Podcast
Questions and Answers
What percentage of transcription in a typical human cell is associated with making non-coding RNAs?
What percentage of transcription in a typical human cell is associated with making non-coding RNAs?
- 80% (correct)
- 20%
- 50%
- 10%
Which of the following is NOT a function of non-coding RNAs?
Which of the following is NOT a function of non-coding RNAs?
- Act as a scaffold
- Serve as a template for protein synthesis (correct)
- Block other RNA interactions
- Guide molecules to a location
How do non-coding RNAs bind to other molecules?
How do non-coding RNAs bind to other molecules?
- Through electrostatic interactions
- By covalent bonding
- Via complementary base pairing (correct)
- Using hydrogen bonds
Which role describes a non-coding RNA that binds to another RNA to prevent its function?
Which role describes a non-coding RNA that binds to another RNA to prevent its function?
In addition to guiding, what other roles can non-coding RNAs perform?
In addition to guiding, what other roles can non-coding RNAs perform?
Which of the following is a possible example of an interaction that non-coding RNAs can facilitate?
Which of the following is a possible example of an interaction that non-coding RNAs can facilitate?
Which statement about the functions of non-coding RNAs is accurate?
Which statement about the functions of non-coding RNAs is accurate?
Which of these molecules can non-coding RNAs bind to?
Which of these molecules can non-coding RNAs bind to?
What is the primary role of microRNAs (miRNAs) in RNA interference?
What is the primary role of microRNAs (miRNAs) in RNA interference?
How do small-interfering RNAs (siRNAs) primarily interact with their target mRNA?
How do small-interfering RNAs (siRNAs) primarily interact with their target mRNA?
What is the primary function of telomeres in eukaryotic chromosomes?
What is the primary function of telomeres in eukaryotic chromosomes?
What are the two sources of non-coding RNA (ncRNA) that can mediate RNA interference?
What are the two sources of non-coding RNA (ncRNA) that can mediate RNA interference?
What complex is responsible for mediating RNA interference in eukaryotic species?
What complex is responsible for mediating RNA interference in eukaryotic species?
What happens to telomeres as cells continue to divide?
What happens to telomeres as cells continue to divide?
What is a key feature of the signal recognition particle (SRP)?
What is a key feature of the signal recognition particle (SRP)?
What role does telomerase play in cell division?
What role does telomerase play in cell division?
Why can't DNA polymerase fully replicate the ends of chromosomes?
Why can't DNA polymerase fully replicate the ends of chromosomes?
What happens when the SRP binds to an SRP receptor?
What happens when the SRP binds to an SRP receptor?
How is RNA interference different from traditional gene regulation mechanisms?
How is RNA interference different from traditional gene regulation mechanisms?
What consequence occurs when telomeres become critically short?
What consequence occurs when telomeres become critically short?
What percentage of human protein-coding genes are estimated to be regulated by miRNAs?
What percentage of human protein-coding genes are estimated to be regulated by miRNAs?
Which of the following sequences is the repeat found in human telomeres?
Which of the following sequences is the repeat found in human telomeres?
What is the effect of rapidly dividing cells producing telomerase?
What is the effect of rapidly dividing cells producing telomerase?
What occurs to the daughter strand during DNA replication when a primer is removed?
What occurs to the daughter strand during DNA replication when a primer is removed?
What is one primary function of non-coding RNAs (ncRNAs) in the cell?
What is one primary function of non-coding RNAs (ncRNAs) in the cell?
How do ncRNAs guide one molecule to a specific location in the cell?
How do ncRNAs guide one molecule to a specific location in the cell?
In what way can an ncRNA act as a blocker?
In what way can an ncRNA act as a blocker?
What is a key difference between a decoy and a blocker ncRNA?
What is a key difference between a decoy and a blocker ncRNA?
Which function describes an ncRNA that has catalytic activity?
Which function describes an ncRNA that has catalytic activity?
What effect does binding of an ncRNA have on proteins?
What effect does binding of an ncRNA have on proteins?
Which of the following statements accurately describes scaffolding by ncRNAs?
Which of the following statements accurately describes scaffolding by ncRNAs?
Which function of ncRNAs involves preventing their target from performing its intended role?
Which function of ncRNAs involves preventing their target from performing its intended role?
What is the first step in the process of telomere lengthening?
What is the first step in the process of telomere lengthening?
How does HOTAIR influence gene expression?
How does HOTAIR influence gene expression?
Which of the following accurately describes the role of TERC during telomere lengthening?
Which of the following accurately describes the role of TERC during telomere lengthening?
Which of the following statements is true regarding the modifications made by protein complexes guided by HOTAIR?
