Lecture 8 - DNA Replication and Compaction Mechanics
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Questions and Answers

What was the purpose of spinning the solution in a CsCl density gradient?

  • To maintain the temperature during centrifugation
  • To enhance UV light absorption in DNA
  • To separate proteins from DNA
  • To separate DNA based on its density (correct)
  • What type of DNA was confirmed to be produced through semi-conservative replication?

  • Only 14N-DNA
  • A mixture of original and newly synthesized strands (correct)
  • Only hybrid DNA strains
  • Only 15N-DNA
  • Which factors are required for the in vitro replication of DNA as discovered by Arthur Kornberg?

  • An isolated enzyme and a template DNA
  • A template DNA, dNTPs, Mg2+, ATP, and a primer (correct)
  • Only a primer and energy source
  • Only a template DNA and deoxynucleotide triphosphates
  • What is the primary direction of new DNA strand synthesis mediated by polymerases?

    <p>5' to 3'</p> Signup and view all the answers

    Which enzyme is essential for DNA replication in E. coli?

    <p>Pol III</p> Signup and view all the answers

    What additional activities does Pol I possess apart from 5' to 3' DNA polymerizing?

    <p>3' to 5' exonuclease and editing functions</p> Signup and view all the answers

    What was the conclusion regarding the forms of DNA visible after one generation in the experiment?

    <p>All DNA was hybrid</p> Signup and view all the answers

    Which of the following was NOT a condition needed for DNA replication as identified by Kornberg?

    <p>An anti-sense strand of DNA</p> Signup and view all the answers

    Who discovered Pol III, the enzyme essential for DNA replication in E. coli?

    <p>Thomas Kornberg</p> Signup and view all the answers

    What mechanism describes how DNA replication results in each daughter DNA molecule containing one parental strand?

    <p>Semi-conservative model</p> Signup and view all the answers

    Which process helps to compact E. coli DNA into its small cell size?

    <p>Supercoiling</p> Signup and view all the answers

    What is the primary role of nucleoid-associated proteins in E. coli?

    <p>Helping to compact DNA</p> Signup and view all the answers

    What type of base pairing occurs between adenine and thymine during DNA structure formation?

    <p>Two hydrogen bonds</p> Signup and view all the answers

    What is the outcome of Meselson and Stahl's experiments on DNA replication?

    <p>Support for the semi-conservative model</p> Signup and view all the answers

    How long is the total DNA length in a human somatic cell?

    <p>~2.2 m</p> Signup and view all the answers

    Which of the following statements about DNA replication error rates is true?

    <p>Error rates are low due to proofreading mechanisms.</p> Signup and view all the answers

    What experimental technique did Meselson and Stahl use to differentiate between DNA replication models?

    <p>CsCl equilibrium density gradient centrifugation</p> Signup and view all the answers

    What is the approximate size of the human genome in base pairs?

    <p>6.4 Gbp</p> Signup and view all the answers

    Which model of DNA replication suggests that both parental strands remain intact?

    <p>Conservative model</p> Signup and view all the answers

    Which process helps compact DNA in E. coli?

    <p>Supercoiling</p> Signup and view all the answers

    What model of DNA replication did Watson and Crick propose?

    <p>Semi-conservative model</p> Signup and view all the answers

    What technique did Meselson and Stahl use to test their DNA replication model?

    <p>Caesium chloride equilibrium density gradient centrifugation</p> Signup and view all the answers

    What is the primary function of DNA polymerases?

    Signup and view all the answers

    What is required for DNA polymerase to synthesize new DNA?

    <p>Deoxynucleotide triphosphates and a primer</p> Signup and view all the answers

    Which enzyme is essential for DNA replication in E. coli?

    <p>Pol III</p> Signup and view all the answers

    What characteristic of DNA replication was demonstrated by the Watson-Crick model?

    <p>DNA replication is semi-conservative, with each new strand containing one original and one new strand.</p> Signup and view all the answers

    Which model of DNA replication was confirmed by Meselson and Stahl’s experiment?

    <p>Semi-conservative</p> Signup and view all the answers

    Study Notes

    DNA Replication

    • DNA is organised in a circular, double-stranded structure
    • Bacterial DNA (e.g., Escherichia coli) has a size of 4639 kb
    • Base pairs are spaced 0.34 nm apart
    • Total DNA length in E. coli is 1.6 mm
    • Bacterial cell size is 1-2 μm
    • DNA compaction mechanisms include supercoiling and nucleoid-associated proteins
    • Supercoiling reduces size by twisting the DNA
    • Nucleoid-associated proteins help compact DNA within the bacterial cell
    • Human DNA has a genome size of 6.4 Gbp and a total length of ~2.2 m per cell.

    Compaction Mechanics

    • Nucleus size is approximately 6 μm in diameter.
    • DNA compaction occurs through nucleosomes and chromatin fibres.
    • Eukaryotic DNA is packed more densely than E. coli DNA.
    • DNA length in humans is sufficient to stretch to the Sun and back approximately 730 times.

    DNA Replication Mechanisms

    • DNA must decompact and be copied during cell division
    • Error rate during replication is very low
    • Watson-Crick model: DNA strands can act as templates to build complementary strands, resulting in identical daughter molecules
    • Watson-Crick model proposes that base pairing (A-T, G-C) holds the strands together.
    • Each strand is complementary to the other, therefore, each can act as a template for DNA replication.

    Testing Models of DNA Replication

    • Meselson and Stahl (1958) used caesium chloride (CsCl) equilibrium density gradient centrifugation to test DNA replication models
    • The technique separates molecules based on density.
    • Using isotopes, they tracked DNA replication to determine whether replication was conservative, semi-conservative or dispersive.
    • The results confirmed semi-conservative replication, meaning each new DNA molecule consisted of one original strand and one newly synthesized strand.

    DNA Polymerases

    • DNA polymerase enzymes are responsible for DNA replication
    • DNA polymerase I can synthesize DNA and has editing and error correction functions
    • It possesses 5' to 3' polymerase, 3' to 5' exonuclease, and 5' to 3' exonuclease activities.
    • DNA polymerase III is essential for DNA replication in E. coli.
    • New DNA strands are extended in a 5' to 3' direction by DNA polymerase.
    • DNA polymerase has two active sites: one for polymerization and one for editing.
    • The editing site is the 3' to 5' exonuclease active site.

    DNA Replication Polarity

    • The DNA strands run anti-parallel (5' to 3' and 3' to 5')
    • DNA replication is semi-continuous (one leading and one lagging strand.)
    • New DNA is made in the 5’ → 3’ direction
    • Priming is required for replication, with the primers extended in 5’ → 3’ direction.
    • Lagging strand requires new priming and extension because DNA synthesis occurs in the opposite direction.

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    Lecture 8 - DNA Replication PDF

    Description

    This quiz covers the fundamental concepts of DNA replication, including the structure and compaction mechanisms in both bacterial and eukaryotic cells. Explore the differences in DNA organization, size, and replication processes. Challenge your understanding of key terms and models in genetics.

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