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Questions and Answers
Which of the following correctly describes the relationship between the equilibrium constant (Keq) and the direction of an enzymatic reaction?
Which of the following correctly describes the relationship between the equilibrium constant (Keq) and the direction of an enzymatic reaction?
What is the difference between competitive and noncompetitive inhibitors?
What is the difference between competitive and noncompetitive inhibitors?
Which of the following correctly describes the relationship between KM and the affinity of an enzyme for its substrate?
Which of the following correctly describes the relationship between KM and the affinity of an enzyme for its substrate?
Which of the following is an example of an Hsp70 chaperone?
Which of the following is an example of an Hsp70 chaperone?
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Which of the following correctly describes the difference between PrPc and PrPsc?
Which of the following correctly describes the difference between PrPc and PrPsc?
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Which level of protein structure is primarily determined by hydrogen bonding between the backbone atoms of the polypeptide chain?
Which level of protein structure is primarily determined by hydrogen bonding between the backbone atoms of the polypeptide chain?
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Which of the following describes the process of a thermodynamically unfavorable reaction occurring in a cell?
Which of the following describes the process of a thermodynamically unfavorable reaction occurring in a cell?
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Which of the following correctly describes the structure of a carboxyl group below its pK?
Which of the following correctly describes the structure of a carboxyl group below its pK?
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What is the main source of trans fats in the diet?
What is the main source of trans fats in the diet?
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Which of the following statements about the structure of α-helices and β-pleated sheets is TRUE?
Which of the following statements about the structure of α-helices and β-pleated sheets is TRUE?
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What is the primary function of the Golgi apparatus in a eukaryotic cell?
What is the primary function of the Golgi apparatus in a eukaryotic cell?
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Which of the following covalent bonds is considered polar due to the difference in electronegativity between the atoms involved?
Which of the following covalent bonds is considered polar due to the difference in electronegativity between the atoms involved?
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Which of the following functional groups is NOT capable of forming hydrogen bonds?
Which of the following functional groups is NOT capable of forming hydrogen bonds?
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What is the key structural difference that distinguishes starch from cellulose, both being polymers of glucose?
What is the key structural difference that distinguishes starch from cellulose, both being polymers of glucose?
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Which of the following statements accurately describes the properties of life that are also shared by cells?
Which of the following statements accurately describes the properties of life that are also shared by cells?
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The endosymbiotic theory states that:
The endosymbiotic theory states that:
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In the context of cell theory, what is the primary function of the nucleus?
In the context of cell theory, what is the primary function of the nucleus?
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Which of the following is NOT considered a basic property of cells?
Which of the following is NOT considered a basic property of cells?
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Which of the following is NOT common to both eukaryotes and prokaryotes?
Which of the following is NOT common to both eukaryotes and prokaryotes?
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Different laboratory methods allow scientists to isolate specific cellular organelles, so that they can study some cellular processes in more detail. Which organelle would you try to isolate if you wanted to study the enzymes involved in lipid synthesis?
Different laboratory methods allow scientists to isolate specific cellular organelles, so that they can study some cellular processes in more detail. Which organelle would you try to isolate if you wanted to study the enzymes involved in lipid synthesis?
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According to the theory of endosymbiosis promoted by ______, our earliest prokaryotic ancestor was an ______, who ingested an ______, the precursor of modern day mitochondria. Ingestion of a second endosymbiont, a ______, later evolved into chloroplasts.
According to the theory of endosymbiosis promoted by ______, our earliest prokaryotic ancestor was an ______, who ingested an ______, the precursor of modern day mitochondria. Ingestion of a second endosymbiont, a ______, later evolved into chloroplasts.
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Which of the following is NOT a property of covalent and non-covalent bonds?
Which of the following is NOT a property of covalent and non-covalent bonds?
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Based on the following table of electronegativity, which of the following represents the order of polarity, most to least?
Based on the following table of electronegativity, which of the following represents the order of polarity, most to least?
