DNA Replication Quiz

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Questions and Answers

What is the crucial role of primase in the initiation of lagging strand synthesis?

  • Synthesizing an RNA primer to provide a starting point for DNA polymerase III. (correct)
  • Connecting Okazaki fragments to form a continuous DNA strand.
  • Elongating Okazaki fragments by adding DNA nucleotides.
  • Removing RNA primers to allow DNA polymerase III to function.

Why is the synthesis of the lagging strand considered more complex than the leading strand?

  • It uses a 3' to 5' DNA polymerase.
  • It requires only one type of DNA polymerase.
  • It involves the synthesis of Okazaki fragments. (correct)
  • It proceeds continuously from the replication fork.

What enzymatic activity is associated with DNA polymerase I in the context of lagging strand synthesis?

  • Joining Okazaki fragments.
  • Synthesizing RNA primers de novo.
  • Adding nucleotides to the 3' end of the leading strand.
  • Removing RNA primers and replacing them with DNA. (correct)

What would be the immediate consequence if DNA ligase were non-functional during DNA replication?

<p>Okazaki fragments would remain as unjoined segments. (C)</p> Signup and view all the answers

Considering the orientation of the leading strand template, in which direction does DNA polymerase III add nucleotides?

<p>5' to 3' (B)</p> Signup and view all the answers

What is the role of the 3' to 5' exonuclease activity in DNA synthesis?

<p>To remove incorrectly inserted nucleotides during DNA replication. (D)</p> Signup and view all the answers

What is the function of single-stranded binding proteins (SSB) during DNA replication?

<p>Preventing the re-annealing of separated DNA strands. (D)</p> Signup and view all the answers

If a mutation occurred that disabled the 5' to 3' exonuclease activity of DNA polymerase I, what would be the most likely outcome?

<p>RNA primers would remain in the DNA sequence after replication. (A)</p> Signup and view all the answers

If a mutation occurred that disabled DNA polymerase I, what would be the most likely immediate consequence during DNA replication?

<p>RNA primers would not be removed from the lagging strand. (A)</p> Signup and view all the answers

During DNA replication, what would happen if the helicase enzyme were non-functional?

<p>The replication fork would not form, preventing strand separation. (A)</p> Signup and view all the answers

In bacterial cells, transcription and translation occur in the same cellular compartment due to the absence of a nucleus. How does this affect the timing and location of protein synthesis compared to eukaryotes?

<p>Translation can begin before transcription is complete. (A)</p> Signup and view all the answers

Imagine a scenario where a bacterial cell's ligase enzyme is mutated, rendering it non-functional. What direct consequence would you expect to observe during DNA replication?

<p>Discontinuous lagging strand with unjoined Okazaki fragments. (A)</p> Signup and view all the answers

During transcription in bacteria, which enzyme is directly responsible for synthesizing mRNA from a DNA template?

<p>RNA Polymerase (B)</p> Signup and view all the answers

What would be the most likely immediate effect of a mutation that inactivates primase on DNA replication?

<p>Replication would not occur on either the leading or lagging strand. (D)</p> Signup and view all the answers

Considering the central dogma, how would blocking transcription in a bacterial cell most directly affect cellular processes?

<p>It would prevent the synthesis of RNA. (C)</p> Signup and view all the answers

What key enzymatic function is necessary for proofreading during DNA replication to maintain the integrity of the newly synthesized DNA strand?

<p>3' to 5' exonuclease activity (B)</p> Signup and view all the answers

If a bacterial cell's RNA polymerase is mutated such that it can no longer bind to the promoter region, what is the most likely consequence?

<p>Transcription of the gene will not occur. (D)</p> Signup and view all the answers

Consider a bacterial gene with a mutated leader sequence. Which aspect of gene expression would be most directly affected?

<p>The efficiency of ribosome binding to the mRNA. (B)</p> Signup and view all the answers

A researcher introduces a mutation in the terminator sequence of a bacterial gene. What is the most likely outcome of this mutation?

<p>The mRNA transcript will be longer than normal. (D)</p> Signup and view all the answers

A bacterial cell has a mutation that impairs the function of rho-dependent termination. What is the most likely consequence of this mutation during transcription?

