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Questions and Answers
What is the crucial role of primase in the initiation of lagging strand synthesis?
What is the crucial role of primase in the initiation of lagging strand synthesis?
Why is the synthesis of the lagging strand considered more complex than the leading strand?
Why is the synthesis of the lagging strand considered more complex than the leading strand?
What enzymatic activity is associated with DNA polymerase I in the context of lagging strand synthesis?
What enzymatic activity is associated with DNA polymerase I in the context of lagging strand synthesis?
What would be the immediate consequence if DNA ligase were non-functional during DNA replication?
What would be the immediate consequence if DNA ligase were non-functional during DNA replication?
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Considering the orientation of the leading strand template, in which direction does DNA polymerase III add nucleotides?
Considering the orientation of the leading strand template, in which direction does DNA polymerase III add nucleotides?
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What is the role of the 3' to 5' exonuclease activity in DNA synthesis?
What is the role of the 3' to 5' exonuclease activity in DNA synthesis?
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What is the function of single-stranded binding proteins (SSB) during DNA replication?
What is the function of single-stranded binding proteins (SSB) during DNA replication?
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If a mutation occurred that disabled the 5' to 3' exonuclease activity of DNA polymerase I, what would be the most likely outcome?
If a mutation occurred that disabled the 5' to 3' exonuclease activity of DNA polymerase I, what would be the most likely outcome?
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If a mutation occurred that disabled DNA polymerase I, what would be the most likely immediate consequence during DNA replication?
If a mutation occurred that disabled DNA polymerase I, what would be the most likely immediate consequence during DNA replication?
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During DNA replication, what would happen if the helicase enzyme were non-functional?
During DNA replication, what would happen if the helicase enzyme were non-functional?
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In bacterial cells, transcription and translation occur in the same cellular compartment due to the absence of a nucleus. How does this affect the timing and location of protein synthesis compared to eukaryotes?
In bacterial cells, transcription and translation occur in the same cellular compartment due to the absence of a nucleus. How does this affect the timing and location of protein synthesis compared to eukaryotes?
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Imagine a scenario where a bacterial cell's ligase enzyme is mutated, rendering it non-functional. What direct consequence would you expect to observe during DNA replication?
Imagine a scenario where a bacterial cell's ligase enzyme is mutated, rendering it non-functional. What direct consequence would you expect to observe during DNA replication?
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During transcription in bacteria, which enzyme is directly responsible for synthesizing mRNA from a DNA template?
During transcription in bacteria, which enzyme is directly responsible for synthesizing mRNA from a DNA template?
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What would be the most likely immediate effect of a mutation that inactivates primase on DNA replication?
What would be the most likely immediate effect of a mutation that inactivates primase on DNA replication?
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Considering the central dogma, how would blocking transcription in a bacterial cell most directly affect cellular processes?
Considering the central dogma, how would blocking transcription in a bacterial cell most directly affect cellular processes?
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What key enzymatic function is necessary for proofreading during DNA replication to maintain the integrity of the newly synthesized DNA strand?
What key enzymatic function is necessary for proofreading during DNA replication to maintain the integrity of the newly synthesized DNA strand?
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If a bacterial cell's RNA polymerase is mutated such that it can no longer bind to the promoter region, what is the most likely consequence?
If a bacterial cell's RNA polymerase is mutated such that it can no longer bind to the promoter region, what is the most likely consequence?
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Consider a bacterial gene with a mutated leader sequence. Which aspect of gene expression would be most directly affected?
Consider a bacterial gene with a mutated leader sequence. Which aspect of gene expression would be most directly affected?
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A researcher introduces a mutation in the terminator sequence of a bacterial gene. What is the most likely outcome of this mutation?
A researcher introduces a mutation in the terminator sequence of a bacterial gene. What is the most likely outcome of this mutation?
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A bacterial cell has a mutation that impairs the function of rho-dependent termination. What is the most likely consequence of this mutation during transcription?
A bacterial cell has a mutation that impairs the function of rho-dependent termination. What is the most likely consequence of this mutation during transcription?
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In a bacterial operon, a mutation in the operator sequence prevents the repressor protein from binding. What effect will this have on the transcription of the operon's genes?
In a bacterial operon, a mutation in the operator sequence prevents the repressor protein from binding. What effect will this have on the transcription of the operon's genes?
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A bacterium is engineered to express a eukaryotic gene. However, the resulting protein is shorter than expected. What is a likely explanation for this observation?
