Podcast
Questions and Answers
What happens to beta-catenin in Wnt signaling when no Wnt ligand is present?
What happens to beta-catenin in Wnt signaling when no Wnt ligand is present?
Beta-catenin is phosphorylated, ubiquitinated, and degraded by the proteasome.
What occurs when Wnt ligand binds to Frizzled?
What occurs when Wnt ligand binds to Frizzled?
The destruction complex is inactivated, beta-catenin stabilizes, accumulates, and binds TCF/LEF1, leading to transcription of target genes.
What are three processes Wnt is essential for?
What are three processes Wnt is essential for?
Cancer development, embryonic development, and adult stem cell maintenance.
What do high levels of Wnt lead to, and what does removing Wnt lead to?
What do high levels of Wnt lead to, and what does removing Wnt lead to?
What happens when GSK3 or AXIN are knocked out?
What happens when GSK3 or AXIN are knocked out?
What is the effect of RNF43/ZNRF3 on the Wnt cascade?
What is the effect of RNF43/ZNRF3 on the Wnt cascade?
What happens when RNF43/ZNRF3 are knocked out?
What happens when RNF43/ZNRF3 are knocked out?
What is the role of Lgr5?
What is the role of Lgr5?
How are LGR5+ cells visualized using lineage tracing?
How are LGR5+ cells visualized using lineage tracing?
What is the function of noggin?
What is the function of noggin?
What are the components of ENR medium, and what does each component do?
What are the components of ENR medium, and what does each component do?
What is the function of R-spondin?
What is the function of R-spondin?
What is intestinal homeostasis, and what role does Wnt signaling play?
What is intestinal homeostasis, and what role does Wnt signaling play?
What are organoids?
What are organoids?
Give four applications of organoids.
Give four applications of organoids.
What are three functions of the kidney?
What are three functions of the kidney?
How does APC mutation lead to Wnt upregulation?
How does APC mutation lead to Wnt upregulation?
What is the impact of KRAS/BRAF mutation?
What is the impact of KRAS/BRAF mutation?
What is the purpose of tumoroids?
What is the purpose of tumoroids?
What are the two main sections of the kidney, and what are their functional units?
What are the two main sections of the kidney, and what are their functional units?
Kidney has the capacity to regenerate after damage.
Kidney has the capacity to regenerate after damage.
What are current solutions for end-stage kidney disease (ESKD)?
What are current solutions for end-stage kidney disease (ESKD)?
What are the advantages and disadvantages of dialysis?
What are the advantages and disadvantages of dialysis?
What are the advantages and disadvantages of kidney transplantation?
What are the advantages and disadvantages of kidney transplantation?
What is the difference between a bioartificial kidney and bioengineered kidney?
What is the difference between a bioartificial kidney and bioengineered kidney?
What are the pros and cons of kidney dialysis?
What are the pros and cons of kidney dialysis?
What are challenges for cell membrane with a bio-artificial kidney?
What are challenges for cell membrane with a bio-artificial kidney?
What are challenges for Proximal tube cells with transporters for bio-artificial kidney?
What are challenges for Proximal tube cells with transporters for bio-artificial kidney?
What is important when developing a cell line from urine and kidneys for bio-artificial kidney?
What is important when developing a cell line from urine and kidneys for bio-artificial kidney?
How to develop a material with adherence for a bio-artificial kidney?
How to develop a material with adherence for a bio-artificial kidney?
How can active transport across the membrane developed for the bio-artificial kidney?
How can active transport across the membrane developed for the bio-artificial kidney?
What are three challenges in bio-artificial kidney development?
What are three challenges in bio-artificial kidney development?
What are the pros and cons of generating kidney organoids from human iPSC in vitro?
What are the pros and cons of generating kidney organoids from human iPSC in vitro?
What are the pros and cons of generating kidney organoids from adult stem cells (ASC)?
What are the pros and cons of generating kidney organoids from adult stem cells (ASC)?
How is the leak-tight assay achieved?
How is the leak-tight assay achieved?
What is the selective transport assay?
What is the selective transport assay?
What are the challenges with bioengineered kidney development?
What are the challenges with bioengineered kidney development?
What are the applications of kidney organoid culture?
What are the applications of kidney organoid culture?
What are four examples for the use of bioengineered kidney?
What are four examples for the use of bioengineered kidney?
What happens with liver histology blood that enters?
What happens with liver histology blood that enters?
What is spheroid formation and use?
What is spheroid formation and use?
What is VTE?
What is VTE?
What are three primary and more functions of blood vessels?
What are three primary and more functions of blood vessels?
What are three example needs for vascular replacement?
What are three example needs for vascular replacement?
What is the anatomical structure of blood vessels?
What is the anatomical structure of blood vessels?
Give 3 types of capillaries and differences.
Give 3 types of capillaries and differences.
What are endothelial cells?
What are endothelial cells?
What are mural cells?
What are mural cells?
What is the process of angiogenesis?
What is the process of angiogenesis?
What are challenges for stem cells of vasculature?
What are challenges for stem cells of vasculature?
What 3 ways are there to making regenerative vascular replacement?
What 3 ways are there to making regenerative vascular replacement?
What is paracrine hypothesis?
What is paracrine hypothesis?
What are current approaches to heal injured vasculature?
What are current approaches to heal injured vasculature?
What do you want in a new approach to healing vasculature?
What do you want in a new approach to healing vasculature?
What are the steps in vitro approach for vascular tissue engineering?
What are the steps in vitro approach for vascular tissue engineering?
List 5 general factors that can influence functional tissue outcome.
List 5 general factors that can influence functional tissue outcome.
Give 3 general questions when designing your own scaffold.
Give 3 general questions when designing your own scaffold.
Describe paracrine signaling.
Describe paracrine signaling.
Describe extracellular vesicles and their structure.
Describe extracellular vesicles and their structure.
Why does damaged tissue become sticky due to expression of adhesion molecules?
Why does damaged tissue become sticky due to expression of adhesion molecules?
How does making of exosomes work?
How does making of exosomes work?
How does making microvesicles work?
How does making microvesicles work?
What is the content of EVs?
What is the content of EVs?
How to filter vesicles out of cells?
How to filter vesicles out of cells?
What are functions of EVs?
What are functions of EVs?
Describe the canonical WNT signaling pathway when Wnt ligand is NOT present.
Describe the canonical WNT signaling pathway when Wnt ligand is NOT present.
