process of two receptors being taken into the cell together after only one receptor is activated by a ligand. This is often seen with heterodimers.

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Lateral Packing Model

A model of GPCR dimerization in which receptors interact via their transmembrane domains, but their overall monomeric structures remain intact.

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Domain-swapped Model

A model of GPCR dimerization in which segments of the transmembrane domains are swapped between two receptors, leading to a more intertwined structure.

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Crosslinking of Proteins

A technique that uses agents to link proteins together, forming larger complexes. These complexes can be detected using Western blotting, revealing the presence of receptor interactions.

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Co-Immunoprecipitation (Co-IP)

A method used to identify protein-protein interactions. Antibodies specific to a target protein are used to capture interacting proteins, forming a complex that can be analyzed to identify binding partners and their characteristics.

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FRET (Fluorescence Resonance Energy Transfer)

A biophysical technique that uses fluorescent molecules (donor and acceptor) to measure the distance between them. When the donor is excited, it can transfer energy to the acceptor if they are close enough, resulting in fluorescence emission by the acceptor.

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BRET (Bioluminescence Resonance Energy Transfer)

Similar to FRET, but uses a bioluminescent donor molecule instead of a fluorescent one. It is used to study protein interactions in living cells, providing information on their proximity and interaction dynamics.

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MALDI Mass Spectrometry

A technique that uses mass spectrometry to analyze the molecular weights of proteins. It can be used to determine the composition and stoichiometry (the relative amounts of each component) of protein complexes, like GPCRs and G proteins.

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FRET

Förster Resonance Energy Transfer is a process where energy is transferred non-radiatively from an excited donor fluorophore to an acceptor fluorophore, resulting in the acceptor fluorophore's emission.

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FRET Range

The distance over which FRET can occur is limited to approximately 4-10 nanometers.

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Spectral Overlap

Efficient FRET requires significant spectral overlap between the donor's emission spectrum and the acceptor's absorption spectrum.

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FRET Application: Sensory Domain Binding

FRET can be used to detect the binding of a substrate-sensory protein domain, which induces a conformation change and results in FRET.

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FRET Application: Ligand-Receptor Binding

FRET can detect ligand-receptor binding, where the binding event causes a conformational change leading to FRET.

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FRET Application: Complex Unit Binding

FRET can be used in systems with two fluorophores attached to a complex unit. Upon stimulation, the complex undergoes a conformational change leading to FRET.

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FRET Application: Proteolytic Cleavage

FRET can be used to detect proteolytic cleavage events. When cleavage happens, the fluorophores are separated, and FRET is lost.

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BRET

Bioluminescence Resonance Energy Transfer (BRET) involves energy transfer from a bioluminescent donor to a fluorescent acceptor. It utilizes luciferase, a bioluminescent enzyme, as the donor.

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Heterodimerization effects

The process of forming heterodimers can modify the biochemical, pharmacological, and functional characteristics of receptors.

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In-vitro GPCR studies

Laboratory-based experiments investigating GPCR signaling and coupling using different approaches to analyze receptor function.

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Recombinant cell lines

Cells modified to express specific genes, often used for studying drug-receptor interactions and signal transduction.

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GPCR functionality assessment

Determining how well a GPCR is working by analyzing its interaction with drugs (ligands) and its downstream signaling pathways.

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GPCR dimerization assessment

Measuring the formation of GPCR heterodimers using techniques like FRET and BRET, which detect interactions between different proteins.

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GPCR internalization assessment

Analyzing how GPCRs move inside a cell, particularly during receptor activation and signaling.

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Targeting GPCRs with ligands

Different types of molecules (ligands) used to interact with GPCRs: agonists activate, antagonists block, biased agonists activate specific pathways, bivalent ligands target heterodimers, and allosteric modulators influence receptor behavior.

