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Questions and Answers

Which gene sequence is specifically utilized for animal barcoding and plays a critical role in the electron transport chain?

  • cytochrome-b gene
  • COI gene (correct)
  • matK gene
  • rbcL gene
  • What is the primary function of the cytochrome-b gene in taxonomy?

  • Plant barcoding
  • Identification of genes in chloroplasts
  • Recovering phylogenetic relationships of closely-related taxa (correct)
  • Animal barcoding at deeper phylogenetic levels
  • Which gene is located in the chloroplast genome and is universal to all plants?

  • cytochrome-b gene
  • COI gene
  • matK gene
  • rbcL gene (correct)
  • What is meant by the term 'character state' in a taxonomic context?

    <p>The value of a character shared among taxa</p> Signup and view all the answers

    What does phylogenetic bracketing allow scientists to predict?

    <p>Features shared by closely related groups</p> Signup and view all the answers

    What is a character in the context of taxonomic units?

    <p>An observable feature or trait of an organism</p> Signup and view all the answers

    Which statement best describes homologous features?

    <p>They share common ancestry despite differing appearances.</p> Signup and view all the answers

    How can one distinguish homologies from analogies in morphological data?

    <p>Through the number of similar structural elements.</p> Signup and view all the answers

    What does the term 'autapomorphy' refer to?

    <p>A unique trait or character state specific to one lineage</p> Signup and view all the answers

    What is the character state of the character 'shell' typically analyzed in a cladogram?

    <p>Presence or Absence</p> Signup and view all the answers

    Which molecular source is commonly used for phylogenetic studies apart from rRNA?

    <p>Cytocrome c oxidase I (COI) gene</p> Signup and view all the answers

    What is the synapomorphy of two organisms in a cladogram?

    <p>A trait that is shared and derived from a common ancestor</p> Signup and view all the answers

    In the context of cladograms, what does the term 'basal taxon' refer to?

    <p>The lineage that diverged early from the common ancestor</p> Signup and view all the answers

    Study Notes

    Morphological Data

    • Homologies vs. Analogies
      • Homologous features share common ancestry
      • Analogous features share similar function, but not common ancestry
      • Distinguishing: By comparing fossil evidence and the degree of complexity. The more complex the structure, the more likely it is homologous
    • Character and Character State: Character is a defining feature of a taxonomic unit. Character state is the value of the character. For example, the character "hair" has the character states "present" or "absent".

    Molecular Data

    • Sources of molecular data:
      • rRNA: Ribosomal ribonucleic acid, used in molecular phylogeny.
      • Cytochrome c oxidase I (COI): Used for animal barcoding, plays a role in electron transport chain in animals.
      • Cytochrome-b gene: Also used for animal barcoding, helpful for closely related taxa, lacks resolution for deeper relationships.
      • rbcL gene: Located in chloroplast, universal to all plants, used for plant barcoding.
      • matK gene: Located within the chloroplast genome, also used for plant barcoding.

    Inferring Evolutionary History and Relationships of Organisms

    • Phylogenies as hypotheses: Phylogenies represent hypotheses about evolutionary relationships.
    • Predictions based on phylogenies: Phylogenies allow us to make and test predictions about the evolution of traits.
    • Phylogenetic bracketing: Predicting shared features of two groups of closely related organisms based on their common ancestor.

    Data Types

    • Characters: Features used to construct a phylogeny.
    • Character states: Values of the character, used to compare between taxa.
    • Distances: Quantitative measures of dissimilarity, used to compare genetic sequences.

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