What is the result of GSK3 or AXIN knockout (KO) in the context of Wnt signaling?
What is the result of GSK3 or AXIN knockout (KO) in the context of Wnt signaling?
How do RNF43/ZNRF3 affect Wnt signaling?
How do RNF43/ZNRF3 affect Wnt signaling?
What is the consequence of a double knockout (Dubbel KO) of RNF43/ZNRF3?
What is the consequence of a double knockout (Dubbel KO) of RNF43/ZNRF3?
Describe the role of Lgr5 in intestinal stem cells and its interaction with RNF43/ZNRF3.
Describe the role of Lgr5 in intestinal stem cells and its interaction with RNF43/ZNRF3.
Explain the concept of lineage tracing in the context of intestinal crypts and LGR5.
Explain the concept of lineage tracing in the context of intestinal crypts and LGR5.
What is the function of Noggin in regenerative medicine?
What is the function of Noggin in regenerative medicine?
What is the role of EGF in intestinal cell culture?
What is the role of EGF in intestinal cell culture?
Describe the components of ENR medium and their respective functions in organoid culture.
Describe the components of ENR medium and their respective functions in organoid culture.
What is the function of R-spondin and how does it interact with LGR5, RNF43, and ZNRF3?
What is the function of R-spondin and how does it interact with LGR5, RNF43, and ZNRF3?
Describe the concept of intestinal homeostasis and the roles of crypts, villi, and Wnt signaling.
Describe the concept of intestinal homeostasis and the roles of crypts, villi, and Wnt signaling.
Explain the feedback regulation of Wnt signaling in intestinal homeostasis, including the roles of LGR5, RNF43, and ZNRF3.
Explain the feedback regulation of Wnt signaling in intestinal homeostasis, including the roles of LGR5, RNF43, and ZNRF3.
Define organoids and describe their formation from stem/progenitor cells.
Define organoids and describe their formation from stem/progenitor cells.
Describe the biological and translational applications of organoids in research and medicine.
Describe the biological and translational applications of organoids in research and medicine.
List three homeostatic functions of the kidney.
List three homeostatic functions of the kidney.
What are the homeostatic functions regulated by the kidney?
What are the homeostatic functions regulated by the kidney?
How does APC mutation lead to Wnt upregulation and cancer?
How does APC mutation lead to Wnt upregulation and cancer?
How does KRAS/BRAF mutation contribute to cancer development?
How does KRAS/BRAF mutation contribute to cancer development?
Define tumoroids and describe their significance in personalized medicine.
Define tumoroids and describe their significance in personalized medicine.
Describe the structures of the kidney, including the cortex, medulla, nephrons, glomeruli, and tubules.
Describe the structures of the kidney, including the cortex, medulla, nephrons, glomeruli, and tubules.
The kidney has a strong regeneration capacity where lost nephrons can be rebuilt.
The kidney has a strong regeneration capacity where lost nephrons can be rebuilt.
What are the current therapeutic approaches for end-stage kidney disease (ESKD)?
What are the current therapeutic approaches for end-stage kidney disease (ESKD)?
Describe the advantages and disadvantages of dialysis as a treatment for ESKD.
Describe the advantages and disadvantages of dialysis as a treatment for ESKD.
Describe the advantages and disadvantages of kidney transplantation as a treatment for ESKD.
Describe the advantages and disadvantages of kidney transplantation as a treatment for ESKD.
What is the primary difference between a bioartificial kidney and bioengineered kidney?
What is the primary difference between a bioartificial kidney and bioengineered kidney?
Explain the limitations of normal kidney dialysis and how a bio-artificial kidney aims to overcome these.
Explain the limitations of normal kidney dialysis and how a bio-artificial kidney aims to overcome these.
Describe the key considerations in developing a cell line for a bio-artificial kidney.
Describe the key considerations in developing a cell line for a bio-artificial kidney.
What factors are important for developing adherence material for a bio-artificial kidney?
What factors are important for developing adherence material for a bio-artificial kidney?
How would you develop active transport across the membrane in a bio-artificial kidney, and what controls would you use?
How would you develop active transport across the membrane in a bio-artificial kidney, and what controls would you use?
Describe the challenges in bio-artificial kidney development and give examples for each.
Describe the challenges in bio-artificial kidney development and give examples for each.
Describe the pros and cons of using human iPSCs to generate kidney organoids for bioengineered kidneys.
Describe the pros and cons of using human iPSCs to generate kidney organoids for bioengineered kidneys.
Describe the pros and cons of using adult stem cells (ASC) to generate kidney organoids for bioengineered kidneys.
Describe the pros and cons of using adult stem cells (ASC) to generate kidney organoids for bioengineered kidneys.
Describe a leak-tight assay and what it measures:
Describe a leak-tight assay and what it measures:
Describe a selective transport assays and what it measures?
Describe a selective transport assays and what it measures?
What are the major challenges associated with bioengineered kidney development?
What are the major challenges associated with bioengineered kidney development?
List four examples of the applications of kidney organoid culture.
List four examples of the applications of kidney organoid culture.
Name four examples of how bioengineered kidneys can be used.
Name four examples of how bioengineered kidneys can be used.
Briefly explain how liver histology samples are obtained and used?
Briefly explain how liver histology samples are obtained and used?
Explain the process of spheroid formation and their use with bioprinting?
Explain the process of spheroid formation and their use with bioprinting?
What is Vascular Tissue Engineering (VTE) and what are the biggest obstacles?
What is Vascular Tissue Engineering (VTE) and what are the biggest obstacles?
What are the primary functions of blood vessels? Provide at least 3 more.
What are the primary functions of blood vessels? Provide at least 3 more.
Give 3 examples of a need for vascular replacement
Give 3 examples of a need for vascular replacement
Describe the anatomical structure of blood vessels and the purpose of the cells in them.
Describe the anatomical structure of blood vessels and the purpose of the cells in them.
Describe the 7 steps of cardiovascular system development
Describe the 7 steps of cardiovascular system development
Name the 3 types of capillaries and briefly describe them.
Name the 3 types of capillaries and briefly describe them.
What functions are endothelial cells used for?
What functions are endothelial cells used for?
What functions are mural cells used for?
What functions are mural cells used for?
Define Angiogenesis and its steps.
Define Angiogenesis and its steps.