Which of the following statements is true regarding the modifications made by protein complexes guided by HOTAIR?
What effect does double-stranded RNA have compared to antisense RNA?
What effect does double-stranded RNA have compared to antisense RNA?
What is the main function of siRNAs in relation to mRNA?
What is the main function of siRNAs in relation to mRNA?
Which component is involved in the telomere lengthening process?
Which component is involved in the telomere lengthening process?
Which of the following statements best distinguishes miRNAs from siRNAs?
Which of the following statements best distinguishes miRNAs from siRNAs?
What triggers the pause in translation when a polypeptide is being synthesized?
What triggers the pause in translation when a polypeptide is being synthesized?
Which component is critical for the adaptability of the type II CRISPR-Cas system?
Which component is critical for the adaptability of the type II CRISPR-Cas system?
During the expression phase of the CRISPR-Cas system, which of the following gets transcribed?
During the expression phase of the CRISPR-Cas system, which of the following gets transcribed?
What is the primary role of the tracrRNA in the CRISPR-Cas system?
What is the primary role of the tracrRNA in the CRISPR-Cas system?
Which phase follows adaptation in the CRISPR-Cas defense mechanism?
Which phase follows adaptation in the CRISPR-Cas defense mechanism?
What event characterizes the interference phase of the CRISPR-Cas system?
What event characterizes the interference phase of the CRISPR-Cas system?
Which short sequences are interspersed in the Crispr gene?
Which short sequences are interspersed in the Crispr gene?
What happens to the GTP-binding proteins during the binding of SRP and the SRP receptor?
What happens to the GTP-binding proteins during the binding of SRP and the SRP receptor?
What is the final outcome of the tracrRNA-crRNA complex forming with Cas9?
What is the final outcome of the tracrRNA-crRNA complex forming with Cas9?
What is the result of the bacterial cell's adaptation to a bacteriophage?
What is the result of the bacterial cell's adaptation to a bacteriophage?
Flashcards
Non-coding RNA (ncRNA)
Non-coding RNA (ncRNA)
RNA molecules that do not code for proteins, but have various roles in cellular functions.
ncRNA binding
ncRNA binding
ncRNAs bind to other molecules like small molecules, DNA, RNA, and proteins.
ncRNA Functions
ncRNA Functions
ncRNAs have diverse functions including scaffolding, guiding molecules, altering protein structure/function, possessing catalytic activity, blocking pathways, and acting as decoys.
RNA guide
RNA guide
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Gene Deactivation
Gene Deactivation
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Ribozyme
Ribozyme
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mRNA
mRNA
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Human Cell ncRNA Percentage
Human Cell ncRNA Percentage
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ncRNA function: Scaffold
ncRNA function: Scaffold
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ncRNA function: Guide
ncRNA function: Guide
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ncRNA function: Alter protein function/stability
ncRNA function: Alter protein function/stability
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ncRNA function: Ribozyme
ncRNA function: Ribozyme
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ncRNA function: Blocker
ncRNA function: Blocker
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ncRNA interaction with DNA/RNA
ncRNA interaction with DNA/RNA
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ncRNA interaction with proteins/molecules
ncRNA interaction with proteins/molecules
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ncRNA function: Decoy
ncRNA function: Decoy
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Telomere Lengthening
Telomere Lengthening
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Telomerase
Telomerase
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TERC
TERC
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HOTAIR Function
HOTAIR Function
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Chromatin Structure and Transcription
Chromatin Structure and Transcription
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Double-Stranded RNA (dsRNA)
Double-Stranded RNA (dsRNA)
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Small-Interfering RNA (siRNA)
Small-Interfering RNA (siRNA)
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microRNA (miRNA)
microRNA (miRNA)
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Telomere Shortening
Telomere Shortening
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DNA Polymerase and Telomeres
DNA Polymerase and Telomeres
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Telomerase Function
Telomerase Function
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ncRNA Role in Telomere Replication
ncRNA Role in Telomere Replication
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How does telomerase know where to add DNA?
How does telomerase know where to add DNA?
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Why are telomeres important?
Why are telomeres important?
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RNA interference (RNAi)
RNA interference (RNAi)
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RNA-induced silencing complex (RISC)
RNA-induced silencing complex (RISC)
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Signal recognition particle (SRP)
Signal recognition particle (SRP)
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SRP-RNA function
SRP-RNA function
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Protein targeting to the ER
Protein targeting to the ER
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SRP receptor
SRP receptor
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CRISPR-Cas System
CRISPR-Cas System
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CRISPR-Cas System: Adaptation
CRISPR-Cas System: Adaptation
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CRISPR-Cas System: Expression
CRISPR-Cas System: Expression
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CRISPR-Cas System: Interference
CRISPR-Cas System: Interference
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What is tracrRNA?
