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Questions and Answers
What is the main sugar source that is primarily consumed by most people?
What is the main sugar source that is primarily consumed by most people?
Which component is involved in the energy investment phase of glycolysis?
Which component is involved in the energy investment phase of glycolysis?
How many total reactions occur in glycolysis?
How many total reactions occur in glycolysis?
What enzyme is chiefly responsible for the digestion of sucrose in the small intestine?
What enzyme is chiefly responsible for the digestion of sucrose in the small intestine?
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In which form does glucose exist as a six-membered ring structure?
In which form does glucose exist as a six-membered ring structure?
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What is the primary function of NAD in metabolic pathways?
What is the primary function of NAD in metabolic pathways?
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Which of the following enzymes is NOT a regulatory enzyme in glycolysis?
Which of the following enzymes is NOT a regulatory enzyme in glycolysis?
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What significant process occurs during the glycolytic pathway?
What significant process occurs during the glycolytic pathway?
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What condition does the regulatory mechanism of glycolysis aim to prevent?
What condition does the regulatory mechanism of glycolysis aim to prevent?
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Who first discovered NAD and its role in fermentation?
Who first discovered NAD and its role in fermentation?
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What molecule is produced when glucose is phosphorylated by ATP?
What molecule is produced when glucose is phosphorylated by ATP?
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What is the function of Hexokinase in the first step of glycolysis?
What is the function of Hexokinase in the first step of glycolysis?
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Which of the following represents the overall Gibbs free energy change for the first step of glycolysis?
Which of the following represents the overall Gibbs free energy change for the first step of glycolysis?
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During the phosphorylation of glucose, what is being hydrolyzed to provide energy?
During the phosphorylation of glucose, what is being hydrolyzed to provide energy?
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What must occur to the alcohol group (OH) on glucose before it can perform a nucleophilic attack?
What must occur to the alcohol group (OH) on glucose before it can perform a nucleophilic attack?
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The driven equilibrium of the phosphorylation of glucose lies in favor of which product?
The driven equilibrium of the phosphorylation of glucose lies in favor of which product?
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What is the overall transformation that occurs in the first step of glycolysis?
What is the overall transformation that occurs in the first step of glycolysis?
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Why is it necessary for Hexokinase to bind glucose in a water-free environment?
Why is it necessary for Hexokinase to bind glucose in a water-free environment?
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What hormone is primarily responsible for regulating glucose metabolism?
What hormone is primarily responsible for regulating glucose metabolism?
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What is the primary product of anaerobic glycolysis in muscle cells during intense exercise?
What is the primary product of anaerobic glycolysis in muscle cells during intense exercise?
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Which enzyme is responsible for converting lactate back to glucose in the liver?
Which enzyme is responsible for converting lactate back to glucose in the liver?
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How many steps in gluconeogenesis use the same enzymes as glycolysis?
How many steps in gluconeogenesis use the same enzymes as glycolysis?
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What compound is not a direct product when glucose undergoes anaerobic glycolysis?
What compound is not a direct product when glucose undergoes anaerobic glycolysis?
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What coenzyme is required by pyruvate decarboxylase in yeast for the fermentation process?
What coenzyme is required by pyruvate decarboxylase in yeast for the fermentation process?
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What is the main consequence of alcohol metabolism in the human body?
What is the main consequence of alcohol metabolism in the human body?
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What was estimated as the percentage of deaths worldwide attributable to alcohol use in 2014?
What was estimated as the percentage of deaths worldwide attributable to alcohol use in 2014?
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What role does the aspartic acid residue at the active site of hexokinase play?
What role does the aspartic acid residue at the active site of hexokinase play?
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What type of reaction is catalyzed by PhosphoGlucose Isomerase (PGI)?
What type of reaction is catalyzed by PhosphoGlucose Isomerase (PGI)?
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Which of the following best describes the conversion occurring in step 2 of glycolysis?
Which of the following best describes the conversion occurring in step 2 of glycolysis?