List the 4 progenitor cells and the challenges of the use of these stem cells for the regeneration of vasculature
List the 4 progenitor cells and the challenges of the use of these stem cells for the regeneration of vasculature
List the 3 main approaches for vascular engineering
List the 3 main approaches for vascular engineering
What is the paracine hypothesis in relation to stem cells and regenerative medicine?
What is the paracine hypothesis in relation to stem cells and regenerative medicine?
List the 2 current approaches to geal injured vasculature
List the 2 current approaches to geal injured vasculature
List the Workflow for the in vitro approach for vascular tissue engineering
List the Workflow for the in vitro approach for vascular tissue engineering
List some secreted proteins that are found in paracine signaling
List some secreted proteins that are found in paracine signaling
Name the 3 extracellular vescicles
Name the 3 extracellular vescicles
Paracrine signalling, is when a cell produces a signal to induce changes in distant cells and tissues.
Paracrine signalling, is when a cell produces a signal to induce changes in distant cells and tissues.
Describe the Content of EVs
Describe the Content of EVs
How do you filter vesciles out of cells?
How do you filter vesciles out of cells?
Describe a function of the EVs
Describe a function of the EVs
What are Advatages of exosomes as treatment?
What are Advatages of exosomes as treatment?
Which is more difficult MSCS vs EVs, and why, with setting up a regultation for treatment?
Which is more difficult MSCS vs EVs, and why, with setting up a regultation for treatment?
What are the steps in setting up experiment with Extracellular verticles?
What are the steps in setting up experiment with Extracellular verticles?
What is the result of GSK3 or AXIN knockout?
What is the result of GSK3 or AXIN knockout?
What is the role of RNF43/ZNRF3 in Wnt signaling?
What is the role of RNF43/ZNRF3 in Wnt signaling?
What results from a double knockout of RNF43/ZNRF3?
What results from a double knockout of RNF43/ZNRF3?
How does Lgr5 overcome the effects of RNF43 and ZNRF3?
How does Lgr5 overcome the effects of RNF43 and ZNRF3?
What components does ENR medium consist of and what is its purpose?
What components does ENR medium consist of and what is its purpose?
What is the role of R-spondin?
What is the role of R-spondin?
What characterizes intestinal homeostasis?
What characterizes intestinal homeostasis?
Name three biological applications of organoids.
Name three biological applications of organoids.
Name three translational applications of organoids
Name three translational applications of organoids
Give three main functions of the kidney.
Give three main functions of the kidney.
What is the result of an APC mutation?
What is the result of an APC mutation?
What occurs due to a KRAS/BRAF mutation?
What occurs due to a KRAS/BRAF mutation?
What is the purpose of using tumoroids?
What is the purpose of using tumoroids?
What are the functional units of the kidney and where are they located?
What are the functional units of the kidney and where are they located?
The kidney has a great capacity to regenerate after damage.
The kidney has a great capacity to regenerate after damage.
What are the current therapeutic approaches for ESKD?
What are the current therapeutic approaches for ESKD?
What is the primary concern that bio-artificial kidneys address over normal kidney dialysis?
What is the primary concern that bio-artificial kidneys address over normal kidney dialysis?
What are some key aspects in the development of a cell line for a bio-artificial kidney?
What are some key aspects in the development of a cell line for a bio-artificial kidney?
What materials are being developed for adherence in bio-artificial kidneys?
What materials are being developed for adherence in bio-artificial kidneys?
How is active transport across the membrane being developed in bio-artificial kidneys?
How is active transport across the membrane being developed in bio-artificial kidneys?
What are the challenges in developing bio-artificial kidneys?
What are the challenges in developing bio-artificial kidneys?
How is leak-tightness assessed in kidney organoids?
How is leak-tightness assessed in kidney organoids?
How is selective transport assessed in kidney organoids?
How is selective transport assessed in kidney organoids?
What are key challenges with bioengineered kidneys?
What are key challenges with bioengineered kidneys?
Give four examples of applications of kidney organoid culture.
Give four examples of applications of kidney organoid culture.
Provide four examples of the use of bioengineered kidneys.
Provide four examples of the use of bioengineered kidneys.
What does the blood that enters the liver come from?
What does the blood that enters the liver come from?
Describe speriod formation.
Describe speriod formation.
For what purposes are liver speroids used?
For what purposes are liver speroids used?
What are the main cells/layers found in blood vessels and what functions do these perform?
What are the main cells/layers found in blood vessels and what functions do these perform?
Outline the stages of cardiovascular system development
Outline the stages of cardiovascular system development
Name and describe the 3 different types of capillaries?
Name and describe the 3 different types of capillaries?
Describe endothelial cells.
Describe endothelial cells.
Describe mural cells.
Describe mural cells.
How does Angiogenesis occur?
How does Angiogenesis occur?
Give the 4 types of vascular stem cells
Give the 4 types of vascular stem cells
Outline the paracine hypothesis
Outline the paracine hypothesis
What approaches are currently used to geal injured vasculature
What approaches are currently used to geal injured vasculature
List some things we want in a new approach to help heal vasculature
List some things we want in a new approach to help heal vasculature
Outline the steps for in vitro approach for vascular tissue engineering
Outline the steps for in vitro approach for vascular tissue engineering
List general factors that can influence functional tissue outcome (whitch VTE)
List general factors that can influence functional tissue outcome (whitch VTE)
List General questions when designing your own scaffold:
List General questions when designing your own scaffold:
Name different types of extracellular vescicles
Name different types of extracellular vescicles
Describe extracellular/paracrine signaling
Describe extracellular/paracrine signaling
Briefly describe the makig of exosomes
Briefly describe the makig of exosomes
Briefly describe the makig of microvesicles
Briefly describe the makig of microvesicles
Outline the content of EVs
Outline the content of EVs
Outline the steps needed to filters vesciles out of cells
Outline the steps needed to filters vesciles out of cells
What can EV's do?
What can EV's do?
Give someexamples of the clinical application of exosomes
Give someexamples of the clinical application of exosomes
Contrast MSSc vs EVs
Contrast MSSc vs EVs
Outline how you situp an experiment with EVs
Outline how you situp an experiment with EVs
What do Alpha and Bèta cells do?
What do Alpha and Bèta cells do?
What is lacking with diabetes?
What is lacking with diabetes?