A bacterium is engineered to express a eukaryotic gene. However, the resulting protein is shorter than expected. What is a likely explanation for this observation?
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What occurs during the elongation phase of bacterial transcription?
What occurs during the elongation phase of bacterial transcription?
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In bacterial gene expression, what would be the direct result of a mutation that disables the Shine-Dalgarno sequence?
In bacterial gene expression, what would be the direct result of a mutation that disables the Shine-Dalgarno sequence?
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In bacterial gene expression, what is a key difference from eukaryotic gene expression regarding transcription and translation?
In bacterial gene expression, what is a key difference from eukaryotic gene expression regarding transcription and translation?
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Considering the semi-conservative nature of DNA replication, what would be the predicted outcome after three generations of replication, starting with one double-stranded DNA molecule?
Considering the semi-conservative nature of DNA replication, what would be the predicted outcome after three generations of replication, starting with one double-stranded DNA molecule?
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What is the significance of the central dogma of molecular biology?
What is the significance of the central dogma of molecular biology?
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What is the role of initiation in bacterial replication, and how might it be affected by mutations?
What is the role of initiation in bacterial replication, and how might it be affected by mutations?
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What is a major difference between the structure of DNA and RNA that contributes to their distinct roles in the central dogma?
What is a major difference between the structure of DNA and RNA that contributes to their distinct roles in the central dogma?
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In the context of the central dogma, how do proteins contribute to the genotype-phenotype relationship?
In the context of the central dogma, how do proteins contribute to the genotype-phenotype relationship?
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What is the role of termination during DNA replication?
What is the role of termination during DNA replication?
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How does the non-template strand relate to the mRNA transcript produced during transcription?
How does the non-template strand relate to the mRNA transcript produced during transcription?
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During transcription, what is role of the template strand of DNA?
During transcription, what is role of the template strand of DNA?
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What is the role of the sigma factor in transcription?
What is the role of the sigma factor in transcription?
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How would a mutation that impairs the function of the termination sequence affect transcription?
How would a mutation that impairs the function of the termination sequence affect transcription?
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Which direction does RNA polymerase move along the DNA template strand during elongation?
Which direction does RNA polymerase move along the DNA template strand during elongation?
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How does the unwinding of DNA during transcription contribute to the process?
How does the unwinding of DNA during transcription contribute to the process?
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What would be the most likely consequence if RNA polymerase lacked the ability to proofread its work?
What would be the most likely consequence if RNA polymerase lacked the ability to proofread its work?
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In what way does the nucleotide pool directly participate during the elongation phase of transcription?
In what way does the nucleotide pool directly participate during the elongation phase of transcription?
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In bacterial transcription termination, what is the immediate fate of the mRNA transcript?
In bacterial transcription termination, what is the immediate fate of the mRNA transcript?
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What is the crucial role of the ribosome during translation?
What is the crucial role of the ribosome during translation?
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Which of the following is a key distinction in the central dogma's application in bacteria compared to eukaryotes?
Which of the following is a key distinction in the central dogma's application in bacteria compared to eukaryotes?
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If a bacterial tRNA molecule has the anticodon 3'-GAC-5', which mRNA codon can it recognize and bind to?
If a bacterial tRNA molecule has the anticodon 3'-GAC-5', which mRNA codon can it recognize and bind to?
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Considering the degeneracy of the genetic code, what is the most likely effect of a single nucleotide change in the third position of a codon?
Considering the degeneracy of the genetic code, what is the most likely effect of a single nucleotide change in the third position of a codon?
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Which component of the ribosome is responsible for catalyzing the formation of peptide bonds during translation?
Which component of the ribosome is responsible for catalyzing the formation of peptide bonds during translation?
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What is the role of the fMet (N-formylmethionine) in bacterial translation?
What is the role of the fMet (N-formylmethionine) in bacterial translation?
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How do bacterial ribosomes identify the correct start codon (AUG) to initiate translation?
How do bacterial ribosomes identify the correct start codon (AUG) to initiate translation?
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A mutation in a bacterial gene results in a tRNA that now recognizes the codon UGU (normally coding for cysteine) and inserts serine instead. What is the most likely consequence of this mutation?
A mutation in a bacterial gene results in a tRNA that now recognizes the codon UGU (normally coding for cysteine) and inserts serine instead. What is the most likely consequence of this mutation?