<p>Read-through transcription beyond the normal termination point. (C)</p> Signup and view all the answers

In a bacterial operon, a mutation in the operator sequence prevents the repressor protein from binding. What effect will this have on the transcription of the operon's genes?

<p>Transcription will be constitutive (always on). (A)</p> Signup and view all the answers

A bacterium is engineered to express a eukaryotic gene. However, the resulting protein is shorter than expected. What is a likely explanation for this observation?

<p>The eukaryotic gene contains introns that the bacteria cannot process. (B)</p> Signup and view all the answers

What occurs during the elongation phase of bacterial transcription?

<p>RNA polymerase synthesizes a complementary mRNA strand. (A)</p> Signup and view all the answers

In bacterial gene expression, what would be the direct result of a mutation that disables the Shine-Dalgarno sequence?

<p>The ribosome would not be able to bind to the mRNA. (D)</p> Signup and view all the answers

In bacterial gene expression, what is a key difference from eukaryotic gene expression regarding transcription and translation?

<p>Bacterial transcription and translation can occur simultaneously, as there is no nuclear envelope separating the processes. (C)</p> Signup and view all the answers

Considering the semi-conservative nature of DNA replication, what would be the predicted outcome after three generations of replication, starting with one double-stranded DNA molecule?

<p>Half of the DNA molecules would consist of one original strand and one newly synthesized strand, while the other half would consist of entirely new strands. (B)</p> Signup and view all the answers

What is the significance of the central dogma of molecular biology?

<p>It illustrates the flow of genetic information typically from DNA to RNA to protein. (C)</p> Signup and view all the answers

What is the role of initiation in bacterial replication, and how might it be affected by mutations?

<p>Initiation involves the binding of initiator proteins to specific DNA sequences; mutations in these sequences could prevent the start of replication. (D)</p> Signup and view all the answers

What is a major difference between the structure of DNA and RNA that contributes to their distinct roles in the central dogma?

<p>DNA contains thymine, providing stability for long-term storage of genetic information, whereas RNA contains uracil, enabling it to participate in transient processes. (C)</p> Signup and view all the answers

In the context of the central dogma, how do proteins contribute to the genotype-phenotype relationship?

<p>Proteins, as the end products of gene expression, carry out various functions that manifest as observable traits. (D)</p> Signup and view all the answers

What is the role of termination during DNA replication?

<p>Termination involves dismantling the replication fork, concluding DNA synthesis. (D)</p> Signup and view all the answers

How does the non-template strand relate to the mRNA transcript produced during transcription?

<p>It has the same sequence, except T is replaced by U, and runs in the same 5' to 3' direction. (B)</p> Signup and view all the answers

During transcription, what is role of the template strand of DNA?

<p>It serves as the template for RNA polymerase to synthesize a complementary mRNA strand. (D)</p> Signup and view all the answers

What is the role of the sigma factor in transcription?

<p>It binds to the promoter region, facilitating the initiation of transcription. (A)</p> Signup and view all the answers

How would a mutation that impairs the function of the termination sequence affect transcription?

<p>Transcription would continue indefinitely, producing an abnormally long mRNA transcript. (B)</p> Signup and view all the answers

Which direction does RNA polymerase move along the DNA template strand during elongation?

<p>3' to 5', synthesizing mRNA in the 5' to 3' direction. (A)</p> Signup and view all the answers

How does the unwinding of DNA during transcription contribute to the process?

<p>It exposes the nucleotide bases on the template strand, allowing for complementary base pairing with incoming nucleotides. (B)</p> Signup and view all the answers

What would be the most likely consequence if RNA polymerase lacked the ability to proofread its work?

<p>The mRNA transcripts would contain more errors, potentially leading to non-functional proteins. (B)</p> Signup and view all the answers

In what way does the nucleotide pool directly participate during the elongation phase of transcription?

<p>It serves as the source of nucleotides that are added to the growing mRNA transcript. (D)</p> Signup and view all the answers

In bacterial transcription termination, what is the immediate fate of the mRNA transcript?