Outline type 1 diabetes treatment
Outline type 1 diabetes treatment
What are some downsides and complications associated with a pancreas transplantation
What are some downsides and complications associated with a pancreas transplantation
What are some of the complications with Islet transplantation
What are some of the complications with Islet transplantation
What are themain 2 downsides of organ transplantation
What are themain 2 downsides of organ transplantation
Ductal cells provide neogenesis from duct epithelium during what 3 instances?
Ductal cells provide neogenesis from duct epithelium during what 3 instances?
List uses of SC islets
List uses of SC islets
List ways you can overcome need for immune supression when using stem cells
List ways you can overcome need for immune supression when using stem cells
How did initial clinical trials for translational cardiac RM perform?
How did initial clinical trials for translational cardiac RM perform?
How to improve quality of pre-clinical research?
How to improve quality of pre-clinical research?
How do you go about Optimizing large animal models
How do you go about Optimizing large animal models
Flashcards
Wnt Signaling
Wnt Signaling
Wnt binds Frizzled, inactivating the destruction complex. β-catenin accumulates, enters the nucleus, and activates transcription of target genes.
GSK3 or AXIN KO effect
GSK3 or AXIN KO effect
Disruption of the β-catenin destruction complex, leading to constant Wnt pathway activation regardless of Wnt presence.
RNF43/ZNRF3 Function
RNF43/ZNRF3 Function
Transmembrane ubiquitin ligases that downregulate Wnt signaling by internalizing Frizzled receptors.
Lgr5 Function
Lgr5 Function
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Lineage Tracing
Lineage Tracing
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Noggin
Noggin
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EGF
EGF
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ENR medium components
ENR medium components
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R-spondin
R-spondin
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Intestinal Homeostasis
Intestinal Homeostasis
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Organoids
Organoids
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Applications of Organoids
Applications of Organoids
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Functions of Kidney
Functions of Kidney
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APC mutation effect
APC mutation effect
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KRAS/BRAF mutation effect
KRAS/BRAF mutation effect
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Tumoroids
Tumoroids
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Kidney Functional Units
Kidney Functional Units
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Regenerative Capacity of Kidney
Regenerative Capacity of Kidney
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Chronic Kidney Disease (CKD)
Chronic Kidney Disease (CKD)
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Current Therapeutic Approaches for ESKD
Current Therapeutic Approaches for ESKD
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Bioartificial vs Bioengineered Kidney
Bioartificial vs Bioengineered Kidney
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Kidney Dialysis Pro's and Cons
Kidney Dialysis Pro's and Cons
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Bio-artificial kidney function
Bio-artificial kidney function
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Development of Cell Line for Bio-artificial Kidney
Development of Cell Line for Bio-artificial Kidney
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Developing Adherence Material for Bio-artificial Kidney
Developing Adherence Material for Bio-artificial Kidney
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Developing Active Transport Across Membrane Bio-artificial Kidney
Developing Active Transport Across Membrane Bio-artificial Kidney
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Challenges in Bio-artificial Kidney Right Now
Challenges in Bio-artificial Kidney Right Now
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Organoids and Stem Cells for Bioengineered Kidney iPSC
Organoids and Stem Cells for Bioengineered Kidney iPSC
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Organoids and Stem Cells for Bioengineered Kidney ASC
Organoids and Stem Cells for Bioengineered Kidney ASC
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Leak-tight Assay
Leak-tight Assay
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Selective Transport Assay
Selective Transport Assay
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Challenges with Bioengineered Kidney
Challenges with Bioengineered Kidney
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Applications of Kidney Organoid Culture
Applications of Kidney Organoid Culture
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Use of Bioengineered Kidney 4 Examples
Use of Bioengineered Kidney 4 Examples
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Liver histology
Liver histology
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Speriod Formation and Use
Speriod Formation and Use
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Vascular Tissue Engineering (VTE)
Vascular Tissue Engineering (VTE)
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Functions of Blood Vessels
Functions of Blood Vessels
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Need for Vascular Replacement
Need for Vascular Replacement
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Anatomical Structure of Blood Vessels
Anatomical Structure of Blood Vessels
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Cardiovascular System Development
Cardiovascular System Development
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3 Types of Capillaries
3 Types of Capillaries
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Endothelial Cells
Endothelial Cells
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Mural Cells
Mural Cells
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Angiogenesis
Angiogenesis
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Vascular Progenitor Cells
Vascular Progenitor Cells
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Making Regenerative Vascular Replacement
Making Regenerative Vascular Replacement
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paracine hypothesis
paracine hypothesis
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current approaches to geal injured vasculature
current approaches to geal injured vasculature
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what we want in new approach healing vasculature
what we want in new approach healing vasculature
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in vitro approach for vascular tissue engineering
in vitro approach for vascular tissue engineering
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Study Notes
Wnt Signaling
- Canonical WNT signaling occurs when no Wnt ligand is present, Frizzled is not activated.
- A destruction complex of Axin, APC, CKIα, and GSK-3β phosphorylates β-catenin, leading to its ubiquitination and degradation, preventing transcription.
- When Wnt is present and binds to Frizzled, the destruction complex is inactivated, stabilizing β-catenin.
- Stabilized β-catenin accumulates and travels to the nucleus, binding TCF/LEF1 to transcribe target genes.
- Wnt signaling is vital for cancer, embryonic development, and adult stem cell maintenance.
- High Wnt levels promote stem cell maintenance, while Wnt removal leads to cell differentiation.
GSK3 or AXIN KO
- Knockout (KO) of GSK3 or AXIN, components of the β-catenin destruction complex, prevents β-catenin breakdown.
- Prevents breakdown of beta catenin so Wnt pathway is always active, independent of Wnt ligand presence.
- Results in cystic intestinal organoids due to the continuous activation of the Wnt pathway, inhibiting differentiation.
RNF43/ZNRF3
- These are transmembrane ubiquitin ligases that ubiquitinate the Frizzled receptor, leading to its internalization.
- Internalization of Frizzled receptors reduces the potency of the Wnt cascade, downregulating signaling.
- Double knockout (KO) of RNF43/ZNRF3 results in more Wnt activation due to increased Frizzled receptors on the membrane.
- More Frizzled receptors on the membrane leads to cystic intestinal organoids
- Wnt signaling is still needed, RNF43/ZNRF3 are just regulators
Lgr5
- Intestinal stem cell marker able to counter the effects of RNF43 and ZNRF3, by binding to R-spondin.
- The R-spondin ligand binds to LGR5 on the cell membrane, sequestering RNF43 and ZNRF3.