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In a covalent bond formed between Nitrogen and a less electronegative atom, the N atom would have a ______ while the less electronegative atom would have a ______ charge.
In a covalent bond formed between Nitrogen and a less electronegative atom, the N atom would have a ______ while the less electronegative atom would have a ______ charge.
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Particular groupings of atoms that often behave as a unit and give organic molecules their physical properties, chemical reactivity and solubility in aqueous solutions are known as:
Particular groupings of atoms that often behave as a unit and give organic molecules their physical properties, chemical reactivity and solubility in aqueous solutions are known as:
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Which of the following characteristics below (from 1 to 7) are typical of the polysaccharide cellulose?
Which of the following characteristics below (from 1 to 7) are typical of the polysaccharide cellulose?
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Compounds rich in [blank] tend to be liquid at room temperature. These compounds can be altered so they are solid at room temperature by [blank].
Compounds rich in [blank] tend to be liquid at room temperature. These compounds can be altered so they are solid at room temperature by [blank].
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The following structures represent ______, which are maintained ______ at room temperature, due to the ______ of double bonds.
The following structures represent ______, which are maintained ______ at room temperature, due to the ______ of double bonds.
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A patient with hyperlipidemia has been counseled to reduce the saturated fats in his diet, so he has replaced butter with a butter substitute that he knows is made from a polyunsaturated oil. The manufacturer of this butter substitute has partially hydrogenated this product. Which one of the following is the best description of why this product was partially hydrogenated?
A patient with hyperlipidemia has been counseled to reduce the saturated fats in his diet, so he has replaced butter with a butter substitute that he knows is made from a polyunsaturated oil. The manufacturer of this butter substitute has partially hydrogenated this product. Which one of the following is the best description of why this product was partially hydrogenated?
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As a scientist you find an unknown sample and run some tests to identify this unknown sample. Molecular analysis found glycerol, fatty acids, phosphate and choline. Given this, which conclusion is most probable?
As a scientist you find an unknown sample and run some tests to identify this unknown sample. Molecular analysis found glycerol, fatty acids, phosphate and choline. Given this, which conclusion is most probable?
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You treat a partially purified preparation of protein with mercaptoethanol, a reagent that can break bonds formed between sulfur atoms. Which level of protein structure is likely to be affected?
You treat a partially purified preparation of protein with mercaptoethanol, a reagent that can break bonds formed between sulfur atoms. Which level of protein structure is likely to be affected?
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Amino acids 1 to 4 are all part of the same solution at a particular pH. If kept at the same pH, hydrogen bonds, could be formed between the R groups of: (See figures in document)
Amino acids 1 to 4 are all part of the same solution at a particular pH. If kept at the same pH, hydrogen bonds, could be formed between the R groups of: (See figures in document)
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Amino acids 1 to 4 are all part of the same solution at a particular pH. If kept at the same pH, ionic bonds could be formed between the R groups of: (See figures in document)
Amino acids 1 to 4 are all part of the same solution at a particular pH. If kept at the same pH, ionic bonds could be formed between the R groups of: (See figures in document)
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How many amino acids are in this peptide?: (See figure in document)
How many amino acids are in this peptide?: (See figure in document)
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What is the role of misfolded proteins in Creutzfeld-Jakob Disease?
What is the role of misfolded proteins in Creutzfeld-Jakob Disease?
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Free energy is ______. A reaction will be spontaneous when ______
Free energy is ______. A reaction will be spontaneous when ______
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Conversion of A → B is an endergonic reaction. Which of the following reactions could be coupled with A→B so that both A→B and C D can occur?
Conversion of A → B is an endergonic reaction. Which of the following reactions could be coupled with A→B so that both A→B and C D can occur?
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The continual flow of oxygen and other materials into and out of cells allows cellular metabolism to exist in a steady state because
The continual flow of oxygen and other materials into and out of cells allows cellular metabolism to exist in a steady state because
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Enzymes speed up reactions by lowering the ______. This can be accomplished by forming an enzyme-substrate complex, where the R chains of the amino acids in the enzyme's ______ and the substrate are bound together by ______.