What is tracrRNA?
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What does Cas9 do?
What does Cas9 do?
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What is a spacer?
What is a spacer?
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What is a crRNA?
What is a crRNA?
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Why is the CRISPR-Cas system important?
Why is the CRISPR-Cas system important?
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Study Notes
Chinese Scientist Claims to Use CRISPR to Make Genetically Edited Babies
- A Chinese scientist, He Jiankui, claimed to have used CRISPR to edit the genes of human embryos
- He offered no supporting data or evidence for his assertions
- The claim sparked concern about the possibility of "designer babies"
Disgraced CRISPR-Baby Scientist Sentenced
- He Jiankui, the scientist who claimed to have produced genetically edited babies, was found guilty of conducting illegal medical practices
- He and two collaborators forged ethical review documents and misled doctors
- The court sentenced him to three years in prison
Nobel Prize in Chemistry 2020
- Jennifer Doudna and Emmanuelle Charpentier were awarded the Nobel Prize in Chemistry 2020
- Awarded "for the development of a method for genome editing"
- Shared the prize equally
Gene Expression- Non-Coding RNAs
- In a typical human cell, only about 20% of transcription involves the production of mRNAs, whereas 80% is associated with making non-coding RNAs (ncRNAs)
- ncRNAs perform a diverse set of functions
- They can bind to small molecules, DNA, or RNA, or to proteins
ncRNA Functions
- Scaffold: Bind to components like proteins, acting as a scaffold for complex formation
- Guide: Guide one molecule to a specific location in the cell (like guiding a protein to a specific location on DNA)
- Alteration of protein function or stability: ncRNA binding affects the protein's ability to be a catalyst or bind to other molecules.
- Ribozyme: RNA molecule with catalytic function (like peptidyltransferase activity of ribosomes)
- Blocker: ncRNA physically prevents or blocks a cellular process (e.g., blocks the binding of a ribosome to mRNA, inhibiting translation)
- Decoy: Recognizes other ncRNAs and sequesters them to prevent them from working
Overview of Non-Coding RNAs
- ncRNAs can bind to DNA or RNA molecules through complementary base pairing
- ncRNAs can bind to proteins or small molecules
- Stem-loop structures may bind or scaffold proteins, or form binding sites for small molecules
Role of ncRNAs in Eukaryotic DNA Replication
- Telomeres are composed of repeat sequences that protect the ends of linear eukaryotic chromosomes from becoming tangled or broken
- Telomeres shorten with each cell division, eventually leading to cell death
- Some cells, like stem cells, express telomerase, which adds telomere sequences, preventing shortening of telomeres
Effects of ncRNAs on Chromatin Structure and Transcription
- HOTAIR (Hox transcript antisense intergenic RNA) is an ncRNA that regulates transcription by acting as a scaffold
- It binds to two proteins complexes and guides them to particular genes, covalently modifying histones and silencing these modifications
Effects of ncRNAs on Translation and mRNA Degradation
- Double-stranded RNA (dsRNA) is more potent at inhibiting mRNA than antisense RNA
- This phenomenon is called RNA interference
- MicroRNAs (miRNAs) and small-interfering RNAs (siRNAs) are involved in RNA interference, regulating gene expression
- miRNAs are partially complementary to mRNA targets, and siRNAs are usually perfectly complementary.
Non-Coding RNAs and Protein Sorting
- Signal recognition particle (SRP) is a complex of protein and ncRNA that chaperones ribosomes to the ER
- SRP binds to an ER signal sequence and pauses translation
- SRP binds to an SRP receptor in the ER membrane, allowing the polypeptide to be threaded through a channel into the ER lumen.
Non-Coding RNAs and Genome Defense
- Some bacteria and archaea use the CRISPR-Cas system for defense against bacteriophages and transposons
- The type II CRISPR-Cas system contains genes for crRNAs, tracrRNA, and Cas proteins
- These phases (adaptation, expression, and interference) allow the bacteria to recognize foreign DNA, cleave it, and prevent infection
Role of ncRNAs in Human Disease and Plant Health
- Abnormal expression levels of miRNAs are found in almost all forms of human cancer. Some miRNAs are tumor suppressors, and others are oncogenes.
- HOTAIR is highly expressed in several cancers and behaves as an oncogene when overexpressed.
- Various ncRNAs are associated with neurological disorders.
- ncRNAs play essential roles in plant health, including seed development, growth, and stress responses. This research is useful for agriculture.
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