- Sequestration of RNF43/ZNRF3 causes more receptors available for Wnt signaling.
Lineage Tracing (Crypt)
- LGR5 marks crypt base columnar cells (CBCs) that act as stem cells.
- These cells can be visualized by inserting GFP behind LGR5 in the DNA, causing green fluorescence only in the crypt base.
- Inserting a Cre gene after LGR5 allows Cre enzyme expression in LGR5+ cells.
- Cre enzyme can remove stop codons in front of a LacZ region, leading to blue color expression in the cell and its progeny.
- LacZ expression is retained even after cell differentiation, allowing visualization of the descendants of LGR5+ cells.
- This method is called lineage tracing.
Noggin
- BMP inhibitor is used to inhibit differentiation.
EGF
- Growth factor, used for intestinal cell proliferation.
ENR Medium
- ENR medium contains:
- EGF which promotes intestinal cell proliferation.
- Noggin which inhibits BMP to prevent differentiation.
- R-spondin acts as a Wnt agonist to maintain stem cell properties.
- Matrigel (extracellular matrix) forms a hydrogel supporting structure with collagens and laminins.
- This combination forms gut-like structures known as organoids.
R-spondin
- Wnt agonist that promotes stem cell maintenance.
- It can bind to LGR5 on stem cells, which sequesters RNF43 and ZNRF3.
- Sequestration leads to more available receptors for Wnt signaling.
Intestinal Homeostasis
- The intestine is composed of crypt and villus regions.
- Crypts contain stem cells and Paneth cells.
- Paneth cells produce cells that migrate up the crypt and begin differentiation.
- Cell exclusion occurs at the top of the villus within 5 days.
- Wnt signaling is high in the crypt, maintaining stem cell properties.
- Wnt is produced by Paneth cells (also EGF and DLL) and the mesenchyme (fibroblasts and myofibroblasts).
- Wnt target genes include LGR5 and RNF43/ZNRF3.
- LGR5 binds R-spondin, inhibiting RNF43/ZNRF3.
- RNF43 and ZNRF3 inhibit Wnt signaling by stimulating ubiquitination.
- EGF promotes intestinal proliferation.
- Noggin inhibits BMP, expanding crypt numbers.
- R-spondin is a Wnt agonist for stem cell maintenance.
Organoids
- Three-dimensional in vitro cultures grown from stem or progenitor cells.
- Cells self-organize through cell sorting and spatially restricted cell lineages.
- Organoids can be formed from pluripotent or adult stem cells of a tissue.
Applications of Organoids
- Biological applications include:
- Studying basic gene functions like WNT signaling.
- Investigating cellular and molecular processes.
- Studying signaling pathways.
- Translational applications include:
- Studying pathogen-host interactions in infectious diseases.
- In vitro disease modeling (hereditary diseases, cancer).
- Toxicology studies.
- Personalized medicine by using adult stem cells from healthy individuals or generating mutations to create tumor-like organoids.
- Drug testing and screening.
- Regenerative therapy via organoid transplantation.
Function of Kidney
- Kidneys regulate homeostasis.
- They are involved in hormone secretion/regulation.
- Kidneys perform nutrient reabsorption and excretion.
- Homeostasis functions include:
- Secretion and reabsorption of molecules and ions (Na+, K+, Ca2+, Mg2+).
- Acid-base balance (H+, HCO3-).
- Nitrogen waste product removal (urea, uric acid).
- Water regulation.
APC Mutation
- APC mutation leads to Wnt upregulation, which can cause cancer.
- The ability to undergo metastasis results from loss of dependency on niche-specific signals, such as after APC knockout.
- Other cancer mutations include TP53, SMAD4, and KRAS/BRAF.
KRAS/BRAF Mutation
- EGF is upregulated and BMP is downregulated
- Cancer mutation.
- Other cancer mutations include TP53, SMAD4, and APC.
Tumoroids
- Organoids can be made from normal or tumor tissue to resemble a patient's organ.
- Tumoroids can be used for drug screening before starting therapy.
- Screening can help predict the clinical outcome and prevent unnecessary treatment.
Kidney
- The kidney consists of an outer renal cortex and an inner renal medulla.
- The functional units of the kidney are nephrons.
- Nephrons consist of the glomerulus and tubules leading to the ureter.
- Glomeruli, located in the cortex, are essential for blood filtration.
- The tubular parts have homeostatic and endocrine functions:
- Selective secretion and absorption.
- Production of erythropoietin and renin.
Regenerative Capacity of Kidney
- The kidney has limited regenerative capacity and cannot regenerate lost nephrons.
- Nephrogenesis cannot occur after birth.
- Troy+ cells are kidney stem cells, present during embryonic development, but minimal postnatally and in adults.
- Treatments for kidney failure are dialysis or transplantation.
Chronic Kidney Disease
- 10% of the population has chronic kidney disease (CKD), especially the elderly.
- Many people are unaware they have it.
- The number of cases is increasing.
- In the Netherlands, 10,000 people have transplants, and 6,500 are on dialysis.
- Dialysis has a survival rate of 5 years.
- CKD accounts for 2% of healthcare spending.
- The final outcome of kidney disease is end-stage kidney disease (ESKD), with less than 10% kidney function remaining.
Current Therapeutic Approaches for ESKD
- Dialysis removes waste and excess fluid from the blood.
- Advantages: Relatively simple, rapid exchange of small molecules.
- Disadvantages: Does not replace all kidney functions, intermittent, heavy impact on patient's life, >20% mortality/year.
- Transplantation replaces all kidney functions.
- Advantage: True renal replacement.
- Disadvantages: Shortage of donor organs, rejection, maximum 10-year lifespan, immunosuppression leading to infection and malignancies.
Bioartificial Kidney vs. Bioengineering of a Kidney
- A bioengineered kidney aims to introduce a generated organ or functional tissue, mimicking transplantation.
- A bioartificial kidney mimics dialysis by only taking over part of the kidney functions.
Kidney Dialysis: Pros and Cons
- Hemodialysis and Peritoneal dialysis
- Pros: simple, fast
- Cons: Not all kidney functions are replaced (no exchange of middle and large molecules, no active transport, no hormone production, no neurological regulation), intermittent, impact patients life, 20% mortality/yr.
Bio-artificial Kidney
- Normal kidney dialysis does not allow passage of larger molecules, which is a problem for protein-toxin bound molecules.
