Bistability in Glycolysis Pathway

Choose a study mode

Play Quiz
Study Flashcards
Spaced Repetition
Chat to Lesson

Podcast

Play an AI-generated podcast conversation about this lesson

Questions and Answers

Which of the following statements about the regulation of glycolysis is TRUE?

  • The glycolysis flux is not regulated by the presence of contrasting allosteric regulations.
  • Glycolysis is only regulated by the expression of specific isoforms of its enzymes.
  • Different tissues express the same combination of glycolytic isoforms, leading to uniform glycolysis activity.
  • Signaling pathways can change the kinetic behavior of glycolytic enzymes, affecting the glycolysis flux. (correct)
  • The glycolysis flux is easily switched between high and low flux states under physiological glucose concentrations.
  • There are no additional layers of regulation that affect the glycolysis flux, other than the expression of specific isoforms of its enzymes.

The presence of both regulatory Loop 1 and Loop 2 in the glycolysis pathway ensures a low glycolytic flux state under physiological glucose concentrations.

False (B)

What is the function of the ordinary differential equation (ODE) model described?

  • To represent glucose metabolism processes (correct)
  • To wash cells with PBS
  • To create a steady state model
  • To calculate enzyme kinetic parameters

What was the purpose of maintaining the flasks for an additional 12 hours?

<p>To allow cells to reach a specific flux state (B)</p> Signup and view all the answers

What is included in the ODE model to facilitate the analysis of glucose metabolism?

<p>Mass balances for reaction intermediates (A)</p> Signup and view all the answers

How were the supernatants assessed after the collection of samples?

<p>With the Infinity Glucose reagent and YSI 2700 SELECT (B)</p> Signup and view all the answers

What is observed when the [NAD]/[NADH] ratios are very low?

<p>Glycolytic flux exhibits multiple steady states. (D)</p> Signup and view all the answers

What was the concentration of cells inoculated into the wells for the experiment?

<p>26 million cells/mL (D)</p> Signup and view all the answers

What effect do Loop 1 and Loop 2 have on glycolytic flux states?

<p>They can create both high and low flux states depending on conditions. (B)</p> Signup and view all the answers

What type of model derived from the ODE model helps evaluate steady states?

<p>Algebraic model (C)</p> Signup and view all the answers

When the concentration of lactate is varied, what is the effect on the steady state flux profile?

<p>It has no effect on the steady state flux profile. (A)</p> Signup and view all the answers

Why were the levels of each enzyme included in the ODE model?

<p>To calculate specific rates of metabolic processes (C)</p> Signup and view all the answers

How does varying alanine concentrations affect the flux state?

<p>It can shift the flux state from low to high under certain conditions. (B)</p> Signup and view all the answers

What analysis method was used to calculate specific rates from the measurement data?

<p>Linear regression (C)</p> Signup and view all the answers

At what glucose concentration does the flux switch to a high state when starting from a low state?

<p>5 mM (C)</p> Signup and view all the answers

What happens to the multiplicity of steady states when the physiological range of glucose concentration is present?

<p>Three stable and two unstable steady states can exist. (A)</p> Signup and view all the answers

What is the maximum flux observed under the influence of both Loop 1 and Loop 2?

<p>It is the same as Loop 1 alone. (A)</p> Signup and view all the answers

What effect does a decrease in glucose concentration have on a high flux state?

<p>It can potentially lead to a low flux state. (B)</p> Signup and view all the answers

What type of kinetics did the steady state flux of the system follow?

<p>Michaelis-Menten type kinetics (B)</p> Signup and view all the answers

What was the range of K/P ratios used in the simulations?

<p>0.5–50 (A)</p> Signup and view all the answers

What analysis technique was used to assess the stability of the steady state solutions?

<p>Eigenvalue analysis (C)</p> Signup and view all the answers

How were the initial guesses for the numerical solver generated?

<p>Using pseudorandom values from the standard uniform distribution (C)</p> Signup and view all the answers

Which PFK isozyme was used exclusively in the simulations?

<p>PFKP (C)</p> Signup and view all the answers

What characteristic behavior was observed regarding steady state flux in one set of simulations?

<p>Uniqueness of solutions was prevalent (D)</p> Signup and view all the answers

What type of data was presented in Figure S7?