Enzymes speed up reactions by lowering the ______. This can be accomplished by forming an enzyme-substrate complex, where the R chains of the amino acids in the enzyme's ______ and the substrate are bound together by ______.
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Dissolving a sugar cube in water and breaking down complex glycogen molecules into smaller molecules are examples of decrease in entropy in a system.
Dissolving a sugar cube in water and breaking down complex glycogen molecules into smaller molecules are examples of decrease in entropy in a system.
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The amino acids glutamine and glutamic acid are shown below. They differ only in the structure of their side chains (circled). At pH 7, glutamic acid can participate in molecular interactions that are not possible for glutamine. What types of interactions are these? (See figure in the document)
The amino acids glutamine and glutamic acid are shown below. They differ only in the structure of their side chains (circled). At pH 7, glutamic acid can participate in molecular interactions that are not possible for glutamine. What types of interactions are these? (See figure in the document)
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Which of the following amino acids has side chains with the greatest potential to form a) hydrogen-bonds b) ionic-bonds and c) hydrophobic interactions? (assume you don't change the pH) (See figure in the document)
Which of the following amino acids has side chains with the greatest potential to form a) hydrogen-bonds b) ionic-bonds and c) hydrophobic interactions? (assume you don't change the pH) (See figure in the document)
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You mix reagents (A, B, C, D) so that each is present at an initial concentration of
You mix reagents (A, B, C, D) so that each is present at an initial concentration of
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What type of bond is this and what structure do long chains of this make up? (See figure in the document)
What type of bond is this and what structure do long chains of this make up? (See figure in the document)
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A fatty acid consists of three hydrocarbon chains linked to a glycerol backbone.
A fatty acid consists of three hydrocarbon chains linked to a glycerol backbone.
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Is the following statement correct? “Amino acids used in making a polypeptide have an amino group and a carboxyl group, and these groups can be present on any carbon atoms”
Is the following statement correct? “Amino acids used in making a polypeptide have an amino group and a carboxyl group, and these groups can be present on any carbon atoms”
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An enzyme in the liver that removes glucose from blood has a high K™; another that does the same thing in brain tissue has a small K™. Which of the following options would BEST describe how this information would relate to glucose uptake in an organism?
An enzyme in the liver that removes glucose from blood has a high K™; another that does the same thing in brain tissue has a small K™. Which of the following options would BEST describe how this information would relate to glucose uptake in an organism?
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Flashcards
Cell Theory
Cell Theory
Three fundamental principles about cells: all living things are made of cells, cells are the basic unit of life, and all cells arise from pre-existing cells.
Lynn Margulis
Lynn Margulis
A prominent biologist known for her theory on the symbiotic origin of eukaryotic cells.
Electronegativity
Electronegativity
A measure of an atom's ability to attract and hold electrons, varying across the periodic table.