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What does the isomerisation reaction in glycolysis primarily involve?
What does the isomerisation reaction in glycolysis primarily involve?
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Which statement about the isomerisation reaction catalyzed by PhosphoGlucose Isomerase is true?
Which statement about the isomerisation reaction catalyzed by PhosphoGlucose Isomerase is true?
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What characterizes the change from glucose-6-phosphate to fructose-6-phosphate?
What characterizes the change from glucose-6-phosphate to fructose-6-phosphate?
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During the isomerisation of glucose-6-phosphate, which structural form of glucose is involved initially?
During the isomerisation of glucose-6-phosphate, which structural form of glucose is involved initially?
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What structural change occurs when glucose-6-phosphate is transformed into fructose-6-phosphate?
What structural change occurs when glucose-6-phosphate is transformed into fructose-6-phosphate?
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What is the role of the allosteric site in enzyme regulation?
What is the role of the allosteric site in enzyme regulation?
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Which molecule is primarily involved in the first step of glycolysis?
Which molecule is primarily involved in the first step of glycolysis?
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What happens to the enzyme when ATP binds to the regulatory site?
What happens to the enzyme when ATP binds to the regulatory site?
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Which step in glycolysis involves converting fructose 1,6-bisphosphate into glyceraldehyde-3-phosphate?
Which step in glycolysis involves converting fructose 1,6-bisphosphate into glyceraldehyde-3-phosphate?
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What type of reaction is catalyzed by aldolase in step 4 of glycolysis?
What type of reaction is catalyzed by aldolase in step 4 of glycolysis?
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What initiates the canonic glycolysis pathway?
What initiates the canonic glycolysis pathway?
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Which of the following is not produced during the first three steps of glycolysis?
Which of the following is not produced during the first three steps of glycolysis?
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What is the main role of ATP in glycolysis?
What is the main role of ATP in glycolysis?
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Which molecule is referred to as the end product of the glycolysis pathway?
Which molecule is referred to as the end product of the glycolysis pathway?
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Which of the following accurately describes a retro aldol reaction?
Which of the following accurately describes a retro aldol reaction?
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Which statement about glycolysis is true?
Which statement about glycolysis is true?
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What type of binding interaction occurs at the active site of enzymes during glycolysis?
What type of binding interaction occurs at the active site of enzymes during glycolysis?
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What can lead to the inactivation of an enzyme in glycolysis?
What can lead to the inactivation of an enzyme in glycolysis?
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Which of the following correctly identifies the last intermediate formed before pyruvate in glycolysis?
Which of the following correctly identifies the last intermediate formed before pyruvate in glycolysis?
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Study Notes
Biological Chemistry 1A - Metabolism
- Metabolism is the process of breaking down and re-synthesizing biological molecules.
- It involves a complex network of enzymatic reactions.
- The number of reactions can exceed 1000, even in organisms as simple as E. coli.
- Imbalances in metabolic processes can affect health and cause disease.
Books
- Students can use the course textbook as a primary resource.
- Additional material, if desired, includes "Biochemistry 7th Edition" by Berg, Tymoczko & Stryer.
- Chapters 15, 16, and 17 are recommended.
Introduction
- Metabolism involves the cycle of food providing energy and building blocks for DNA, protein, and membranes.
- Metabolic processes result in waste products like urea, ammonia, water, and carbon dioxide.
- Metabolic diseases like diabetes, metabolic syndrome, and obesity are major public health concerns.
- Diabetes affected 422 million globally in 2014, with a significant portion of deaths occurring before age 70.
- In the UK, 25% of the population has a BMI of 30 kg/m2 or higher (obesity).
Introduction - Diagram
- A diagram showing the metabolic cycle illustrates the continuous process of food being broken down for energy and the creation of building blocks.
- These building blocks support cellular components such as DNA, proteins, and cell membranes.
- The byproducts of the cycle are waste products such as urea, ammonia, water, and carbon dioxide.
Introduction - Fatty Acid Metabolism
- Understanding fatty acid metabolism is critical for disease control and health improvement.