<p>Experimental data of glycolysis rate at varying glucose concentrations (D)</p> Signup and view all the answers

What did the steady state analysis reveal about states in the range of K/P ratios from 5 to 100?

<p>No multiplicity of states was observed (A)</p> Signup and view all the answers

What role does lactate play in the regulation of glycolytic enzymes?

<p>It downregulates hexokinase and phosphofructokinase. (A)</p> Signup and view all the answers

Which compound specifically activates phosphofructokinase according to the studies?

<p>Fructose 2,6-bisphosphate (D)</p> Signup and view all the answers

What effect does phosphoenolpyruvate have on ascites tumor phosphofructokinase?

<p>It inhibits the enzyme. (C)</p> Signup and view all the answers

What is the primary function of phosphofructokinase-2/fructose-2,6-bisphosphatase in cancer metabolism?

<p>To regulate levels of fructose-2,6-bisphosphate (A)</p> Signup and view all the answers

Which molecule is known to inhibit the kinase activity of human brain 6-phosphofructo-2-kinase?

<p>Phosphoenolpyruvate (A)</p> Signup and view all the answers

Which of these is a focus of the model concerning 2,3-bisphosphoglycerate metabolism?

<p>Parameter refinement based on kinetic equations. (C)</p> Signup and view all the answers

What type of regulatory mechanism is associated with the enzymatic control of glycolysis?

<p>Allosteric regulation (B)</p> Signup and view all the answers

What is one function of the TIGAR protein in cellular metabolism?

<p>Acts as a regulator of glycolysis and apoptosis. (C)</p> Signup and view all the answers

Which cellular location is primarily associated with the function of mammalian hexokinase isozymes?

<p>Cytoplasm (B)</p> Signup and view all the answers

Which variable is associated with the regulation of 6-phosphofructo-2-kinase activity?

<p>Cellular concentrations of enzymes and substrates (D)</p> Signup and view all the answers

What impact does the K/P ratio of PFKFB have on glycolytic flux?

<p>It influences the enzyme's response to metabolites (D)</p> Signup and view all the answers

How does fructose diphosphate affect phosphofructokinase from skeletal muscle?

<p>It inhibits its activity. (C)</p> Signup and view all the answers

What is a significant impact of the small-molecule inhibition of 6-phosphofructo-2-kinase on cellular processes?

<p>It suppresses glycolytic flux and tumor growth. (B)</p> Signup and view all the answers

Which of the following is a characteristic of the Warburg effect?

<p>Increased aerobic glycolysis (D)</p> Signup and view all the answers

What is the main function of fructose-2,6-bisphosphate in glucose metabolism?

<p>To activate glycolysis (B)</p> Signup and view all the answers

What role does the M2 splice isoform of pyruvate kinase play in cancer?

<p>It promotes the Warburg effect and tumor growth. (A)</p> Signup and view all the answers

Which statement correctly describes the role of phosphofructokinase in glycolysis?

<p>It is inhibited by high levels of ATP (B), It catalyzes the conversion of fructose-6-phosphate to fructose-1,6-bisphosphate (C)</p> Signup and view all the answers

Which process is tyrosine phosphorylation associated with in relation to PKM2?

<p>It inhibits PKM2 to promote the Warburg effect. (A)</p> Signup and view all the answers

What is one function of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase in cancer cells?

<p>It regulates glycolytic flux in tumor cells. (A)</p> Signup and view all the answers

What is the mechanism of action for Akt/PKB in early apoptotic events?

<p>It inhibits early apoptotic events via glycolytic pathways. (B)</p> Signup and view all the answers

What does the positive-feedback-based bistable 'memory module' govern in cellular biology?

<p>A cell fate decision. (C)</p> Signup and view all the answers

What is the impact of glucagon on pyruvate kinase in hepatocytes?

<p>It stimulates phosphorylation of pyruvate kinase. (A)</p> Signup and view all the answers

Which factor induces over-expression of specific glycolytic isoforms in cancer cells?

<p>HIF-1alpha. (B)</p> Signup and view all the answers

What is a key feature of the glycolytic isoform switch in cancer metabolism?