Polar Covalent Bonds
Polar Covalent Bonds
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Acids and Bases
Acids and Bases
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Types of Noncovalent Bonds
Types of Noncovalent Bonds
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Cell Structures
Cell Structures
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Functional Groups
Functional Groups
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Saturated Fatty Acid
Saturated Fatty Acid
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Unsaturated Fatty Acid
Unsaturated Fatty Acid
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Trans Fats
Trans Fats
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pKa
pKa
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Endergonic Reaction
Endergonic Reaction
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Exergonic Reaction
Exergonic Reaction
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Equilibrium Constant (Keq)
Equilibrium Constant (Keq)
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Enzyme
Enzyme
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Native Protein Structure
Native Protein Structure
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Chaperone Proteins
Chaperone Proteins
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Eukaryotes vs Prokaryotes
Eukaryotes vs Prokaryotes
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Lipid Synthesis Organelle
Lipid Synthesis Organelle
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Endosymbiosis Theory
Endosymbiosis Theory
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Covalent Bonds
Covalent Bonds
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Non-Covalent Bonds
Non-Covalent Bonds
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Polarity Order
Polarity Order
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Charge in Covalent Bonds
Charge in Covalent Bonds
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Cellulose Properties
Cellulose Properties
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Unsaturated Fats
Unsaturated Fats
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Hydrogenation Effect
Hydrogenation Effect
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Protein Structure
Protein Structure
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Misfolded Proteins Role
Misfolded Proteins Role
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Free Energy
Free Energy
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Endergonic and Coupled Reactions
Endergonic and Coupled Reactions
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Cell Metabolism Steady State
Cell Metabolism Steady State
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Enzyme Function
Enzyme Function
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Entropy Change
Entropy Change
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Amino Acid Interactions
Amino Acid Interactions
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Peptide Length
Peptide Length
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Ionic Bonds in Amino Acids
Ionic Bonds in Amino Acids
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Sugar and Glycerol
Sugar and Glycerol
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Amino Acid Structure
Amino Acid Structure
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KM Values
KM Values
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Glycogen Breakdown
Glycogen Breakdown
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Study Notes
Cell and Molecular Biology Introduction
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Prokaryotic, Plant, and Animal Cell Diagrams: Students should draw and label diagrams of prokaryotic, plant, and animal cells, emphasizing the functions of components like cell membrane, cell wall, nucleus, genetic material, ribosomes, rough ER, smooth ER, Golgi, mitochondria, chloroplast, lysosome, peroxisome, vacuole, microtubules, actin filaments, and intermediate filaments.
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Cell Theory Tenets: Students must list and explain the three tenets of Cell Theory.
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Five Cell Properties: Detail five fundamental properties of cells, distinguishing them from the fundamental properties of life.
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Lynn Margulis's Contribution: Describe Lynn Margulis and her key contribution to cellular biology, focusing on her symbiotic theory, and how it explains the origin of mitochondria and chloroplasts.
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Mitochondrial and Chloroplast Origin: Outline the evidence supporting the endosymbiotic theory, particularly for the origins of mitochondria and chloroplasts in modern eukaryotes. Include examples of evidence such as double membranes and their own DNA. Describe prokaryotic ancestor ingesting aerobic prokaryote to form mitochondrial ancestor and another ingestion event forming chloroplast ancestor from cyanobacteria.
Basic Chemistry
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Electronegativity Trends: Define electronegativity, explaining how it changes across the periodic table. Electronegativity is the tendency of an atom to attract shared electrons in a covalent bond.
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Polar vs. Nonpolar Covalent Bonds: Determine whether covalent bonds (HCl, CO2, CH4, H2O, H2S, NH3) are polar or nonpolar based on electronegativity differences.
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Noncovalent Bond Types: Describe the properties and characteristics of distinct types of noncovalent bonds (hydrogen bonds, ionic bonds, van der Waals interactions).
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Functional Groups and Hydrogen Bonding: Draw and identify functional groups on a table, specifying which can form hydrogen bonds. Note which bond types (hydrogen, ionic, van der Waals) are important to protein folding and function.
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Acids and Bases: Define acids and bases, and explain the influence of acids and bases on pH through impacting H+ and OH- concentrations in aqueous solutions. Give examples of each in water.
Carbohydrates, Lipids, and Proteins
- Polymer Structures: Draw and label glycogen, starch, and cellulose molecules, each with at least six glucose monomers. Identify the bonds responsible for their structure, noting examples of where each polymer is found.
- Lipid Structures: Draw the general structures of fatty acids, fats, and phospholipids. Identify and label functional groups in these structures using the table.
- Saturated vs. Unsaturated Fatty Acids: Define saturated and unsaturated fatty acids, highlighting structural differences and melting temperatures. Define trans fats and their primary sources (note industrial hydrogenation process).
- pK Values and Functional Groups: Define pK (pKa) and illustrate the structures of a carboxyl group and an amino group above and below their respective pKs. Note how pK values relate to pH and ionization states of these groups in proteins.