Definitions
- Catabolism: The breakdown of complex molecules into simpler ones, releasing energy.
- Anabolism: The use of energy to build complex molecules from simpler ones.
- Metabolism: The sum of catabolism and anabolism.
- Cofactor: A non-protein substance, such as an ion or coenzyme, needed for enzyme function.
- Coenzyme: A non-protein organic molecule needed for enzyme function. It usually combines with an apoenzyme to form a complete, functional enzyme.
- Apoenzyme: The protein portion of an enzyme to which a coenzyme attaches to form the active enzyme.
Driving Metabolism - Thermodynamics
- The overall free-energy change (ΔG°) of a series of coupled reactions is equal to the sum of the individual step's free-energy changes.
- A negative ΔG° indicates a spontaneous reaction (occurs naturally).
- A zero ΔG° indicates the system is at equilibrium.
- A positive ΔG° indicates a non-spontaneous reaction (requires energy input).
- Examples of energy sources for metabolic processes include sugars and fatty acids.
- Complete oxidation of glucose releases significant energy (~−2850 kJ/mol).
- Complete oxidation of palmitate, a fatty acid, generates even more energy (~−9781 kJ/mol).
Driving Metabolism - ATP
- ATP (adenosine triphosphate) is a key energy source for cellular processes.
- ATP's structure features phosphoanhydride bonds that release energy when hydrolyzed (broken down).
- Intracellular ATP concentration is tightly regulated (2–10 mM).
- ATP's properties (resonance stabilization, electrostatic repulsion, and metal binding) contribute to its role as an energy currency.
Glycolysis
- Glycolysis is a series of reactions metabolizing glucose to pyruvate, releasing energy.
- It converts a six-carbon glucose molecule into two three-carbon pyruvate molecules.
- It produces two molecules of ATP.
- In humans, glucose in the blood enters cells via specific transporters.
Carbohydrates - Monosaccharides
- Monosaccharides are the simplest carbohydrate units.
- They are classified as either aldoses or ketoses based on the carbonyl group's position.
- Examples include ribose, glucose, and fructose, each with different molecular structures.
Carbohydrates - Polysaccharides
- Polysaccharides are formed from multiple monosaccharides linked together.
- The linkage process creates larger, more complex carbohydrate molecules, such as cellulose.
- Amylose (a starch) is also a polysaccharide.
Glycolysis - Glucose
- Glucose exists in both an alpha and beta form interconverting through mutarotation.
- This cycle involves the opening and closing of the ring structure.
Glycolysis - Overall Process
- Glycolysis involves 10 reactions occurring in three stages.
- The steps in the early stages require energy investment, and subsequent stages produce energy.
- The final product of the pathway is pyruvate; energy is released, stored, and transported.
Glycolysis - Steps
- Glycolysis is a sequence of enzyme-catalyzed reactions converting glucose into pyruvate.
- Detailed pathways of the enzymatic reactions are discussed, showing specific steps and intermediates.
Sources of Glucose
- Dietary sucrose, a disaccharide, is a major source of glucose.
- Sucrose is composed of glucose and fructose.
- Enzymatic processes in the mouth, stomach, and small intestine break down sucrose into its monosaccharide components (glucose and fructose).
- The human body typically consumes approximately 24 kg of sugar per year.
Glycolysis - Step 1
- Glucose phosphorylation into glucose-6-phosphate is catalyzed by hexokinase.
- Hexokinase's active binding site configuration changes form to complete catalysis.
- As part of the conversion, ATP's phosphoanhydride bond is cleaved.
- An aspartic acid residue in the active site acts as a base for glucose’s OH.
- This reaction is thermodynamically favorable because a significantly negative ΔG° change accompanies it.
Glycolysis - Step 2
- An intermediate step in the conversion of glucose into pyruvate is the isomerization of glucose-6-phosphate to fructose-6-phosphate.
- An isomerization reaction converts one molecule into another with the same formula.