<p>It promotes tumor growth through metabolic adaptation. (D)</p> Signup and view all the answers

Flashcards

Bistability in Glycolysis

Glycolysis can exist in multiple stable states (high or low flux) due to complex regulatory loops.

Glycolysis Flux

The rate at which glucose is broken down in glycolysis.

High Flux State

A state of glycolysis where glucose is broken down at a high rate.

Low Flux State

A state of glycolysis where glucose is broken down at a low rate.

Signup and view all the flashcards

Phosphofructokinase (PFK)

A key enzyme in glycolysis, whose activity is regulated to control flux.

Signup and view all the flashcards

Pyruvate Kinase (PK)

Another key enzyme in glycolysis, its activity is modulated to control flux.

Signup and view all the flashcards

Allosteric Regulation

Regulation of enzyme activity by a molecule binding to a site other than the active site.

Signup and view all the flashcards

Fructose-2,6-bisphosphate (F26BP)

A molecule that activates PFK, thus affecting glycolysis flux.

Signup and view all the flashcards

Fructose-1,6-bisphosphate (F16BP)

A molecule that activates PFK, affecting glycolysis flux.

Signup and view all the flashcards

Isozymes

Different forms of an enzyme, with similar functions, but with slight structural differences.

Signup and view all the flashcards

Warburg Effect

The phenomenon where cancer cells prioritize glycolysis even with oxygen present.

Signup and view all the flashcards

PFKFB

Bifunctional enzyme that controls the level of F26BP, influencing PFK activity.

Signup and view all the flashcards

K/P Ratio of PFKFB

The ratio of kinase to phosphatase activities of PFKFB.

Signup and view all the flashcards

Multiple Steady States in Glycolysis

Glycolysis can exist in multiple stable states (high or low flux) due to regulatory loops.

Signup and view all the flashcards

High Glycolytic Flux

Glucose is broken down at a high rate in glycolysis.

Signup and view all the flashcards

Low Glycolytic Flux

Glucose is broken down at a low rate in glycolysis.

Signup and view all the flashcards

Regulatory Loop Effect on Flux

The presence or absence of regulatory loops (Loop 1 and Loop 2) determines if glycolysis is at a high or low flux state in physiological conditions.

Signup and view all the flashcards

Glucose Concentration Effect on Glycolysis

Glucose concentration influences the switch between high and low flux states in glycolysis, depending on the presence of regulatory loops.

Signup and view all the flashcards

Effect of [NAD]/[NADH] Ratio on Glycolysis

[NAD]/[NADH] ratio has a marginal effect on glycolysis flux at low values and a big effect on flux at higher values.

Signup and view all the flashcards

[PYR]m/[LAC] ratio effect on glycolysis

The ratio of mitochondrial pyruvate and lactate concentration affects the glycolytic flux.

Signup and view all the flashcards

K/P Ratio of PFKFB

The ratio of kinase to phosphatase activities in PFKFB, controlling Fructose-2,6-bisphosphate (F26BP).

Signup and view all the flashcards

[PYR]m/[ALA] ratio effect on glycolysis

Ratio of mitochondrial pyruvate to alanine concentrations influences glycolytic flux.

Signup and view all the flashcards

ODE Model of Glycolysis

A mathematical model using differential equations to simulate glucose metabolism from uptake to glycolysis, lactate production, and mitochondrial pyruvate transport.

Signup and view all the flashcards

Steady-State Glycolysis Model

An algebraic model derived from ODE, focusing on the stable states of glycolysis reaction intermediates.

Signup and view all the flashcards

Glycolysis Intermediates

The molecules or compounds that are formed in the various stages of glycolysis.

Signup and view all the flashcards

Kinetic Parameters

Quantifiable values describing enzymatic reaction rates in glycolysis, including Vmax (maximum reaction rate).

Signup and view all the flashcards

Glucose Uptake Measurement

Determining the rate at which cells absorb glucose from the surrounding medium.

Signup and view all the flashcards

Lactate Production Measurement

Determining the rate at which cells produce lactate from glucose.

Signup and view all the flashcards

F6P-node simulation

A simulation of the F6P node, a key step in the glycolysis pathway, focused on the different K/P ratios, using a numerical solver.