<p>It undergoes immediate translation into protein. (B)</p> Signup and view all the answers

What is the crucial role of the ribosome during translation?

<p>It catalyzes the formation of peptide bonds between amino acids. (D)</p> Signup and view all the answers

Which of the following is a key distinction in the central dogma's application in bacteria compared to eukaryotes?

<p>Coupled transcription and translation occur in bacteria. (D)</p> Signup and view all the answers

If a bacterial tRNA molecule has the anticodon 3'-GAC-5', which mRNA codon can it recognize and bind to?

<p>5'-GUC-3' (A)</p> Signup and view all the answers

Considering the degeneracy of the genetic code, what is the most likely effect of a single nucleotide change in the third position of a codon?

<p>It is least likely to change the encoded amino acid. (A)</p> Signup and view all the answers

Which component of the ribosome is responsible for catalyzing the formation of peptide bonds during translation?

<p>The ribosomal RNA (rRNA). (D)</p> Signup and view all the answers

What is the role of the fMet (N-formylmethionine) in bacterial translation?

<p>It is the first amino acid incorporated into a bacterial polypeptide. (B)</p> Signup and view all the answers

How do bacterial ribosomes identify the correct start codon (AUG) to initiate translation?

<p>Through complementary base pairing between the rRNA and a sequence upstream of the AUG codon. (A)</p> Signup and view all the answers

A mutation in a bacterial gene results in a tRNA that now recognizes the codon UGU (normally coding for cysteine) and inserts serine instead. What is the most likely consequence of this mutation?

<p>Proteins containing serine at UGU sites are likely to misfold or have altered function. (D)</p> Signup and view all the answers

In a bacterial cell, a specific mRNA sequence reads 5'-AUG-GGC-UAU-UAA-3'. What sequence of amino acids will be produced from this mRNA during translation?

<p>fMet-Glycine-Tyrosine-STOP (A)</p> Signup and view all the answers

What is the functional significance of start and stop codons in mRNA during translation?

<p>They determine the reading frame and signal the beginning and end of the polypeptide chain. (B)</p> Signup and view all the answers

Considering the structure of a ribosome, what is the role of the 30S subunit in bacterial translation?

<p>It binds the mRNA and ensures correct codon-anticodon pairing. (D)</p> Signup and view all the answers

A bacterial cell is treated with a drug that inhibits the function of aminoacyl-tRNA synthetases. What direct effect will this have on translation?

<p>tRNA molecules will not be charged with their corresponding amino acids. (B)</p> Signup and view all the answers

Which of the following is a key difference between the template strand and the non-template strand of DNA in bacterial transcription?

<p>The template strand is complementary to the mRNA sequence. (D)</p> Signup and view all the answers

What is the most likely outcome if a mutation occurs in the gene encoding release factors in bacteria?

<p>The ribosome will stall at the stop codon, preventing termination. (C)</p> Signup and view all the answers

Flashcards

Central Dogma

The flow of genetic information: DNA → RNA → Protein.

Replication

The process of copying DNA to produce identical DNA strands.

Semi-Conservative Replication

Each new DNA molecule consists of one original and one new strand.

Transcription

The process of creating RNA from a DNA template.

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Translation

Process where ribosomes synthesize proteins using mRNA.

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Initiation

The first step in replication, transcription, and translation where processes begin.

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Elongation

The process of lengthening the new strand of RNA or DNA.

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Termination

The final step in replication, transcription, and translation where the processes end.

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Helicase

An enzyme that unwinds the DNA double helix at the replication fork.

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Replication Fork

The Y-shaped region where DNA strands separate for replication.

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Leading Strand

The DNA strand synthesized continuously in the same direction as the replication fork.

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DNA Polymerase III

The enzyme responsible for adding nucleotides to the growing DNA strand during replication.

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RNA Primer

A short segment of RNA that initiates DNA synthesis.

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Eukaryotic vs. Bacterial Transcription

Eukaryotic transcription occurs in the nucleus; bacterial transcription occurs in the cytoplasm.

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RNA Polymerase

An enzyme that synthesizes RNA from a DNA template during transcription.

