Podcast
Questions and Answers
What is the primary purpose of Co-Immunoprecipitation (Co-IP)?
What is the primary purpose of Co-Immunoprecipitation (Co-IP)?
- To capture proteins bound to a specific target protein. (correct)
- To perform Western blotting on isolated proteins.
- To analyze the molecular weight of proteins.
- To determine the structure of proteins.
Fluorescence Resonance Energy Transfer (FRET) relies on which of the following phenomena?
Fluorescence Resonance Energy Transfer (FRET) relies on which of the following phenomena?
- Distance-dependent energy transfer between fluorescent donor and acceptor molecules. (correct)
- Energy absorption by fluorescent receptors.
- Chemical reactions between fluorescent molecules.
- Direct binding of fluorescent proteins to one another.
What significant structure was revealed through MALDI mass spectrometry of GPCR and G protein complexes?
What significant structure was revealed through MALDI mass spectrometry of GPCR and G protein complexes?
- A trimer consisting of three identical GPCRs.
- A dimer formed from two G proteins.
- A monomer of a GPCR.
- A pentameric unit of two GPCR monomers and one heterotrimeric G protein. (correct)
Which technique would most likely be used to analyze receptor complexes after crosslinking proteins?
Which technique would most likely be used to analyze receptor complexes after crosslinking proteins?
What does the analysis of protein complexes through co-immunoprecipitation help identify?
What does the analysis of protein complexes through co-immunoprecipitation help identify?
What characteristic of bivalent ligands allows them to potentially increase receptor heterodimerization?
What characteristic of bivalent ligands allows them to potentially increase receptor heterodimerization?
What is the main advantage of using dimeric ligands over monovalent ligands?
What is the main advantage of using dimeric ligands over monovalent ligands?
What is a specific characteristic of the heterodimer-specific ligand?
What is a specific characteristic of the heterodimer-specific ligand?
Which statement best describes the potential of bivalent ligands in drug development?
Which statement best describes the potential of bivalent ligands in drug development?
How do dimeric ligands operate to enhance receptor interactions?
How do dimeric ligands operate to enhance receptor interactions?
What is the minimal oligomeric arrangement of GPCRs?
What is the minimal oligomeric arrangement of GPCRs?
How does heterodimerization impact GPCRs?
How does heterodimerization impact GPCRs?
What is one role of GPCR dimerization during receptor maturation?
What is one role of GPCR dimerization during receptor maturation?
What are receptor heterodimers expected to exhibit compared to their individual protomers?
What are receptor heterodimers expected to exhibit compared to their individual protomers?
What effect can ligand binding have on GPCR dimers?
What effect can ligand binding have on GPCR dimers?
What is an assumption about GPCRs that has been altered by recent evidence?
What is an assumption about GPCRs that has been altered by recent evidence?
What does it mean for GPCR heterodimers to bind heterodimer-specific ligands?
What does it mean for GPCR heterodimers to bind heterodimer-specific ligands?
What is the primary function of GPCR oligomerization in terms of cell biology?
What is the primary function of GPCR oligomerization in terms of cell biology?
Which example illustrates ligand-promoted receptor hetero-oligomerization?
Which example illustrates ligand-promoted receptor hetero-oligomerization?
What characterizes constitutive dimerization processes in GPCRs?
What characterizes constitutive dimerization processes in GPCRs?
How does GPCR heterodimerization affect signaling pathways?
How does GPCR heterodimerization affect signaling pathways?
Which statement about G-protein interactions with GPCR dimers is generally true?
Which statement about G-protein interactions with GPCR dimers is generally true?
What impact does heterodimerization have on receptors?
What impact does heterodimerization have on receptors?
What is a consequence of the co-internalization of GPCR heterodimers?
What is a consequence of the co-internalization of GPCR heterodimers?
What is an example of positive ligand binding cooperativity in GPCRs?
What is an example of positive ligand binding cooperativity in GPCRs?
Which of the following techniques is used for assessing GPCR internalization?
Which of the following techniques is used for assessing GPCR internalization?
Which model describes the interaction of GPCRs in heterodimerization?
Which model describes the interaction of GPCRs in heterodimerization?
Which cell lines are commonly used in recombinant systems to study GPCRs?
Which cell lines are commonly used in recombinant systems to study GPCRs?
What can inhibit the internalization of a GPCR heterodimer?
What can inhibit the internalization of a GPCR heterodimer?
What type of ligands can be used to selectively target GPCRs?
What type of ligands can be used to selectively target GPCRs?