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In a bacterial cell, a specific mRNA sequence reads 5'-AUG-GGC-UAU-UAA-3'. What sequence of amino acids will be produced from this mRNA during translation?
In a bacterial cell, a specific mRNA sequence reads 5'-AUG-GGC-UAU-UAA-3'. What sequence of amino acids will be produced from this mRNA during translation?
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What is the functional significance of start and stop codons in mRNA during translation?
What is the functional significance of start and stop codons in mRNA during translation?
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Considering the structure of a ribosome, what is the role of the 30S subunit in bacterial translation?
Considering the structure of a ribosome, what is the role of the 30S subunit in bacterial translation?
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A bacterial cell is treated with a drug that inhibits the function of aminoacyl-tRNA synthetases. What direct effect will this have on translation?
A bacterial cell is treated with a drug that inhibits the function of aminoacyl-tRNA synthetases. What direct effect will this have on translation?
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Which of the following is a key difference between the template strand and the non-template strand of DNA in bacterial transcription?
Which of the following is a key difference between the template strand and the non-template strand of DNA in bacterial transcription?
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What is the most likely outcome if a mutation occurs in the gene encoding release factors in bacteria?
What is the most likely outcome if a mutation occurs in the gene encoding release factors in bacteria?
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Flashcards
Central Dogma
Central Dogma
The flow of genetic information: DNA → RNA → Protein.
Replication
Replication
The process of copying DNA to produce identical DNA strands.
Semi-Conservative Replication
Semi-Conservative Replication
Each new DNA molecule consists of one original and one new strand.
Transcription
Transcription
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Translation
Translation
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Initiation
Initiation
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Elongation
Elongation
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Termination
Termination
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Helicase
Helicase
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Replication Fork
Replication Fork
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Leading Strand
Leading Strand
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DNA Polymerase III
DNA Polymerase III
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RNA Primer
RNA Primer
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Eukaryotic vs. Bacterial Transcription
Eukaryotic vs. Bacterial Transcription
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RNA Polymerase
RNA Polymerase
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Template Strand
Template Strand
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Nontemplate Strand
Nontemplate Strand
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Direction of RNA Synthesis
Direction of RNA Synthesis
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Sigma Factor
Sigma Factor
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Transcription Termination Site
Transcription Termination Site
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Early mRNA Transcript
Early mRNA Transcript
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Complementary Base Pairing
Complementary Base Pairing
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Primase
Primase
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Lagging Strand
Lagging Strand
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Bacterial Genes Organization
Bacterial Genes Organization
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Okazaki Fragments
Okazaki Fragments
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Promoter Region
Promoter Region
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Leader Sequence
Leader Sequence
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3’ to 5’ Orientation
3’ to 5’ Orientation
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Ligase
Ligase
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Transcription Steps
Transcription Steps
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Termination Signals
Termination Signals
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Polypeptide Coding
Polypeptide Coding
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Cytoplasmic Transactions
Cytoplasmic Transactions
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Codon
Codon
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Anticodon
Anticodon
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Transfer RNA (tRNA)
Transfer RNA (tRNA)
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Ribosome
Ribosome
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Ribozyme
Ribozyme
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Start Codon
Start Codon
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Stop Codon
Stop Codon
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Genetic Code
Genetic Code
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Elongation in Translation
Elongation in Translation
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Unique Features in Bacteria
Unique Features in Bacteria
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Second Base Position
Second Base Position
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Amino Acids
Amino Acids
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Study Notes
Information Flow in Biology
- The genotype (genetic information) influences the phenotype (observable traits).
- DNA replication duplicates DNA.
- Transcription converts DNA to RNA.
- Translation converts RNA to protein.
- The environment interacts with the genotype to create the phenotype.
Biologically Important Polymers
- DNA, RNA, and protein are important biological polymers.
Central Dogma in Bacteria
- DNA replicates.
- DNA transcribes into RNA.
- RNA translates into protein.
- Each step has initiation and elongation stages.
DNA Discovery
- This section is missing.
Mortality Experience in 2017
- In 2017, 2,813,503 resident deaths were registered in the United States.
- The age-adjusted death rate was 731.9 deaths per 100,000 U.S. standard population.
- Life expectancy at birth was 78.6 years.