- The reaction is catalyzed by phosphoglucose isomerase (PGI).
- The process involves the transformation between a 6-membered sugar ring to a 5-membered sugar ring.
Glycolysis - Step 3
- The next key step is the conversion of fructose-6-phosphate to fructose-1,6-bisphosphate, catalyzed by phosphofructokinase (PFK).
- Allosteric regulation by ATP controls the rate of this reaction.
- The enzyme shows a change in conformation when ATP binds.
- The presence of ATP slows down PFK, affecting the overall rate of glucose transformation to pyruvate.
Glycolysis - Step 4
- A key step in glycolysis is the breakdown of fructose-1,6-bisphosphate into glyceraldehyde-3-phosphate (GAP) and dihydroxyacetone phosphate (DHAP).
- This step is catalyzed by the aldolase enzyme.
- The enzyme reaction is a form of retro-aldol reaction.
- In this step, a larger molecule splits into two smaller molecules.
Glycolysis - Step 5
- Dihydroxyacetone phosphate (DHAP) undergoes isomerization into glyceraldehyde-3-phosphate (GAP) catalysed by triose phosphate isomerase(TIM).
- The reaction converts a ketone to an aldehyde.
- This step is catalyzed by the enzyme triose phosphate isomerase (TIM).
Glycolysis - Summary
- The first five steps of glycolysis transform a glucose molecule into two three-carbon molecules called glyceraldehyde-3-phosphate (GAP) and dihydroxyacetone phosphate (DHAP).
- The next steps produce energy.
NAD
- NAD (nicotinamide adenine dinucleotide) is a coenzyme important in redox reactions.
- It carries electrons between reactions.
- The coenzyme NAD+ was discovered by Arthur Harden in 1906.
Pyruvate - Where it Goes
- Pyruvate branching pathways include acetyl-CoA, lactate, and acetaldehyde.
- Acetyl CoA is a critical fuel source for further oxidation reactions.
- The fate of pyruvate depends on whether the conditions are aerobic or anaerobic.
Pyruvate - Anaerobic Conditions
- Pyruvate is converted to lactate under anaerobic conditions, catalyzed by lactate dehydrogenase (LDH).
- Lactate formation is important for regenerating NAD+.
- Anaerobic conditions arise in muscle tissue during strenuous activity.
Pyruvate - Aerobic Conditions
- Pyruvate is converted to acetyl-CoA under aerobic conditions, an intermediate crucial for the Krebs cycle.
Gluconeogenesis
- Gluconeogenesis is the synthesis of glucose from non-carbohydrate precursors, specifically pyruvate.
- It's a pathway crucial during periods of starvation.
- The Cori cycle links gluconeogenesis and glycolysis, with glucose produced in the liver from lactate released by muscles.
Other Compounds from Fermentation
- Microorganisms are used commercially to produce fine chemicals and pharmaceuticals.
- Examples include citric acid (food industry) and penicillin (pharmaceuticals).
- Fermentation technology is an expanding, important sector of biological chemistry.
Ethanol Production from Fermentation
- Fermentation methods account for a significant portion of global ethanol production.
- Other methods for ethanol production exist, such as synthetic production from ethylene.
- Using waste biomass to produce fuel is an increasingly important avenue of research, particularly as fossil fuels become more expensive and scarce.
Additional Notes
- The text mentions various enzymes, including hexokinase, phosphofructokinase, lactate dehydrogenase, pyruvate decarboxylase, alcohol dehydrogenase, and triose phosphate isomerase.
- The text covers relevant details regarding the process of glycolysis.
- The text describes the process of fermentation.
- The text also discusses the concept of thermodynamics in metabolism.
- Key figures, like Hans A. Krebs, are mentioned.
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Description
Test your knowledge on glycolysis, a crucial metabolic pathway in cellular respiration. This quiz covers key concepts such as the main sugar sources, enzymatic functions, and the overall mechanisms involved in the glycolytic process. Challenge yourself to answer questions about the energy investment phase and regulatory mechanisms!