To study drug-receptor interactions and signal transduction, what method is commonly used?
To study drug-receptor interactions and signal transduction, what method is commonly used?
What is assessed through the measurement of intracellular calcium in GPCR studies?
What is assessed through the measurement of intracellular calcium in GPCR studies?
Which approach involves tagging GPCRs and β-arrestin for studies?
Which approach involves tagging GPCRs and β-arrestin for studies?
What role do biased agonists serve in GPCR signaling?
What role do biased agonists serve in GPCR signaling?
What is the approximate maximum range for Resonance Energy Transfer to occur?
What is the approximate maximum range for Resonance Energy Transfer to occur?
Which factor is crucial for efficient energy transfer in FRET?
Which factor is crucial for efficient energy transfer in FRET?
Which of the following statements describes a scenario that results in FRET?
Which of the following statements describes a scenario that results in FRET?
Which characteristic defines Bioluminescence Resonance Energy Transfer (BRET)?
Which characteristic defines Bioluminescence Resonance Energy Transfer (BRET)?
What is the emission wavelength of light produced by Rluc in BRET?
What is the emission wavelength of light produced by Rluc in BRET?
What happens to the mutant GFP2 when it is close to the emitted blue light in a BRET system?
What happens to the mutant GFP2 when it is close to the emitted blue light in a BRET system?
Which process effectively causes 'No FRET' to occur?
Which process effectively causes 'No FRET' to occur?
What compound is catalyzed by Rluc in the presence of oxygen during BRET?
What compound is catalyzed by Rluc in the presence of oxygen during BRET?
Flashcards
Heterodimerization
Heterodimerization
When two different receptor proteins join together to form a functional unit.
Bivalent Ligands
Bivalent Ligands
Drugs designed to bind to two different receptors simultaneously, often promoting heterodimerization.
Dimeric Ligands
Dimeric Ligands
Drugs formed by linking two single molecule drugs (monovalent ligands) to target receptors.
Heterodimer Selective Drugs
Heterodimer Selective Drugs
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Heterodimer Specific Ligand
Heterodimer Specific Ligand
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GPCR Oligomerization
GPCR Oligomerization
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Homodimer
Homodimer
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Heterodimer
Heterodimer
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Distinct Signaling
Distinct Signaling
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Ligand Binding
Ligand Binding
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Receptor Maturation
Receptor Maturation
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Dynamic Regulation
Dynamic Regulation
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Trafficking Properties
Trafficking Properties
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Ligand-promoted dimerization
Ligand-promoted dimerization
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Constitutive dimerization
Constitutive dimerization
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Positive Cooperativity
Positive Cooperativity
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Negative Cooperativity
Negative Cooperativity
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G-protein selectivity
G-protein selectivity
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Co-internalization
Co-internalization
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Lateral Packing Model
Lateral Packing Model
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Domain-swapped Model
Domain-swapped Model
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Crosslinking of Proteins
Crosslinking of Proteins
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Co-Immunoprecipitation (Co-IP)
Co-Immunoprecipitation (Co-IP)
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FRET (Fluorescence Resonance Energy Transfer)
FRET (Fluorescence Resonance Energy Transfer)
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BRET (Bioluminescence Resonance Energy Transfer)
BRET (Bioluminescence Resonance Energy Transfer)
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MALDI Mass Spectrometry
MALDI Mass Spectrometry
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FRET
FRET
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FRET Range
FRET Range
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Spectral Overlap
Spectral Overlap
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FRET Application: Sensory Domain Binding
FRET Application: Sensory Domain Binding
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FRET Application: Ligand-Receptor Binding
FRET Application: Ligand-Receptor Binding
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FRET Application: Complex Unit Binding
FRET Application: Complex Unit Binding
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FRET Application: Proteolytic Cleavage
FRET Application: Proteolytic Cleavage
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BRET
BRET
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Heterodimerization effects
Heterodimerization effects
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In-vitro GPCR studies
In-vitro GPCR studies
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Recombinant cell lines
Recombinant cell lines
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GPCR functionality assessment
GPCR functionality assessment
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GPCR dimerization assessment
GPCR dimerization assessment
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GPCR internalization assessment
GPCR internalization assessment
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Targeting GPCRs with ligands
Targeting GPCRs with ligands
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Study Notes
GPCR Oligomerization
- G-proteins are the third-largest gene family.
- Previous assumptions: GPCRs function as monomers.
- Recent evidence shows they function as oligomeric complexes, primarily dimers.
- Oligomers are molecular complexes made of several monomeric units.
