Enzymology Chapter Quiz
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Questions and Answers

What is formed when an apoenzyme combines with a cofactor?

  • Active site
  • Apoenzyme
  • Holoenzyme (correct)
  • Coenzyme
  • Which of the following is a function of coenzymes?

  • To provide additional reactive functional groups (correct)
  • To serve as the protein component of enzymes
  • To act solely as metal ions
  • To degrade the apoenzyme
  • What type of molecule typically acts as a coenzyme?

  • Large inorganic compounds
  • Proteins
  • Polysaccharides
  • Small organic molecules (correct)
  • Which of the following vitamins is commonly known to act as a coenzyme?

    <p>B-vitamins (B)</p> Signup and view all the answers

    Which of the following statements about cofactors is correct?

    <p>Metal ions can act as cofactors. (B)</p> Signup and view all the answers

    Which enzyme class is responsible for the hydrolysis of proteins?

    <p>Hydrolase (C)</p> Signup and view all the answers

    What type of reaction do decarboxylases catalyze?

    <p>Removal of carboxyl groups (D)</p> Signup and view all the answers

    Which enzyme class synthesizes larger molecules from smaller ones?

    <p>Ligase (C)</p> Signup and view all the answers

    Isomerases can facilitate which of the following reactions?

    <p>Conversion of an aldose to a ketose (A)</p> Signup and view all the answers

    The function of synthetases relates to which type of chemical reaction?

    <p>Joining two molecules into one (C)</p> Signup and view all the answers

    What is typically the composition of simple enzymes?

    <p>Only protein (B)</p> Signup and view all the answers

    What does the first digit of an enzyme's EC number represent?

    <p>The class of the enzyme (B)</p> Signup and view all the answers

    Which of the following statements about apoenzymes is true?

    <p>They cannot function without their cofactors. (D)</p> Signup and view all the answers

    Which class of enzymes is responsible for catalyzing oxidation-reduction reactions?

    <p>Oxidoreductases (A)</p> Signup and view all the answers

    What is the consequence of enzyme denaturation?

    <p>Loss of enzyme structure and function (C)</p> Signup and view all the answers

    Which of the following is NOT a major class of enzymes according to the IUBMB classification?

    <p>Polymerases (D)</p> Signup and view all the answers

    What defines a conjugated enzyme?

    <p>An enzyme with both protein and cofactor components. (A)</p> Signup and view all the answers

    What happens to enzymes when exposed to high temperatures?

    <p>They may undergo denaturation. (D)</p> Signup and view all the answers

    What happens to enzyme activity when pH deviates from its optimum level?

    <p>Enzyme activity can decrease due to denaturation (C)</p> Signup and view all the answers

    At what pH does the digestive enzyme pepsin exhibit maximum activity?

    <p>pH 2.0 (B)</p> Signup and view all the answers

    Which statement accurately describes the relationship between enzyme concentration and reaction rate?

    <p>As enzyme concentration increases, reaction rate increases (D)</p> Signup and view all the answers

    What occurs when substrate concentration is increased while enzyme concentration remains constant?

    <p>Reaction rate eventually reaches a saturation point (C)</p> Signup and view all the answers

    How does temperature generally affect reaction rates of enzymes?

    <p>Increasing temperature typically increases reaction rates (D)</p> Signup and view all the answers

    What happens when all active sites of an enzyme are occupied?

    <p>The reaction rate stabilizes at its maximum level (A)</p> Signup and view all the answers

    Which of the following statements is true regarding enzyme behavior?

    <p>Enzymes are not consumed and can be reused many times (C)</p> Signup and view all the answers

    What is the typical pH range within which most enzymes exhibit maximum activity?

    <p>pH 7.0 - 7.5 (B)</p> Signup and view all the answers

    What is formed when the substrate binds to an enzyme's active site?

    <p>Enzyme-Substrate Complex (A)</p> Signup and view all the answers

    Which model suggests that the active site of an enzyme is rigid and only fits specific substrates?

    <p>Lock &amp; Key Model (C)</p> Signup and view all the answers

    What term describes the ability of an enzyme to catalyze reactions for only one specific substrate?

    <p>Absolute Specificity (D)</p> Signup and view all the answers

    What happens to an enzyme when the temperature exceeds its optimum level?

    <p>It undergoes denaturation (C)</p> Signup and view all the answers

    What factor does NOT affect enzyme activity?

    <p>Color of the enzyme (C)</p> Signup and view all the answers

    Which type of specificity allows an enzyme to act on substrates with similar functional groups?

    <p>Group Specificity (D)</p> Signup and view all the answers

    Which amino acid property is crucial for determining the specificity of the substrate at the active site?

    <p>R-groups (side chains) of amino acids (C)</p> Signup and view all the answers

    Which of the following describes the enzyme's active site changing shape to better accommodate the substrate?