Thermodynamics and Free Energy
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Thermodynamic Definitions: Define key terms like internal energy (E), exothermic, endothermic, spontaneous, thermodynamically favorable, entropy, free energy (ΔG), exergonic, and endergonic.
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Laws of Thermodynamics: Describe the two laws of thermodynamics and the concept of "events in the universe tending to go downhill" with an example.
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Endergonic Reactions in Cells: Explain how endergonic reactions occur in cells despite being thermodynamically unfavorable through coupling with exergonic reactions (a very important point).
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Equilibrium Constant (Keq): Define equilibrium constant (Keq) and explain its relationship to the direction of an enzymatic reaction. Note how Keq values relate to the relative concentrations of products and reactants at equilibrium.
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Equilibrium vs. Steady State Metabolism: Compare and contrast equilibrium and steady-state metabolism, analyzing how open systems are maintained far from equilibrium.
Enzymes I
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Enzyme Definitions: Define enzyme, coenzyme, cofactor, turnover number, activation energy, activation energy barrier, transition state, and active site.
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Enzymatic Reaction Diagram: Label and explain a diagram depicting the free energy changes in a reaction with and without an enzyme, emphasizing transition state, activation energy, and substrates/products.
Higher Order of Protein Structure
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pK Values and Functional Groups: Define pK (pKa) and illustrate the structures of a carboxyl group and an amino group above and below their respective pKs.
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Amino Acid Classification: Classify amino acids as polar charged, polar uncharged, or nonpolar based on R-group properties (refer to Figure 2.28).
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Protein Structure Levels: List and describe the four levels of protein structure and the types of bonds responsible for each.
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Secondary Structure (α-helix and β-sheet): Compare and contrast α-helices and β-pleated sheets, illustrating the hydrogen bonding patterns. Add that secondary structures are stabilized by hydrogen bonds.
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Tertiary and Quaternary Structure Bonds: Identify and illustrate how side chains of different amino acids form noncovalent bonds to create tertiary and quaternary structures (refer to Figure 2.38). Include details about ionic interactions, hydrogen bonds, hydrophobic interactions, and disulfide bonds.
Protein Conformation and Chaperones
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Protein Folding Definitions: Define protein unfolding, protein folding, and native structure.
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Chaperone Function: Describe the purpose and importance of chaperones, explaining how they bind to nascent proteins (refer to Figure 2.48). Explain that chaperones assist in proper protein folding and prevent aggregation.
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PrP C and PrP Sc Comparison: Compare and contrast PrP C and PrP Sc structures and physical properties, and describe prion "infection" mechanisms in Creutzfeldt-Jakob Disease (CJD). Note the misfolding of a normal protein (PrP C) into a pathogenic form (PrP Sc).
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CJD vs. Alzheimer's Disease (AD): Compare and contrast key features of CJD and Alzheimer's disease (AD). Mention accumulation of misfolded proteins as a commonality.
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Hsp70 and Hsp60: Define Hsp70 and Hsp60, providing examples for each, and illustrating their different modes of action. Explain their role in preventing protein misfolding and aggregation. Describe examples.
Enzyme Kinetics (Additional Points - not explicitly covered in the reading assignments, but potentially helpful)
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Michaelis-Menten Kinetics: Calculate Vmax and KM using the Michaelis-Menten model (hyperbole) and the Lineweaver-Burk model.
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Enzyme Inhibitors: Compare and contrast competitive and noncompetitive inhibitors, describing effects on KM and Vmax. Explain how inhibitors can affect enzyme function and activity.
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Antibiotic Mechanisms: Describe mechanisms of action of three common types of antibiotics targeting bacterial cell walls, protein synthesis, and specific bacterial enzymes. (More specific detail will depend on the exact antibiotics the text covers.)
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Description
This quiz covers fundamental concepts in cell and molecular biology. Students will explore diagrams of prokaryotic, plant, and animal cells, as well as the tenets of Cell Theory and significant contributions by scientists like Lynn Margulis. Additionally, it examines the evidence supporting the endosymbiotic theory, focusing on the origins of mitochondria and chloroplasts.