- The 15 leading causes of death in 2017 were:
- Diseases of the heart (heart disease)
- Malignant neoplasms (cancer)
- Accidents (unintentional injuries)
- Chronic lower respiratory diseases
- Cerebrovascular diseases (stroke)
- Alzheimer disease
- Diabetes mellitus (diabetes)
- Influenza and pneumonia
- Nephritis, nephrotic syndrome, and nephrosis (kidney disease)
- Intentional self-harm (suicide)
- Chronic liver disease and cirrhosis
- Septicemia
- Essential hypertension and hypertensive renal disease (hypertension)
- Parkinson disease
- Pneumonitis due to solids and liquids
Pneumococcal Pneumonia
- Sputum smear shows bacteria related to the pneumonia condition.
Studies on the Chemical Nature of the Substance
- The evidence supports the idea that a nucleic acid of the deoxyribose type is the fundamental unit of the transforming principle of Pneumococcus Type III.
DNA Structure
- DNA is a double helix.
- The backbone consists of sugars and phosphates.
- Base pairs (A-T, G-C) connect the two strands through hydrogen bonds.
Review Structure of DNA
- DNA has a double helix shape.
- The sides of the helix are made of alternating sugar and phosphate molecules.
- The rungs of the helix are made of base pairs (adenine with thymine and guanine with cytosine.)
- DNA has a 5' end and a 3' end.
- DNA has major and minor grooves.
Replication is a Semi-Conservative Process
- DNA replication uses a semi-conservative process.
- The two strands of the double helix are separated.
- Each separated strand serves as a template to build a new strand.
- The result is two new DNA molecules, each with one original strand and one new strand.
DNA Replication Stages
- Initiation occurs at the origin of replication.
- Elongation involves replication forks moving in two directions.
- Termination happens when the replication forks meet.
Major Steps & Enzymes in DNA Elongation
- The chromosome is unwound to form a replication fork.
- The leading strand is synthesized continuously toward the replication fork.
- The lagging strand is synthesized discontinuously in fragments (Okazaki fragments), away from the fork.
- Enzymes like Primase, DNA Polymerase, and Ligase are involved in elongation.
Transcription Initiation, Elongation & Termination
- Initiation involves RNA polymerase binding to a promoter region.
- Elongation involves RNA polymerase moving along the DNA template.
- Termination involves RNA polymerase reaching a termination sequence.
Transcription Initiation Details
- RNA polymerase binds to a promoter region where transcription starts.
- The -10 and -35 sequences are key in initiation.
- Sigma (σ) factor helps in accurate binding to the promoter region.
- An open complex is formed, DNA unwinds, and transcription begins.
- Sigma (σ) factor detaches after transcription begins.
Transcription Elongation
- RNA polymerase continues moving, synthesizing RNA from the template strand.
- mRNA is synthesized in the 5' to 3' direction.
Transcription Termination
- RNA polymerase reaches a termination sequence and stops.
- Stem-loop structures in mRNA can play a role in termination.
- Other mechanisms of termination exist too.
Translation
- The genetic code translates mRNA to amino acids.
- tRNA molecules carry specific amino acids to the ribosome.
- Ribosomes assemble proteins based on the mRNA codons.
Translation: Initiation
- N-formylmethionine-tRNA is often the first tRNA to bind.
- Ribosome subunits and initiation factors are involved in complex binding processes.
Translation: Elongation
- tRNA molecules bring amino acids to the ribosome.
- Peptide bonds are formed to connect amino acids.
- The ribosome moves along the mRNA, adding amino acids to the growing polypeptide chain.
Translation: Termination
- Stop codons on the mRNA signal the end of translation.
- Release factors bind to the stop codon to release the polypeptide.
Ribosome: Location & Function
- Ribosomes are the sites of protein synthesis.
- Ribosomes are made of RNA and proteins.
- 30S and 50S subunits combine into the 70S ribosome in bacteria.
- Ribosomes are ribozymes; they catalyze peptide bond formation.
Unique Organization of Bacterial Genes
- Polycistronic mRNAs typically encode more than one protein.
- Monocistronic mRNAs encode a single protein.
- Bacterial mRNA does not have post-transcriptional processing.
Transfer RNA (tRNA) Structure
- tRNA molecules are essential for translation.
- tRNA has specific acceptor stems and an anticodon loop.
- The anticodon loop pairs with mRNA codons.
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Description
Test your knowledge on DNA replication with this quiz. Explore important concepts like the roles of primase, DNA polymerase, and ligase during the process. Understand the complexities of lagging strand synthesis and the effects of mutations on DNA replication.