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Template Strand

The DNA strand that RNA polymerase uses as a guide to synthesize RNA.

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Nontemplate Strand

The DNA strand that is not used during RNA transcription; it is complementary to the template strand.

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Direction of RNA Synthesis

RNA is synthesized in the 5’ to 3’ direction, complementary to the template strand.

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Sigma Factor

A protein that helps RNA polymerase identify the promoter region on DNA during initiation of transcription.

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Transcription Termination Site

The sequence at which RNA polymerase stops transcription and releases the newly synthesized mRNA.

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Early mRNA Transcript

The initial product of transcription before any processing like splicing occurs.

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Complementary Base Pairing

The pairing of adenine with uracil and cytosine with guanine in RNA during transcription.

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Primase

An enzyme that adds RNA primers to initiate DNA synthesis.

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Lagging Strand

The template strand that is synthesized discontinuously in short segments called Okazaki fragments.

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Bacterial Genes Organization

The specific arrangement of genes in bacterial DNA that influences function and expression.

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Okazaki Fragments

Short segments of DNA synthesized on the lagging strand.

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Promoter Region

A specific DNA sequence where RNA polymerase binds to initiate transcription.

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Leader Sequence

A segment of RNA that guides the beginning of transcription by providing context for the start codon.

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3’ to 5’ Orientation

Direction of the leading strand template that allows continuous synthesis.

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Ligase

An enzyme that connects unjoined DNA fragments and nicks.

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Transcription Steps

The process of transcription involves initiation, elongation, and termination.

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Termination Signals

Specific sequences in DNA that signal the end of transcription, causing RNA polymerase to detach.

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Polypeptide Coding

The portion of a gene that contains the information to produce a polypeptide chain.

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Cytoplasmic Transactions

Processes like transcription and translation happen in the cytoplasm of bacterial cells.

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Codon

A sequence of three nucleotides on mRNA that specifies an amino acid.

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Anticodon

A sequence of three nucleotides on tRNA that pairs with a codon on mRNA.

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Transfer RNA (tRNA)

Molecule that brings amino acids to ribosomes during protein synthesis.

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Ribosome

Cellular structure where protein translation occurs; made of rRNA and proteins.

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Ribozyme

An RNA molecule that acts as an enzyme in the ribosome.

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Start Codon

The specific codon (AUG) that signals the beginning of translation.

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Stop Codon

Codons (UAA, UAG, UGA) that signal the end of protein synthesis.

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Genetic Code

The set of rules by which information encoded in mRNA is translated into amino acids.

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Elongation in Translation

The stage of translation where the amino acid chain grows.

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Unique Features in Bacteria

Bacteria have specific processes and efficiency in transcription and translation.

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Second Base Position

The second nucleotide position in a codon relevant for coding amino acids.

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Amino Acids

Building blocks of proteins coded by codons.

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Study Notes

Information Flow in Biology

  • The genotype (genetic information) influences the phenotype (observable traits).
  • DNA replication duplicates DNA.
  • Transcription converts DNA to RNA.
  • Translation converts RNA to protein.
  • The environment interacts with the genotype to create the phenotype.

Biologically Important Polymers

  • DNA, RNA, and protein are important biological polymers.

Central Dogma in Bacteria

  • DNA replicates.
  • DNA transcribes into RNA.
  • RNA translates into protein.
  • Each step has initiation and elongation stages.

DNA Discovery

  • This section is missing.

Mortality Experience in 2017

  • In 2017, 2,813,503 resident deaths were registered in the United States.
  • The age-adjusted death rate was 731.9 deaths per 100,000 U.S. standard population.
  • Life expectancy at birth was 78.6 years.
  • The 15 leading causes of death in 2017 were:
    • Diseases of the heart (heart disease)
    • Malignant neoplasms (cancer)
    • Accidents (unintentional injuries)
    • Chronic lower respiratory diseases
    • Cerebrovascular diseases (stroke)
    • Alzheimer disease
    • Diabetes mellitus (diabetes)
    • Influenza and pneumonia
    • Nephritis, nephrotic syndrome, and nephrosis (kidney disease)
    • Intentional self-harm (suicide)
    • Chronic liver disease and cirrhosis
    • Septicemia
    • Essential hypertension and hypertensive renal disease (hypertension)
    • Parkinson disease
    • Pneumonitis due to solids and liquids

Pneumococcal Pneumonia

  • Sputum smear shows bacteria related to the pneumonia condition.