    <p>Induced Fit Model (B)</p> Signup and view all the answers

    What is the primary effect of a substrate concentration increase on enzyme activity, assuming other factors are constant?

    <p>It increases the reaction rate until saturation occurs. (B)</p> Signup and view all the answers

    Which type of specificity involves the enzyme acting on a particular type of chemical bond?

    <p>Linkage Specificity (B)</p> Signup and view all the answers

    What effect does an irreversible inhibitor have on an enzyme?

    <p>It permanently deactivates the enzyme. (D)</p> Signup and view all the answers

    How does a competitive inhibitor affect enzyme activity?

    <p>It binds to the active site and prevents substrate access. (B)</p> Signup and view all the answers

    What happens to enzymes when body temperature rises from 37ᵒC to 42ᵒC?

    <p>Enzymes denature and become non-functional. (D)</p> Signup and view all the answers

    What characteristic distinguishes non-competitive inhibitors from competitive inhibitors?

    <p>They bind to a site other than the active site. (B)</p> Signup and view all the answers

    What is the role of positive allosteric regulators?

    <p>They stabilize an active conformation of the enzyme. (B)</p> Signup and view all the answers

    Which statement best describes reversible competitive inhibition?

    <p>It can be overcome by increasing substrate concentration. (C)</p> Signup and view all the answers

    Which of the following describes allosteric enzymes?

    <p>They exhibit a quaternary structure. (A)</p> Signup and view all the answers

    What is a common characteristic of irreversible inhibitors?

    <p>They do not resemble substrates. (B)</p> Signup and view all the answers

    Which of the following does not represent a type of enzyme inhibition?

    <p>Permanent catalytic inhibition (D)</p> Signup and view all the answers

    What position does a non-competitive inhibitor bind to on the enzyme?

    <p>Any site other than the active site. (C)</p> Signup and view all the answers

    Flashcards

    Cofactor (Coenzyme)

    A non-protein part of an enzyme that helps it function.

    Apoenzyme

    The protein part of an enzyme, without any cofactors attached.

    Holoenzyme

    A complete active enzyme, formed by the apoenzyme combined with its cofactor.

    Coenzyme

    A type of cofactor, usually a small organic molecule, that helps enzymes.

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    Simple Enzyme

    An enzyme that consists only of a protein, without any non-protein parts.

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    What are enzymes?

    Enzymes are biological catalysts that accelerate biochemical reactions without being consumed in the process.

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    What are enzymes composed of?

    Most enzymes are made up of proteins, but some are made of RNA.

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    What is the structure of an enzyme?

    Enzymes have a specific three-dimensional structure that allows them to bind to specific molecules called substrates.

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    How are enzymes named?

    Enzymes are named based on the reaction they catalyze, often ending with the suffix '-ase'. For example, an enzyme that breaks down lactose is called lactase.

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    What is enzyme specificity?

    The specificity of an enzyme refers to its ability to bind to a specific substrate, like a lock and key.

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    What are conjugated enzymes?

    Conjugated enzymes are composed of two parts: a protein part called the apoenzyme, and a non-protein part called a cofactor.

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    What is an apoenzyme?

    The apoenzyme is the protein part of a conjugated enzyme, it cannot catalyze its specific reaction without its cofactor.

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    What are cofactors?

    Cofactors are non-protein molecules that help enzymes function. They can be metal ions or organic molecules called coenzymes.

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    Hydrolases

    Enzymes that break down molecules by adding water.

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    Lyases

    Enzymes that catalyze the addition or removal of atoms to or from double bonds.

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    Isomerases

    Enzymes that rearrange atoms within a molecule, changing its structure.

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    Ligases

    Enzymes that join two molecules together using energy from ATP.

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    Hydrolysis

    A reaction that breaks down bonds by adding water molecules.

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    Optimum pH (pHOPT)

    The pH at which an enzyme exhibits maximum activity.

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    Enzyme Denaturation

    A change in pH can cause an enzyme to lose its shape and function, becoming inactive.

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    Enzyme Function

    Enzymes accelerate chemical reactions by lowering activation energy.

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    Saturation Point

    The point at which increasing substrate concentration no longer increases reaction rate.

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    Enzyme Concentration and Reaction Rate

    The rate of an enzyme-catalyzed reaction is directly proportional to the amount of enzyme present.

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    Enzyme Reusability

    Enzymes are not consumed during a reaction, they are reusable, acting as catalysts.

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    Active Site

    The site on an enzyme where the substrate binds and the reaction takes place.

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    Substrate

    The substance that an enzyme acts on.

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    What is the active site of an enzyme?

    The specific region on an enzyme where substrate molecules bind and undergo chemical reactions.

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    How is the active site formed?

    The 3D structure formed by the folding of an enzyme's protein chain. This structure creates a 'crevice-like' cavity where the substrate binds.

