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Virology Lecture 2: Virus Classification and Replication

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40 Questions

Virus attachment is the binding of the virus to the host ______.

cell

Rhinovirus binds a protein known as ______ 1 (ICAM-1).

intercellular adhesion molecule

Influenza A virus strains bind to the ______ acid sugars found at the ends of cellular carbohydrate chains.

sialic

HIV initially binds to a protein known as ______ on the surface of T lymphocytes with one of two coreceptor proteins.

CD4

The Baltimore classification system categorizes viruses based on the type of ______ acid genome and replication strategy of the virus.

nucleic

Poliovirus binds to the ______ receptor (PVR) CD155.

poliovirus

Measles virus binds to ______, CD150.

CD46

Positive-strand RNA is able to be immediately translated into ______.

proteins

Dengue virus binds to ______.

DC-SIGN

Viruses are only classified using ______, family, genus, and species.

order

The ______ of a virus is generally the “common name” of the virus.

species

Most types of viruses use ______-mediated endocytosis to enter the cell.

clathrin

The suffix -virales is used in the ______ of viruses.

order

Negative-strand RNA is not translatable into ______; it first has to be transcribed into positive-strand RNA.

proteins

The genus of a virus ends in the suffix -______.

virus

The family of a virus ends in the suffix -______.

viridae

The virus's genome acts as the instructions for the synthesis of virus ______.

proteins

The replication strategy of a virus is generally dependent upon the type of ______ acid genome it contains.

nucleic

Viruses with ______ genomes have similar nucleic acid to living organisms and often use the enzymes and proteins that the cell normally uses.

dsDNA

The Baltimore classification system categorizes the viruses into seven classes based upon their type of ______.

genome

The ______ polymerases are used by viruses with dsDNA genomes.

DNA

The ______ viruses are classified into Class I according to the Baltimore classification system.

dsDNA

The ______ viruses are classified into Class IV according to the Baltimore classification system.

+ssRNA

The ______ virus is an example of a virus that reverse transcribes.

HIV-1

So all dsDNA viruses that infect humans enter the nucleus of the cell, while ______ genomes do not.

RNA

During replication, the ssDNA genome enters the nucleus of the host cell, where the ssDNA is converted to dsDNA by ______ polymerase.

DNA

DsRNA viruses contain an ______ that is carried into the cell within the virion.

RdRp

The genomes of +ssRNA viruses are infectious, since positive-sense RNA is able to be directly translated by ______.

ribosomes

−ssRNA viruses are not infectious and must be transcribed into ______ before translation can occur.

vmRNA

Retroviruses are viruses that reverse transcribe an RNA genome into ______.

cDNA

RNA polymerase II transcribes an RNA pregenome that is reverse transcribed, after being packaged into the capsid, into the rcDNA genome in the ______ of the cell.

nucleus

New strains of virus can occur when two different strains infect one ______.

cell

Recombination occurs when the genome of an RNA virus is being replicated and the RdRp jumps from the template of one strain to the template of the other strain, creating a hybrid ______.

genome

Reassortment occurs when the genome segments of ______ viruses are mixed while being packaged into new capsids.

segmented

Viruses components must be collected at a particular site of the cell and undergo assembly to form an immature ______ particle.

virus

Most nonenveloped DNA viruses assemble their nucleocapsid in the ______, since that is the site of genome replication.

nucleus

Viruses with envelopes derived from the plasma membrane usually assemble at the ______.

plasma membrane

Maturation refers to the final changes within an immature ______.

virion

The HA1 portion binds the cell surface ______, the HA2 portion is what fuses the viral envelope to the endosomal membrane to release the virus into the cytoplasm.

receptor

Nonenveloped viruses can also exit the cell via ______.

exocytosis

Study Notes

Virus Classification and Taxonomy

  • The Baltimore classification system categorizes viruses based on the type of nucleic acid genome and replication strategy.
  • The system categorizes viruses into seven classes based on their type of genome:
    • Class I: Double-stranded DNA (dsDNA) viruses
    • Class II: Single-stranded DNA (ssDNA) viruses
    • Class III: Double-stranded RNA (dsRNA) viruses
    • Class IV: Positive-sense RNA viruses
    • Class V: Negative-sense RNA viruses
    • Class VI: RNA viruses that reverse transcribe
    • Class VII: DNA viruses that reverse transcribe
  • Viruses are classified using order, family, genus, and species.
  • The classification system uses suffixes to distinguish between different taxonomic levels:
    • Order: -virales suffix
    • Family: -viridae suffix
    • Genus: -virus suffix
    • Species: generally the "common name" of the virus

Virus Attachment

  • Virus attachment refers to the binding of the virus to the host cell.
  • The interaction is specific, with the virus containing a virus attachment protein that adsorbs to a cell surface receptor on the cell.
  • Examples of virus attachment include:
    • Rhinovirus binding to intercellular adhesion molecule 1 (ICAM-1)
    • Influenza A virus binding to sialic acid sugars
    • HIV binding to CD4 and coreceptors CCR5 and CXCR4

Virus Replication

  • The replication strategy of a virus is dependent on the type of nucleic acid genome it contains.
  • Viruses with dsDNA genomes use the enzymes and proteins of the host cell, including DNA polymerases and RNA polymerases.
  • RNA genomes do not enter the nucleus and use different replication strategies.
  • The replication process involves the synthesis of viral proteins and the replication of the viral genome.

Virus Penetration

  • Penetration refers to the crossing of the plasma membrane by the virus, following attachment.
  • Enveloped and nonenveloped viruses use different penetration strategies.
  • Examples of penetration strategies include:
    • Receptor-mediated endocytosis
    • Clathrin-mediated endocytosis
    • Caveolae-mediated endocytosis
    • Bulk-phase endocytosis

Virus Assembly

  • Assembly refers to the collection of viral components at a specific site in the cell and the formation of an immature virus particle.
  • The assembly site can be in the nucleus, at the plasma membrane, or at intracellular membranes.
  • Examples of assembly sites include:
    • The nucleus for nonenveloped DNA viruses
    • The plasma membrane for enveloped viruses

Virus Maturation

  • Maturation refers to the final changes within an immature virion.
  • Structural capsid changes are often involved, such as the cleavage of the influenza HA protein into two portions.

Virus Release

  • Release refers to the final step in the virus life cycle, where the virus exits the cell.
  • Enveloped viruses can bud from the plasma membrane or other membrane systems, undergo exocytosis, and exit the cell.
  • Nonenveloped viruses can exit the cell via exocytosis or cause the lysis of the cell.

This quiz covers the classification and replication of viruses, including the Baltimore classification system and the characteristics of positive-strand RNA.

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