Studies on the Chemical Nature of the Substance

  • The evidence supports the idea that a nucleic acid of the deoxyribose type is the fundamental unit of the transforming principle of Pneumococcus Type III.

DNA Structure

  • DNA is a double helix.
  • The backbone consists of sugars and phosphates.
  • Base pairs (A-T, G-C) connect the two strands through hydrogen bonds.

Review Structure of DNA

  • DNA has a double helix shape.
  • The sides of the helix are made of alternating sugar and phosphate molecules.
  • The rungs of the helix are made of base pairs (adenine with thymine and guanine with cytosine.)
  • DNA has a 5' end and a 3' end.
  • DNA has major and minor grooves.

Replication is a Semi-Conservative Process

  • DNA replication uses a semi-conservative process.
  • The two strands of the double helix are separated.
  • Each separated strand serves as a template to build a new strand.
  • The result is two new DNA molecules, each with one original strand and one new strand.

DNA Replication Stages

  • Initiation occurs at the origin of replication.
  • Elongation involves replication forks moving in two directions.
  • Termination happens when the replication forks meet.

Major Steps & Enzymes in DNA Elongation

  • The chromosome is unwound to form a replication fork.
  • The leading strand is synthesized continuously toward the replication fork.
  • The lagging strand is synthesized discontinuously in fragments (Okazaki fragments), away from the fork.
  • Enzymes like Primase, DNA Polymerase, and Ligase are involved in elongation.

Transcription Initiation, Elongation & Termination

  • Initiation involves RNA polymerase binding to a promoter region.
  • Elongation involves RNA polymerase moving along the DNA template.
  • Termination involves RNA polymerase reaching a termination sequence.

Transcription Initiation Details

  • RNA polymerase binds to a promoter region where transcription starts.
  • The -10 and -35 sequences are key in initiation.
  • Sigma (σ) factor helps in accurate binding to the promoter region.
  • An open complex is formed, DNA unwinds, and transcription begins.
  • Sigma (σ) factor detaches after transcription begins.

Transcription Elongation

  • RNA polymerase continues moving, synthesizing RNA from the template strand.
  • mRNA is synthesized in the 5' to 3' direction.

Transcription Termination

  • RNA polymerase reaches a termination sequence and stops.
  • Stem-loop structures in mRNA can play a role in termination.
  • Other mechanisms of termination exist too.

Translation

  • The genetic code translates mRNA to amino acids.
  • tRNA molecules carry specific amino acids to the ribosome.
  • Ribosomes assemble proteins based on the mRNA codons.

Translation: Initiation

  • N-formylmethionine-tRNA is often the first tRNA to bind.
  • Ribosome subunits and initiation factors are involved in complex binding processes.

Translation: Elongation

  • tRNA molecules bring amino acids to the ribosome.
  • Peptide bonds are formed to connect amino acids.
  • The ribosome moves along the mRNA, adding amino acids to the growing polypeptide chain.

Translation: Termination

  • Stop codons on the mRNA signal the end of translation.
  • Release factors bind to the stop codon to release the polypeptide.

Ribosome: Location & Function

  • Ribosomes are the sites of protein synthesis.
  • Ribosomes are made of RNA and proteins.
  • 30S and 50S subunits combine into the 70S ribosome in bacteria.
  • Ribosomes are ribozymes; they catalyze peptide bond formation.

Unique Organization of Bacterial Genes

  • Polycistronic mRNAs typically encode more than one protein.
  • Monocistronic mRNAs encode a single protein.
  • Bacterial mRNA does not have post-transcriptional processing.

Transfer RNA (tRNA) Structure

  • tRNA molecules are essential for translation.
  • tRNA has specific acceptor stems and an anticodon loop.
  • The anticodon loop pairs with mRNA codons.

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