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    What is an enzyme-substrate complex?

    The enzyme-substrate complex is a temporary association formed when the substrate binds to the active site of an enzyme. This binding facilitates the chemical reaction.

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    Explain the 'lock and key' model of enzyme action.

    The 'lock and key' model proposes that the active site of an enzyme has a rigid shape that perfectly complements the shape of the substrate.

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    What is the 'induced fit' model of enzyme action?

    The 'induced fit' model suggests that the active site of an enzyme is flexible and adapts its shape to accommodate the substrate.

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    What type of specificity is most restrictive?

    Absolute specificity means an enzyme can only catalyze a specific reaction for one single substrate.

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    What is group specificity?

    Group specificity means an enzyme can act on substrates that share a particular functional group.

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    What is linkage specificity?

    Linkage specificity refers to the enzyme's ability to target specific chemical bonds within a molecule, regardless of the rest of the molecule's structure.

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    What is stereochemical specificity?

    Stereochemical specificity means an enzyme can differentiate between stereoisomers, or molecules with the same chemical formula but different spatial arrangements.

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    What happens to enzymes when body temperature increases?

    An increase in body temperature from 37°C to 42°C can cause enzymes to lose their optimal shape and function, leading to a decrease in their activity.

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    What happens to a chemical reaction if the enzyme is non-functional?

    If an enzyme is non-functional, the chemical reaction it normally catalyzes will slow down or stop completely, as the enzyme is no longer able to facilitate the reaction.

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    What is an enzyme inhibitor?

    A substance that binds to an enzyme and reduces its catalytic activity, slowing down or stopping the enzyme's normal function.

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    What is reversible competitive inhibition?

    A type of enzyme inhibition where the inhibitor competes with the substrate for binding to the enzyme's active site. This can be reversed by increasing the substrate concentration.

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    What is reversible non-competitive inhibition?

    A type of enzyme inhibition where the inhibitor binds to a site on the enzyme other than the active site, altering the enzyme's shape and reducing its activity. This can be reversed by reducing the inhibitor concentration.

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    What is irreversible inhibition?

    A type of enzyme inhibition where the inhibitor binds to the enzyme's active site irreversibly, permanently deactivating the enzyme. This cannot be reversed by adding more substrate.

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    What are allosteric enzymes?

    Enzymes with a quaternary structure (composed of multiple protein chains) that have two or more binding sites: one active site for the substrate and another regulatory site for a regulator molecule. The binding of a regulator molecule to the regulatory site can alter the enzyme's shape and activity.

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    What is a positive allosteric regulator?

    A molecule that binds to an allosteric enzyme's regulatory site and increases the enzyme's activity, promoting the active conformation.

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    What is a negative allosteric regulator?

    A molecule that binds to an allosteric enzyme's regulatory site and decreases the enzyme's activity, compromising the active site and making it less efficient.

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    How does a positive allosteric regulator affect an enzyme's activity?

    The binding of a positive regulator to an allosteric enzyme enhances enzyme activity by promoting a more active conformation of the active site, allowing the enzyme to bind to the substrate more efficiently.

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    Study Notes

    Biochemistry - Enzymes and Coenzymes

    • The study covers enzymes and coenzymes, focusing on their characteristics, structure, nomenclature, function, specificity, activity factors, inhibition, regulation, medical uses, and active sites.

    Session Plan

    • General Characteristics of Enzymes
    • Enzyme Structure
    • Enzyme Nomenclature
    • Enzyme Function
    • Enzyme Specificity
    • Factors Affecting Enzyme Activity
    • Enzyme Inhibition
    • Regulation of Enzyme Activity
    • Medical Uses of Enzymes

    General Characteristics of Enzymes

    • Enzymes are typically proteins acting as catalysts in specific biochemical reactions within cells.
    • Each human cell contains thousands of different enzymes.
    • Each biochemical reaction within a cell needs a specific enzyme.
    • Most enzymes are globular proteins, but some are composed of RNA, catalyzing reactions involving nucleic acids.
    • Enzymes are proteins and undergo denaturation due to pH or temperature changes, which impact protein function in humans.

    Enzyme Action

    • Enzymes speed up reactions, lowering activation energy.
    • Without enzymes, reactions often occur significantly slower.
    • Reactants (e.g., glucose + O2) become products (e.g., CO2 + H2O).

    Nomenclature/Enzyme Classification

    • The International Union of Biochemistry and Molecular Biology (IUBMB) provides a standardized system for enzyme naming.
    • Each enzyme is assigned a trivial name (common name) and a systematic name (official name), such as EC 3.2.1.1 (hexokinase).

    Enzyme Code Number

    • Each enzyme has a unique code number (EC number) with four digits separated by dots.
    • The first digit determines the enzyme class.
    • The second, third, and fourth digits give more detailed information about the reaction the enzyme performs.