Signup and view all the flashcards

Steady-state glycolysis flux

The constant rate of glucose breakdown in glycolysis under stable conditions.

Signup and view all the flashcards

PFKP as sole PFK isozyme

Simulation experiments focusing on only one type of PFK (Phosphofructokinase) enzyme.

Signup and view all the flashcards

Michaelis-Menten kinetics

A mathematical model describing enzyme-catalyzed reactions where the reaction rate increases with the substrate concentration until it reaches a maximum.

Signup and view all the flashcards

K/P ratio

A ratio used in the simulation of glycolysis to study the relative influence of kinase and phosphatase activities on the rate of the reactions.

Signup and view all the flashcards

Eigenvalue analysis

A mathematical method to determine the stability of a steady-state solution in a system, particularly important for reaction models.

Signup and view all the flashcards

Matlab's fsolve

A numerical solver in Matlab used to find solutions to systems of nonlinear equations, essential for obtaining steady-state solutions in the simulation.

Signup and view all the flashcards

Glucose concentration effect

Varying glucose levels affect the steady-state flux in the glycolysis system.

Signup and view all the flashcards

multiplicity of states

The existence of multiple stable states in a system, where the concentration has multiple possible values.

Signup and view all the flashcards

steady-state flux

The constant rate at which a reaction or pathway proceeds under stable conditions.

Signup and view all the flashcards

Warburg Effect

Cancer cells prioritize glycolysis even with oxygen present.

Signup and view all the flashcards

PFK/FBPase-2

Bifunctional enzyme controlling fructose-2,6-bisphosphate (F26BP).

Signup and view all the flashcards

F26BP

Molecule that activates PFK, affecting glycolysis flux.

Signup and view all the flashcards

Glycolysis Flux

Rate of glucose breakdown in glycolysis.

Signup and view all the flashcards

High Glycolytic Flux

Glucose broken down quickly in glycolysis.

Signup and view all the flashcards

Low Glycolytic Flux

Glucose broken down slowly in glycolysis.

Signup and view all the flashcards

Isozymes

Different forms of an enzyme with similar functions but slight structural differences.

Signup and view all the flashcards

K/P ratio

Ratio of kinase to phosphatase activities in PFKFB.

Signup and view all the flashcards

Akt/PKB inhibition of apoptosis

Akt/PKB, a protein kinase, can prevent early stages of programmed cell death (apoptosis).

Signup and view all the flashcards

Mitochondrial hexokinase

An enzyme in the mitochondria that's crucial for glycolysis and apoptosis prevention.

Signup and view all the flashcards

Pyruvate kinase M2 isoform

A specific form of pyruvate kinase, important for cancer cell metabolism and growth.

Signup and view all the flashcards

Tyrosine phosphorylation of PKM2

Phosphorylation of PKM2, a crucial step promoting the Warburg effect (cancer cell's preference for glucose metabolism).

Signup and view all the flashcards

Glucagon-stimulated phosphorylation

Glucagon, a hormone, triggers the process of phosphorylating pyruvate kinase in liver cells.

Signup and view all the flashcards

Bistable Rb-E2F switch

The Rb-E2F protein system can exist in two stable states, impacting cell cycle regulation.

Signup and view all the flashcards

HIF-1α modulation of cancer metabolism

HIF-1α, a protein, influences cancer cell energy use by triggering specific glycolytic isoform expression.

Signup and view all the flashcards

6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase

An enzyme that has a dual function--it's crucial for regulating glucose breakdown, and thus controlling cellular energy provision (glycolysis).

Signup and view all the flashcards

Phosphofructokinase (PFK) Regulation

PFK activity in glycolysis is controlled by regulatory molecules to adjust metabolic flux.

Signup and view all the flashcards

Fructose-2,6-bisphosphate (F26BP)

A key regulator that activates PFK, affecting glycolytic flux.

Signup and view all the flashcards

Lactate's Effect on Glycolysis

Lactate can downregulate glycolytic enzymes, influencing the rate of glucose breakdown.

Signup and view all the flashcards

PFKFB Activity

A bifunctional enzyme controlling the level of F26BP by converting between kinase and phosphatase.

Signup and view all the flashcards

K/P Ratio PFKFB

The relative activity of the kinase and phosphatase parts of PFKFB, influencing F26BP levels.