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Study Notes

GPCR Oligomerization

  • G-proteins are the third-largest gene family.
  • Previous assumptions: GPCRs function as monomers.
  • Recent evidence shows they function as oligomeric complexes, primarily dimers.
  • Oligomers are molecular complexes made of several monomeric units.
  • Dimers represent the simplest oligomeric arrangement, these can be homodimers or heterodimers.
  • Receptor heterodimers are a new area of research, changing our understanding of cell biology and drug discovery.
  • Heterodimers act as distinct functional units, differing in binding, signaling, trafficking, and subcellular localization compared to their protomer counterparts.
  • Heterodimerization allows for flexibility in receptor responses to ligands.
  • Heterodimers can bind heterodimer-specific ligands, which bind only when the receptor is in heterodimeric form.
  • GPCR dimerization during its lifecycle, plays a role in ligand-regulated regulation, signal transduction, and pharmacological diversity.
  • Dimerization during maturation and transport to the plasma membrane is essential for correct folding and exit from the ER.
  • Ligand binding can either promote or inhibit dimer formation.
  • GPCR heterodimers can affect both the intensity and selectivity of G-coupled signaling.
  • A single heterotrimeric G protein typically interacts with each GPCR dimer.
  • Heterodimerization can often promote the co-internalization of GPCRs after stimulation of only one protomer.
  • Different models exist to explain how GPCR dimers and oligomers form, such as lateral packing (contact dimer) which involve direct contact between transmembrane domains.
  • Domain-swapped model requires a change in the monomer's integrity by swapping transmembrane domains.

Significance

  • Heterodimers exhibit distinct functional properties.
  • Increased plasticity in responses to ligands.
  • Heterodimer-specific ligands bind only in the heterodimeric state.
  • Dimerization can affect GPCR maturation and transport to the cell surface.

Methods of Studying GPCR Oligomerization

  • Crosslinking of proteins (followed by Western blotting) detects receptor complexes.
  • Co-immunoprecipitation (Co-IP) of differentially epitope-tagged receptors followed by Western blot analysis indicates receptor-receptor interactions.
  • Fluorescence Resonance Energy Transfer (FRET) and Bioluminescence Resonance Energy Transfer (BRET) assess receptor-receptor proximity in living cells.
  • Mass spectrometry, for example MALDI, identifies reconstituted receptors and their interactions with heterotrimeric G proteins.

Methods of Detection

  • Co-immunoprecipitation is a useful technique for studying protein-protein interactions.

FRET - Fluorescence Resonance Energy Transfer

  • FRET is based on efficient distance-dependent energy transfer from the excited fluorescent donor molecule to the acceptor molecule.
  • CFP (cyan fluorescent protein) and YFP (yellow fluorescent protein) are commonly used as donor and acceptor pairs in FRET assays.
  • FRET occurs only when the donor and acceptor molecules are within a specific distance range (commonly 4-10 nm).

BRET - Bioluminescence Resonance Energy Transfer

  • The method used for detection relies on energy transfer between a bioluminescent donor and a fluorescent acceptor.
  • Luciferase (Rluc) from the sea pansy ( Renilla reinformis) is a frequent donor.

Summary

  • Heterodimers are present in cells and tissues.
  • Heterodimerization changes the biochemical, pharmacological, and functional properties of receptors.

GPCR Signaling and Coupling Assessment

  • GPCR signaling in cells expressing the receptors can be studied.

  • Recombinant cell lines expressing a single GPCR type can be used to study drug-receptor interactions and signal transduction.

  • Recombinant systems overexpressing multiple receptors and tagging them can assess receptor trafficking and heterodimerization.

  • Host cell lines, like CHO and HEK293, are frequently used in recombinant systems.

  • Functional GPCR assessment includes radioligand binding (for drug interactions), G-protein coupling assessment (e.g., Pertussis toxin, cholera toxin), intracellular calcium measurement (e.g., IP3, cAMP assay), and kinase activity assays.

Assessing Dimerization and Internalization

  • Dimerization can be assessed using FRET, BRET, etc.
  • Internalization can be measured using β-arrestin recruitment assays.

Approaches to Target GPCR Heterodimers

  • Bivalent ligands can bind two different receptors simultaneously and induce heterodimerization.
  • Dimeric ligands generated from monovalent ligands might induce and/or enhance dimerization.
  • Heterodimer-specific ligands bind to receptor binding sites only when the receptors form a heterodimer.

GPCRs As Drug Targets

  • GPCRs are targets for selective synthetic agonists and antagonists.
  • Biased agonists selectively activate arrestin-dependent signaling pathways, independent of G-protein activation.
  • Bivalent ligands target specific GPCR heterodimers.
  • Allosteric modulators can also be used to modify GPCR activity.

Receptor Tyrosine Kinases (RTKs)

  • RTKs are a type of receptor that plays an important role in cell signaling.

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