    Enzyme Classification

    • Enzymes are grouped into six major classes based on the type of reaction they catalyze.
    • These include oxidoreductases, transferases, hydrolases, lyases, isomerases, and ligases.

    Enzyme Nomenclature: Type of Reaction

    • The name of the enzyme often indicates the general type of reaction it catalyzes.
    • For example, "oxidase" indicates a redox reaction, and "hydrolase" indicates a reaction involving water.

    Enzyme Structure: Simple & Conjugated Enzymes

    • Simple enzymes consist only of protein.
    • Conjugated enzymes consist of a protein portion (apoenzyme) and a non-protein component (cofactor), which might be a metal ion or a coenzyme.
    • The combination of both forms the whole, functional enzyme (holoenzyme).

    Coenzymes and Cofactors

    • Coenzymes are non-protein organic molecules derived from vitamins or vitamin derivatives that function as cofactors in conjugated enzymes.
    • Metal ions also act as cofactors (e.g. Mg2+, Zn2+, Fe2+).

    Enzyme Definitions

    • Enzyme: A protein that catalyzes biochemical reactions.
    • Coenzyme: A non-protein (often vitamin-derived) molecule that assists an enzyme.
    • Cofactor: A non-protein molecule (including metal ions) that assists an enzyme.
    • Apoenzyme: The protein portion of a conjugated enzyme.
    • Holoenzyme: The complete, active enzyme (apoenzyme + cofactor).

    Enzyme Nomenclature

    • Enzyme names often indicate reaction type and substrate.
    • A substrate is the reactant an enzyme acts upon.
    • The enzyme binds to the substrate and catalyzes the reaction.

    Enzyme Activity: Factors Affecting It

    • Enzyme activity (rate at which an enzyme converts substrate to products) is affected by factors such as temperature, pH, substrate concentration, and enzyme concentration.

    Enzyme Activity: Effect of Temperature

    • Increased temperature generally increases enzyme activity, up to a certain optimal point (e.g., 37°C for human enzymes).
    • Beyond this optimum, excessive heat denatures the enzyme, decreasing activity.

    Enzyme Activity: Effect of pH

    • Each enzyme's activity is influenced by pH.
    • A narrow optimal pH range exists for each enzyme.
    • Changes outside this range hinder enzyme function due to denaturation.

    Enzyme Specificity

    • Enzymes exhibit various specificity levels.
    • Absolute specificity: An enzyme catalyzes only one specific reaction.
    • Group specificity: An enzyme catalyzes reactions on similar substrates.
    • Linkage specificity: An enzyme acts upon a specific chemical bond regardless of the larger substrate molecule,
    • Stereochemical Specificity: An enzyme distinguishes between stereoisomers, such as L- and D-amino acids

    Enzyme Active Sites

    • The active site is the region on an enzyme where the substrate binds.
    • It's a crevice-like cavity in the enzyme's tertiary structure.
    • Specific amino acid side chains in the active site interact with the substrate.

    Enzyme-Substrate Complex

    • When the substrate binds to the active site, an enzyme-substrate complex forms.
    • This complex facilitates the chemical reaction, converting the substrate to product/s, much more rapidly than in the absence of an enzyme.

    Lock and Key Model

    • In the lock-and-key model, the active site has a rigid shape, and the substrate must fit perfectly.
    • This model is not completely accurate, as it does not account for flexibility and induced shape changes.

    Induced Fit Model

    • The induced-fit model suggests that the active site changes shape upon substrate binding to better accommodate the substrate in the complex, and thus optimize the reaction.

    Enzyme Inhibition

    • Enzyme inhibition is the interruption of an enzyme's catalytic activity.
    • Inhibitors reduce enzyme activity either reversibly or irreversibly.

    Enzyme Inhibition Types

    • Competitive inhibition: The inhibitor structurally resembles the substrate and competes for binding to the active site.
    • Noncompetitive inhibition: The inhibitor binds to an enzyme site other than the active site, changing the enzyme's conformation, and preventing the substrate from binding.
    • Irreversible inhibition: The inhibitor forms a covalent bond with the enzyme, permanently inactivating it.

    Allosteric Enzymes

    • Allosteric enzymes possess more than one binding site; one for the substrate and one for allosteric regulators.
    • Binding of regulators alters the enzyme's three-dimensional structure, impacting its active site's ability to bind to the substrate.
    • Positive allosteric regulators enhance enzyme activity, while negative allosteric regulators decrease activity.

    Substrate Concentration: Effect on Reaction Rate

    • At low substrate concentrations, the reaction rate increases linearly with substrate concentration.
    • At high substrate concentrations, the reaction rate reaches a maximum, where all active sites are occupied.

    Enzyme Concentration: Effect on Reaction Rate

    • Increasing enzyme concentration increases the reaction rate, as more enzymes are available to catalyze the reaction.

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