Signup and view all the flashcards

[PYR]m/[LAC] Ratio

The ratio of mitochondrial pyruvate to lactate affects the rate of glycolysis.

Signup and view all the flashcards

High Glycolytic Flux

Glucose breakdown at a high rate in glycolysis.

Signup and view all the flashcards

Low Glycolytic Flux

Glucose breakdown at a low rate in glycolysis.

Signup and view all the flashcards

Multistability in Glycolysis

Glycolysis can exist in multiple stable states (high or low flux) due to complex regulatory loops.

Signup and view all the flashcards

Study Notes

Bistability in Glycolysis Pathway

  • Glycolysis is tightly regulated by feedback and feed-forward allosteric mechanisms to maintain glucose homeostasis and respond to cellular needs.
  • Mathematical modeling shows glycolysis can exist in multiple steady states (high and low flux).
  • Two regulatory loops (phosphofructokinase and pyruvate kinase) create this bistability and control flux.
  • Cells switch between flux states with external stimuli (hormones, signals, oncogenic cues).
  • Different cell types express unique combinations of glycolytic isozymes, influencing their response to energy and biosynthetic needs.
  • Metabolic intervention, targeting glycolysis, may treat metabolic disorders and cancer.

Introduction

  • Glycolysis is a central glucose metabolism pathway for energy production and biosynthesis.
  • Cancer cells have high glycolytic flux and high lactate production (Warburg effect).
  • Highly proliferative tissues (fetal/stem) also exhibit high glycolytic rates.
  • Quiescent cells have low glucose uptake and catabolize glucose to CO2.
  • Allosteric regulation by metabolites (fructose-1,6-bisphosphate (F16BP), fructose-2,6-bisphosphate (F26BP), and phosphoenolpyruvate (PEP)) on enzymes (phosphofructokinase (PFK), pyruvate kinase (PK), phosphofructokinase/fructose-2,6-bisphosphatase (PFKFB)) are crucial.
  • Multiple isozymes of these enzymes exist, allowing for diverse regulatory behavior in different cell types.

Results

  • Bistability in the F6P-node:
    • Phosphofructokinase (PFK) isozymes (muscle, liver, platelet) have varying F16BP feedback activation sensitivities.
    • Without F16BP activation, PFK kinetics resembles Michaelis-Menten.
    • With F16BP activation (e.g., PFKL/M), bistable PFK flux behavior occurs (low and high flux states).
    • Stable PFK flux shifts sharply between states as glucose concentrations change.
    • F6P concentration ranges cause bistable behavior.
    • The K/P ratio (kinase/bisphosphatase activity) of PFKFB modulates bistability span, affecting the switch-up/switch-down F6P concentrations.
  • Bistable Behavior in Glycolysis:
    • Two regulatory loops (Loop 1 and Loop 2) from PFK, PFKFB and PK determine flux through the whole glycolysis pathway.
    • Without either regulatory loop, glycolysis flux exhibits Michaelis-Menten kinetics or no real bistability.
    • With only Loop 1, glycolysis flux increases.
    • By varying the K/P ratio, steady state fluxes shift and show bistability.
    • Cell isozyme expression and combination determine glycolysis response.

Bistability in Cultured Cells

  • HeLa cells exhibit bistable glucose metabolism.
  • Glucose consumption rate shifts between high and low when exposed to different glucose concentrations.
  • Lactate production rate mirrors this pattern.
  • The initial metabolic state (e.g., high or low glucose conditions) of the cells determines the response to subsequent glucose changes.

PFKFB Modulates Metabolic Switch

  • Four PFKFB isoforms with different K/P ratios influence response time.
  • Isozyme expression levels do not affect steady-state fluxes directly.
  • Changes in K/P ratio influence the flux state switching, allowing quick adjustments to energetic demands.

Studying That Suits You

Use AI to generate personalized quizzes and flashcards to suit your learning preferences.

Quiz Team

Related Documents

Bistability in Glycolysis PDF

More Like This

Regulation of Glycolysis Quiz
35 questions
Glycolysis: Metabolic Pathway and Regulation
6 questions
Use Quizgecko on...
Browser
Browser