- Requirements:
- Membrane:
- Cell membrane adhesion.
- Clearance on fiber.
- Scalability in vivo biocompatibility.
- Proximal tube cells with transporters:
- Controlled growth.
- Low immunogenic response.
- Proper transporter function.
- Not tumorigenic.
- Membrane:
Development of Cell Line for Bio-artificial Kidney
- Process of developing a cell line:
- Immortalization of cells.
- Using cells from urine and kidneys.
- Controlled growth by integrating an oncogene that proliferates only at a certain temperature.
- OAT1 is an essential transporter examined using fluorescence to track uptake.
- Immune activation is checked.
- Oncogenicity potential is checked by injecting cells into mice and looking for tumor formation.
Developing Adherence Material for Bio-artificial Kidney
- Use of living membranes.
- Muscles can bind to any surface with L-dopa, which uses hydrogen bonds, covalent bonds, and metal bonds.
- Collagen type 4 (IV) is used.
- Cells adhere with muscle and collagen IV (and PES HF).
Developing Active Transport Across Membrane for Bio-artificial Kidney
- Kidney on a chip to research transport over membrane.
- Tracked fluorescent compounds for specific transporters, indicating uptake.
- Protein-bound toxins were also decreased using this.
- Control: Blocked transporter resulted in only unspecific uptake and not removal of protein-bound toxins.
- Experiment comparison with protein-bound toxins vs. removal of loose toxins:
- Bound form (indoxyl sulfate) had more transport.
- Suggests protein facilitates transport.
- Albumin in kidney patients is different and toxins bind even stronger, which results in less clearance.
Challenges in Bio-Artificial Kidney
- Scalability: Up to 5 fibers currently, needing to increase surface area.
- Packing of fibers requires inner seeding:
- Ensuring proper monolayer.
- Minimizing fiber size for better adhesion.
- Coiling fibers using bioprinting to make perfusable models.
- Alternatives to fibers:
- Using silica wafers to improve filtration due to defined pores but this make them more fragile and have limited porosity.
- Demonstration of in vivo safety and efficacy.
- Moving from extracorporeal to implantable systems for less clinic visits.
- Expanding tubules for drug nephrotoxicity screenings like liver and gut on chips.
Organoids and Stem Cells for Bioengineered Kidney iPSC
- Generating kidney organoids from human iPSC in vitro:
- Using Yamanaka factors for resetting, then exposing cells to CHIR and FGF9. Organoid pros:
- Organized near-physiological nephron structure with glomerulus and tubule.
- Contain epithelial and mesenchyme cells. Organoid cons:
- Cells stay immature; lack transporters.
- Teratoma formation risk.
- Inefficient reprogramming.
- Lack vascularization and urine collection system.
- Not clinically compatible and time-consuming.
Organoids and Stem Cells for Bioengineered Kidney ASC
- Generating kidney organoids from adult stem cells (ASC) = tuboloid (from kidney tubular epithelial cells)
- Using urine or kidney biopsy to dedifferentiate to progenitor cells which resemble adult stem cells. Organoid Characteristics:
- Cystic morphology (mimics tubules).
- Single layered cuboidal epithelium.
- Genomic stability.
- Polarization.
- Leak-tight.
- Selective transport.
- Easily derived. Organoid pros:
- Easy to expand, stable, autologous, leak-tight. Organoid cons:
- No glomerulus,
- No mesenchyme,
- Not clinically compatible (animal derived matrigel etc.).
- No vascularization.
- No common urine collection system.
Leak-Tight Assay
- Used to testing for kidney organoids
- Inulin-FITC: An increase in fluorescence intensity indicates leakage.
- TEER: High electrical resistance indicates a nice monolayer.
Selective Transport Assay
- Used to testing for kidney organoids
- CDFDA is placed in a basin and with a cell layer, where fluorescence is then checked.
- A control uses a transporter inhibitor.
Challenges with Bioengineered Kidney
- Challenges with bioengineered kidneys:
- Differentiation
- Proliferation
- Scale and size
- Matrigel/ECM
- Structure/organization
- Integration
- Function
Applications of Kidney Organoid Culture
- Applications include:
- In vitro modeling of nephrogenesis
- Ex vivo studies of organ (patho)physiology
- Disease modeling
- Drug and toxicity screening for personalized medicine
- Bioartificial kidney development
- Bioengineering of the kidney
Bioengineered Kidney Use: 4 Examples
- Bioengineering whole kidneys: Scaffold seeding with decellularized whole kidneys.
- Transplantation of PSC kidney organoids: Using a sheet of iPSC as a "band-aid" on the kidney.
- Bioprinting kidneys (or one nephron): Printing cells and hydrogels.
- nKSPC therapy in the kidney: Administration of nKSPC induces de novo SIX2 activation in proximal tubules
Liver Histology
- Blood enters the liver via the portal vein (80%), derived from the intestines.
- Autologous transplantation: Cell isolation, expansion, co-culture with support cells, spheroid quality control, extrusion-based bioprinting, and transplantation is performed.
- Replacement of animal models is done to show toxicity better via toxicity tests with bioprinting liver organoids and mimicking blood flow; focus on personalized medicine
- Difficulties: dedifferentiation happens fast, need for vascularization in spheroids, fusing to recipient tissue.
Spheroid Formation and Use
- Liver organoids used in 3D via dual extrusion nozzle: hydrogel = MMP degradable, PEG based, hydrolytically cleavable and vasculature with endothelial cells and gelatin based.
- Spheroid formation: Gravity-based triculture (liver organiods ICOs, mesenchymal source, HUBECs) 120 micrometers within 4 days.
- Transplanting spheroids:
- Personalized medicine and testing drug toxicity.
- Whole organ engineering.
- Transplantation?
- Spheroids automatically fuse with tissue. Vasculature tests with immune deficient mice with a with dye to show connectivity and proved that the vasculature in the construct should connect to the vasculature
Vascular Tissue Engineering (VTE)
- Vascular Tissue Engineering (VTE) assembles functional constructs to restore, maintain, or improve damaged tissue or whole organs by creating new blood vessels
- Making new blood vessels within other tissues/organs = vascularized tissue engineering.
- Obstacles:
- The diffusion limit of oxygen is 200 μm.
- The limit of host vessel growth is tens of microns/day.