- Dimers represent the simplest oligomeric arrangement, these can be homodimers or heterodimers.
- Receptor heterodimers are a new area of research, changing our understanding of cell biology and drug discovery.
- Heterodimers act as distinct functional units, differing in binding, signaling, trafficking, and subcellular localization compared to their protomer counterparts.
- Heterodimerization allows for flexibility in receptor responses to ligands.
- Heterodimers can bind heterodimer-specific ligands, which bind only when the receptor is in heterodimeric form.
- GPCR dimerization during its lifecycle, plays a role in ligand-regulated regulation, signal transduction, and pharmacological diversity.
- Dimerization during maturation and transport to the plasma membrane is essential for correct folding and exit from the ER.
- Ligand binding can either promote or inhibit dimer formation.
- GPCR heterodimers can affect both the intensity and selectivity of G-coupled signaling.
- A single heterotrimeric G protein typically interacts with each GPCR dimer.
- Heterodimerization can often promote the co-internalization of GPCRs after stimulation of only one protomer.
- Different models exist to explain how GPCR dimers and oligomers form, such as lateral packing (contact dimer) which involve direct contact between transmembrane domains.
- Domain-swapped model requires a change in the monomer's integrity by swapping transmembrane domains.
Significance
- Heterodimers exhibit distinct functional properties.
- Increased plasticity in responses to ligands.
- Heterodimer-specific ligands bind only in the heterodimeric state.
- Dimerization can affect GPCR maturation and transport to the cell surface.
Methods of Studying GPCR Oligomerization
- Crosslinking of proteins (followed by Western blotting) detects receptor complexes.
- Co-immunoprecipitation (Co-IP) of differentially epitope-tagged receptors followed by Western blot analysis indicates receptor-receptor interactions.
- Fluorescence Resonance Energy Transfer (FRET) and Bioluminescence Resonance Energy Transfer (BRET) assess receptor-receptor proximity in living cells.
- Mass spectrometry, for example MALDI, identifies reconstituted receptors and their interactions with heterotrimeric G proteins.
Methods of Detection
- Co-immunoprecipitation is a useful technique for studying protein-protein interactions.
FRET - Fluorescence Resonance Energy Transfer
- FRET is based on efficient distance-dependent energy transfer from the excited fluorescent donor molecule to the acceptor molecule.
- CFP (cyan fluorescent protein) and YFP (yellow fluorescent protein) are commonly used as donor and acceptor pairs in FRET assays.
- FRET occurs only when the donor and acceptor molecules are within a specific distance range (commonly 4-10 nm).
BRET - Bioluminescence Resonance Energy Transfer
- The method used for detection relies on energy transfer between a bioluminescent donor and a fluorescent acceptor.
- Luciferase (Rluc) from the sea pansy ( Renilla reinformis) is a frequent donor.
Summary
- Heterodimers are present in cells and tissues.
- Heterodimerization changes the biochemical, pharmacological, and functional properties of receptors.
GPCR Signaling and Coupling Assessment
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GPCR signaling in cells expressing the receptors can be studied.
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Recombinant cell lines expressing a single GPCR type can be used to study drug-receptor interactions and signal transduction.
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Recombinant systems overexpressing multiple receptors and tagging them can assess receptor trafficking and heterodimerization.
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Host cell lines, like CHO and HEK293, are frequently used in recombinant systems.
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Functional GPCR assessment includes radioligand binding (for drug interactions), G-protein coupling assessment (e.g., Pertussis toxin, cholera toxin), intracellular calcium measurement (e.g., IP3, cAMP assay), and kinase activity assays.
Assessing Dimerization and Internalization
- Dimerization can be assessed using FRET, BRET, etc.
- Internalization can be measured using β-arrestin recruitment assays.
Approaches to Target GPCR Heterodimers
- Bivalent ligands can bind two different receptors simultaneously and induce heterodimerization.
- Dimeric ligands generated from monovalent ligands might induce and/or enhance dimerization.
- Heterodimer-specific ligands bind to receptor binding sites only when the receptors form a heterodimer.
GPCRs As Drug Targets
- GPCRs are targets for selective synthetic agonists and antagonists.
- Biased agonists selectively activate arrestin-dependent signaling pathways, independent of G-protein activation.
- Bivalent ligands target specific GPCR heterodimers.
- Allosteric modulators can also be used to modify GPCR activity.
Receptor Tyrosine Kinases (RTKs)
- RTKs are a type of receptor that plays an important role in cell signaling.
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