Thermodynamics: Zeroth & First Law

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Questions and Answers

How would you classify a mutation that neither harms nor benefits an organism?

  • Conditional
  • Deleterious
  • Beneficial
  • Silent (correct)

What is the outcome of transformation in prokaryotes?

  • The exchange of genetic information between homologous chromosomes.
  • The transfer of genetic material requiring cell-to-cell contact.
  • The direct uptake of genetic material from the environment by a cell. (correct)
  • The transfer of DNA from one bacterium to another via a bacteriophage.

If a bacterial cell is described as 'competent', what does this imply regarding horizontal gene transfer?

  • It can be easily infected by bacteriophages.
  • It is more susceptible to mutations.
  • It is capable of taking up DNA from its environment. (correct)
  • It can conjugate with other cells more efficiently.

Which repair mechanism is often the last resort when DNA damage is extensive?

<p>SOS response (D)</p> Signup and view all the answers

How do regulatory RNAs interact with mRNA to control gene expression?

<p>They bind complementary mRNA and inhibit its translation (C)</p> Signup and view all the answers

Which event activates the lac operon?

<p>Deactivation of a repressor molecule (C)</p> Signup and view all the answers

How would the presence of both high glucose and high lactose affect the lac operon in E. coli?

<p>The lac operon would be turned off. (D)</p> Signup and view all the answers

In the context of the trp operon, what occurs when tryptophan levels within the cell are high?

<p>The trp operon is repressed to halt tryptophan synthesis. (A)</p> Signup and view all the answers

What characteristic defines transposons?

<p>They are segments of DNA that can move from one location to another in the genome. (B)</p> Signup and view all the answers

What role do nucleotide analogs play in mutagenesis?

<p>They disrupt DNA and RNA replication. (A)</p> Signup and view all the answers

Flashcards

Mutagens

Agents that can cause mutations, such as radiation and certain chemicals.

Recombinants

Cells with DNA molecules that contain new nucleotide sequences.

Transformation

One of the three types of horizontal gene transfer among prokaryotes, in which a donor cell contributes part of its genome to a recipient cell.

Transduction

One of the three types of horizontal gene transfer among prokaryotes, in which a bacteriophage transfers DNA from one bacterium to another

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Operon

An operon consists of a promoter and a series of genes, controlled by a regulatory element called an operator.

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Inducible operons

Must be activated by inducers.

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Repressible operons

Are transcribed continually until deactivated by repressors.

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Lac operon

The lac operon in E. coli is the first operon whose function was elucidated, containing genes important for lactose catabolism.

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Trp operon

The Trp operon is important for the expression of genes involved in the synthesis of tryptophan, an amino acid.

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Transposons

Segments of DNA that move from one location to another in the same or different molecule.

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Study Notes

Thermodynamics

  • Focuses on heat transfer and related phenomena.
  • Concentrates on both thermal equilibrium and heat transfer.

Zeroth Law of Thermodynamics

  • If objects A and B are separately in thermal equilibrium with object C, A and B are in thermal equilibrium with each other.

First Law of Thermodynamics

  • Internal Energy (U) is the energy associated with the microscopic components of a system, including the kinetic and potential energy of atoms and molecules.
  • Only changes in internal energy are relevant.
  • Internal Energy is a state variable that depends only on the state of the system, not the path taken to get there.
  • U is therefore, path independent.
  • Heat (Q) is the transfer of energy across a system's boundary due to a temperature difference between the system and surroundings; its units are in Joules (J).
  • Heat is positive when energy enters the system and negative when energy exits the system.
  • Work (W) is the transfer of energy when a force displaces a particle
  • A quasi-static process occurs slowly enough for the system to remain in internal equilibrium.
  • $dW=F \cdot dr=PAdx=PdV$
  • $W = \int_{i}^{f}PdV$
  • Units are in Joules (J).
  • Work is positive when energy is transferred out of the system, and negative when energy is transferred into the system.
  • The change in a system's internal energy is equal to the heat added to the system minus the work done by the system: $\Delta U = Q - W$ or $dU = dQ - dW$.

Types of Thermodynamic Processes

  • Adiabatic processes involve no heat transfer $(Q = 0)$, so $\Delta U = -W$.
  • Isobaric processes occur at constant pressure, with $W = P(V_{f} - V_{i})$.
  • Isovolumetric processes occur at constant volume, meaning $W = 0$ and $\Delta U = Q$.
  • Isothermal processes occur at constant temperature, meaning $\Delta U = 0$ and $Q = W$; for an ideal gas: $W = n R T \ln\left(\frac{V_{f}}{V_{i}}\right)$.

Heat Engines and the Second Law of Thermodynamics

  • Heat engines convert thermal energy into other forms of energy, taking in energy by heat and partially converting it, usually in a cyclic process.
  • Second Law of Thermodynamics: No heat engine can convert energy from heat into mechanical work with 100% efficiency
  • Efficiency of a heat engine is defined as: $e = \frac{W_{\text{net}}}{Q_{h}} = 1 - \frac{Q_{c}}{Q_{h}}$ where $Q_{h}$ is the energy taken in from the hot reservoir and $Q_{c}$ is energy expelled to the cold reservoir.

Carnot Engine

  • Carnot Engine: The most efficient heat engine possible.
  • $e_{c} = 1 - \frac{T_{c}}{T_{h}}$
  • All real engines are less efficient than a Carnot engine.
  • Carnot Cycle stages:
    • Isothermal Expansion
    • Adiabatic Expansion
    • Isothermal Compression
    • Adiabatic Compression

Entropy

  • Entropy measures the disorder of a system; higher disorder corresponds to higher entropy.
  • Entropy is a state variable.
  • S is path independent.

Change in Entropy Formula

  • Change in entropy is equal to the heat added to the system divided by the temperature: $\Delta S = \int_{i}^{f} \frac{dQ}{T}$. For a reversible process: $\Delta S = \frac{Q}{T}$.
  • Units: J/K

Second Law of Thermodynamics (Entropy)

  • Entropy: the total entropy of an isolated system always increases in time.
  • Approximated in reality by the Universe.
  • $\Delta S_{\text{universe}} \geq 0$ The entropy of the Universe is always increasing!
  • Processes that decrease entropy are not spontaneous.
  • Entropy can decrease locally, but must increase elsewhere by at least as much.
  • The Second Law of Thermodynamics explains the "arrow of time".
  • The Universe was more ordered in the past.
  • Probability of a system being disordered is higher than the probability of it being ordered.
  • Entropy is related to probability.

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