Functions of Blood Vessels
- Primary functions:
- Enable gas exchange, supply nutrients, and remove waste.
- Other functions:
- Endocrine signaling, inflammation, anti-coagulation, vasodilation/vasoconstriction, and immunological surveillance.
- Regenerative vascular replacements should perform these functions.
- Oxygen diffusion limit: 200 micrometers; beyond this distance causes hypoxia.
- Host vessel in-growth range limit: tens of microns/day.
- All tissues need vascularization.
Need for Vascular Replacement (3 Examples)
- Clinical need for small diameter vessels (≤6mm)
- Coronary artery disease leads to myocardial infarction (managed with grafts).
- Chronic kidney disease needs vascular access for hemodialysis (often uses suboptimal Teflon/plastic grafts).
- Other needs: deep vein thrombosis, artery disease, strokes.
Anatomical Structure of Blood Vessels
- Endothelial lining (HUVECs):
- Proliferates quickly, selective barrier, anti-coagulant surface, helps vasodilation/constriction, and is a mechanosensor in angiogenesis
- Mural cells (support cells):
- (Smooth muscle cells and pericytes).
- Provide structure/stability, manage blood pressure, vascular remodeling, vascular wall pathologies, and ECM production
- Smaller diameter = decrease in blood pressure.
- Diameters:
- Aorta = 25mm
- Femoral artery = 10 mm
- Coronary artery = 3 mm
- Small artery = 100 micrometer
- Arteriole = 5-100 micrometer
- Capillary = 3-6 micrometer
- Below 6 = small artery considered one to be made within vascular replacements
Cardiovascular System Development
- Formation of blood vessels, blood, and heart.
- 1st functional organ system to develop during vertebrate development.
- Vasculogenesis = formation of a capillary plexus without a pre-existing vasculature structure driven by growth of fetus.
- Sequence:
- Zygote -> blastula -> gastrula -> mesoderm formation -> blood island differentiation -> fusion of blood islands and endothelial cell differentiation -> primary capillary plexus.
- Mesoderm forms circulatory system in 2 different routes:
- Extraembryonic one: angioblasts + heamapoetic progenitors (blood islands)
- Intraembryonic one: angioblasts only
- Cells distinguish between artery and vein.
3 Types of Capillaries
- Continuous capillary:
- Cells are closely bound to each other.
- Heavily regulated transport via transcytosis.
- Examples: blood-brain barrier in the brain and blood-air barrier in the lungs.
- Fenestrated capillary:
- Fenestrae (pores) with diaphragm.
- Diffusion of fluid and small molecules based on pressure.
- Example: ultrafiltration in the kidney.
- Discontinuous capillary:
- Large intercellular gaps and a discontinuous basement membrane.
- Free exchange of small and large molecules.
- Examples: liver and bone marrow.
Endothelial Cells
- Cells form the lining of blood vessels and a monolayer with tight junctions, which is a selective barrier between the blood and tissue and anti-coagulant surface
- Play a role in vasodilation, vasoconstriction, mechanosensory, angiogenesis and vasculogenesis
- HUVECs easy to use in the lab and proliferate quickly
Mural Cells
- Mural cells, support vascular system with smooth muscle cells and pericytes, which provides structural stability and vasodilation/vasoconstriction
- Contribute to vasodilation and vasoconstriction, play a role in blood pressure, involved in vascular remodeling and ECM responsible for production in blood vessels
Angiogenesis
-
Angiogenesis= capillary sprouting from pre-existing vasculature which is triggered by hypoxia
-
Remodeling of primitive plexus to a capillary bed with:
- High oxygen = low HIF. Low oxygen = high HIF -> VEGF -> formation of tip cells navigate though ECM towards angiogenixc stimulus (VEGFD) and Tip cells will be stalk cells -> from blood vessel.
-
Maturation and remodeling by Pruning, remodeling, stabilisation by SMCs:
- Driven by shear stress and Receptor/ligand driven
-
Mechanisms that constirbute to vascular remodeling by Fusion, Introsusception, Sprouting, and Regression
Vascular Progenitor Cells
- 4 types vascular stem cells with varying success of isolation, lack of unique markers, influence of pre-existing disease in fucntiong?
Challenges for use of stem cells for the regeneration of vasculature:
- Lack of unique markers making isolation difficult and vary success of culturing & influence of pre-existing disease on functioning? autologous possible in sick people
Making Regenerative Vascular Replacement
- Engineer a blood vessel on its own and put blood vessels into an organ or tissue.
-3 main approaches for vascular engineering:
- In vitro paradigm using bioreactor culturing and variation on maturation: most laboursome , but best clinically.
- Autologous graft harversting using the in vivo method: dececularized structure to implant + cells . - In situ TE uses the regenerative potential of the body : use scaffold and directly implant= least laboursome + scaffold breakdown
Paracrine Hypothesis
- Stem cells secrete factors to damaged tissue: secrete facters and anti-inflammatory cytokines to help
- Cells themselves maybe not needed - it is form immune therapy maybe, so becaus of paracine signalling
Current Approaches to Heal Injured Vasculature
- Coronary Artery Bypass Grafting procedure invasive Vascular Access Graft
- Autologous vessel is choose for upper leg put in heart= internal throacic artery or saphenous vein, however are often not avaible in old people or made accessible for patients
- Synthetic in CABG is not available by nothing sticks, no trombosis, but also no cells + Patency: open of graft is very low.
What We Want in New Approach Healing Vasculature
- Small diameter targeted vasculature
- Patient specific diameter
- Immediate use and high primary patency
- Low thrombogenicity to be infection resistent which supports a long lifespan
- Long and difficult list and is needed for vascular tissue engineering
- Goals is to assemble functional construct that restore, maintain or imporve damaged tissues or whole organs
In Vitro Approach for Vascular Tissue Engineering
- Paradigm using bioreactor culturing and variation on maturation
- Harvest cells, cell expansion, scaffold creation and cell seeding onto the scaffold by the bioreactor cultivation, and if allogeneic then the decellularization will occour before the implantation.
- Company Example:
- Already in phase III trial. Humacyte uses donors to isolate smooth muscle cells and bioreactor for 8 weeks+ prolferating of cells and making of ECM to have white blood vessel structure: trasnplant
- AV graft is used and no immune rejection occurs,also for trauma and vascular excess for hemodialysis
- Pros+cons: immediate functioning and regulated/controlled through tria, however can be structually damaging:
- (Cell source needed: Progenitor cells? Where can you find them? How do you isolate them? Not off the shelfand Hands on- labor intensive steps)
In Vivo Approach for Vascular Tissue Engineering
- Is biodegradable for vascular grafts
- Mold is created fabricated the implanted of scaffold to grow the vessel. To used the body as bioreactor to exlant (take out) vessel to than deceullarize and implant which leads to remodeling.
= Scar like structure with lumen used as vessel due to autologous structure and No endothelial cells
- Implant under skin: luminized structure of collagen.
- No functional tests.
PROS-CONS
- Autologous possibilities with using bodies regenerative however,requires regenerative time, not every step can be controlled and is not off the shelve, and 2 surgeries needed for the mold
In Situ Approach for Vascular Tissue Engineering
- Implant of a scaffold slowly is slowly to induced angiogenesis
- Immune driven regeneration in wound healing: scaffold needs to adhere and allow bloodflow and withstand pressure and be removed
Scaffold is to have a aligned timed degradation or tissue formation, so timing is key for succes
- no cell cultivation, can be manipulated and 1 surgery with is off the shelve
- Biodegration and angiogenesis is needed and be on the bodys regenrative
General Factors That Can Influence Functional Tissue Outcome (Which VTE)
- Scaffold properties and patients unique inherit factors
- Inherited factors can also be depended for the race and anatomical location
General Questions When Designing Your Own Scaffold
- Applicaiton?
- Disease context?
- Apporach?
- Readout?
- Tissue to created with the body?
Paracrine Signaling
- Secreted molecules diffuse locally and trigger a response in neighboring cells(more integrines)
Stem cell goes damages tissue and can secrete all kind of factors and regenration is stimulated from anti-inflammatory cytokines and Stem cel is gone again
Extracellular Vescicles
- Exosomes: Cytoplasm from vesicles secreted from multivesicular body + escort proteins involved in cargo selection and budding with the smallest vesicles inside
- microvesciles come derviced from Cytoskeletion (disrupted with snare proteins and content lipids, protein, Rna ect)
- apoptotic bodies come when cells a dying,and oncosomes from cancer cells
Paracrine Signaling
- Paracrine signalling is a form of communication to trigger response and change cells
- Damaged tissue: Stem cell heals to land through factors -
Research: fractionated medium with molecules, and spectrometry + extra cellular vesicles
Making of Exosomes
- Budding of. Intraluminar vesicles with proteins environment
Making of Microvesicles
- Exocytoskeleten
Content of EVs
- Protein, miRNA, mRNA, metabolites, membrane proteins, lipids - membranes
Filtering Vesciles Out of Cells
-spin down cells - apoptotic and micro vesicles removal -then Isolate with 10K and Exosomes with then in Pellet
Functions of EVs
-Ligand-receptor interaction + Downstream signaling through Direct fusion + Accumulation of vesicles or transcytosis in intersines
Clinical Application of Exosomes
- No cells and cancerous used
MSC exosome: Organs and Tissue. Lots of pepers vs models -> kidney -> translator
Comparing MSCs vs EVs
EV have different procedures for cells. EV productions is limited Regulations and dificulities store Dosing
Setting Up Experiment With EVs
First look at quality EV + characteristics and apply for EV.EV distributions ( kidney liver) injury with Organ interactions 1.Quality stems 2.Check the character. 3.Combine orgs
Pancreas
- 99% digestive 1 % hormones ( alpha beta ( glucose)). 1 billion cells
Diabetes
Decrease in beta cells types Type 2 from age 2/3 Type 1 immune system and young
Treatment Type 1 Diabetes
Glucose devices and insuline
Pancreas Transplantation
High risks -> also affect kidneys Transplanation is functional 1/3 organ donor Not a choice
Islet Transplantation
- Risk, complications, etc, less cuering rate than a severe diabetes and HLA sensitizations
Main 2 Downsides of Organ Transplantation
- Limited supply and lifelong supresion
Use of Adult Stem Cells Diabetes
Neogenesis, Injection into kidney of mice
Use of Pluripotent Cells Diabetes
Show c -petide by v12, is maturation which can Mimic -disease modelling,optimization VX needs mature longer
Overcome Need for Immune Supression When Using Stem Cells
- The solution seems to be the use of pluripotent stem cells Device -> implant
EUSTM
- time and cost
- TM Bench Benchside Timewlse
Translational Medicine
- Combined -> Bench bedside - close model costs money. 1000 will ->
Translational Cardiac RM
- Preclinical research and cardiac
How Improve Quality of Pre-Clinical Research
Models need to improve
Optimizing Large Animal Models
- Meta analzye to show and know
Retention of BM-MSC in Chronic MI (Myocardial Infarction) in Pigs
- No significant difference in retention for different delivery routes. Less invasive route therefore advisable.
Growth Factor + Hydrogel: Pig Study Cardiac
- Injected via cathethers to target specific area. Gel solidifies after injection and provides controlled prolonged release and availablility of growth factors. Prevent off-target effects and limit wash out.
Tissue Engineering Pig Study Cardiac
Injection of shape-memory engineerd
Gene Therapy Pig Study Cardiac
- PLN -> models and deliver
autotransformation -> Moon Shot ( take heart of patient and back) Healthy and do bio
Pig Studies Examples (4) (Onderzoeksrichtingen)
BM-MSC and 4) Tissue
.
Large Models Advantages and Disadvantages
- Advantages and disadvatges of pysholgy and disease Pig = promising + translate
- Costs
.
Myocardial Infarction
Cell do not -> fribotics Theapy will heal
.
Cardiac Regenerative Medicinal Products Generations
regenration effectes
.
Use of Cardiac Progenitor Cells
Lab -> animal = pump
.
Use of Microtissues for Cardiac Regeneration
Higher signal in microsheres and VASC
.
Use of 3D Printing for Biocomplexes (Cardiac Regenration)
High survival
.
Use of iPSC Cells Un Cardiac Regeneration
Washout but safety issue Direct inject +add
.
Cardiac Patch Made of a Hydrogel (Collagen) and iPSC-CMs
Challneges:Tissue and Myo
.
Cardiac Tissue Engineered Patches 3D Printing
Inprove for.
Add. Laser vascular
Role Fibroblasts Iin Combination with iPSC-CMs
iSP -> denser
.
Hypoimmunogenic iPSCs
- Hypoimmucene ->
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