Phylogeny and Systematics

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Questions and Answers

Which of the following best describes a phylogenetic tree?

  • A list of all known species on Earth.
  • A classification system based on physical characteristics only.
  • A diagram that shows the evolutionary relationships among organisms. (correct)
  • A method for identifying new species.

Systematics is primarily concerned with describing and naming new species, rather than inferring their evolutionary relationships.

False (B)

What type of data is least useful when employing the analytical approach to classify organisms?

emotional

The evolutionary history of a species or group of species is called ______.

<p>phylogeny</p> Signup and view all the answers

Match the following taxonomic ranks with their correct order from broadest to most specific:

<p>Domain = Broadest category of classification Kingdom = Second broadest category Phylum = A group of classes with similar characteristics Class = A group of orders with common characteristics</p> Signup and view all the answers

Why are sedimentary rocks typically the richest source of fossils?

<p>They are formed from layers of sediment, allowing for the sequential preservation of organisms over time. (B)</p> Signup and view all the answers

Morphological analysis always provides a clear and accurate depiction of evolutionary relationships without the potential for misleading information.

<p>False (B)</p> Signup and view all the answers

Why is it important to consider analogous structures when conducting a morphological analysis for phylogenetic purposes?

<p>They do not arise from common ancestry</p> Signup and view all the answers

The term for when organisms share similar morphologies or DNA sequences, suggesting they are closely related, is ______ analysis.

<p>morphological</p> Signup and view all the answers

Match the example with the kind of structure analysis in evolutionary biology

<p>bat wing and bird wing = analogous structure organisms that share similar DNA sequences = molecular analysis</p> Signup and view all the answers

In molecular analysis, what does aligning comparable regions of DNA sequences between different species help to identify?

<p>Areas of sequence similarity and difference that indicate evolutionary relationships. (C)</p> Signup and view all the answers

If two species are distantly related, their DNA sequences will likely show very few differences across many sites and lengths.

<p>False (B)</p> Signup and view all the answers

What percentage of base sharing is tested via statistical tools?

<p>25%</p> Signup and view all the answers

The use of molecular systematics to determine evolutionary relationships involves aligning comparable regions and sequencing species to identify regions with ______ bases.

<p>different</p> Signup and view all the answers

Match the following molecular analysis with identifying if species are related

<p>insertion = species had a common ancestor deletion = species had a common ancestor</p> Signup and view all the answers

In a branching phylogenetic tree, what does each branch point represent?

<p>The divergence of two evolutionary lineages from a common ancestor. (A)</p> Signup and view all the answers

Deeper branch points on a phylogenetic tree indicate less divergence and a more recent common ancestor compared to shallower branch points.

<p>False (B)</p> Signup and view all the answers

What does the branch point represent?

<p>where lineages diverge</p> Signup and view all the answers

The common ancestor of taxa is represented by each ______.

<p>branch point</p> Signup and view all the answers

Match the type of clade with the definition.

<p>monophyletic group = an ancestral species and all its descendants paraphyletic group = includes an ancestor and some of its descendants but not all of them polyphyletic group = includes numerous types of organisms that lack a common ancestor</p> Signup and view all the answers

In cladistics, what is a shared derived character?

<p>A trait that is unique to a particular clade and not found in its ancestors. (A)</p> Signup and view all the answers

Shared ancestral characters are evolutionary novelties unique to a particular clade.

<p>False (B)</p> Signup and view all the answers

What is a character that originated in the ancestor of the taxon?

<p>shared ancestral characteristics</p> Signup and view all the answers

An evolutionary novelty unique to a particular clade is called a shared ______ characteristic.

<p>derived</p> Signup and view all the answers

Which of the following is one of the three domains in the modern tree of life?

<p>Archaea (C)</p> Signup and view all the answers

Flashcards

Phylogeny

Evolutionary history of a species or group of species, sorted by common ancestry and using fossil record and systematics.

Systematics

Analytical approach to classifying organisms based on morphological, biochemical, and molecular data to infer evolutionary relationships.

Sedimentary rocks

Rocks formed from accumulated sediments; richest source of fossils and deposited into layers called strata.

Morphological analysis

Analysis that looks at the forms and structures of organisms to determine relationships; organisms with similar morphologies or DNA are more related.

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Molecular analysis

Using molecular data to determine evolutionary relationships by sequencing species and aligning comparable regions; examining DNA.

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Taxonomy

Ordered division of organisms into categories based on a set of characteristics; an example would the scientific name 'Genus species'.

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Branch points

Point on a phylogenetic tree representing the divergence of two evolutionary lineages from a common ancestor.

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Clade

A group of species that includes an ancestral species and all its descendants.

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Monophyletic clade

A valid clade consists of an ancestral species and all its descendants

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Paraphyletic clade

Includes ancestor and some of its descendants but not all descendants.

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Polyphyletic clade

Includes numerous types of organisms that lack a common ancestor.

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Shared ancestral characteristics

Character that originated in an ancestor of the taxon.

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Shared derived characteristics

An evolutionary novelty unique to a particular clade. E.g., vertebrae are not unique to mammals, but hair is.

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Branch lengths

A representation of time or genetic change; must be explicitly stated.

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Domains of Life

Three broad categories used to classify life: Archaea, Bacteria, and Eukarya.

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Study Notes

Phylogeny and Systematics

  • Phylogeny is the evolutionary history of a species or a group.
  • Phylogeny is sorted by common ancestry using the fossil record and systematics.
  • Systematics is an analytical approach to classifying organisms.
  • Systematics uses morphological, biochemical, and molecular data to infer evolutionary relationships.

Analysis Tools: Fossil Record

  • The fossil record involves sedimentary rocks, which are the richest source of fossils.
  • Sedimentary rocks are deposited into layers called strata.
  • The fossil record can be used for relative dating.

Analysis Tools: Morphological Analysis

  • Morphological analysis involves organisms that share similar morphologies or DNA sequences, and are likely more closely related.
  • It is important to be careful of analogous structures due to convergent evolution, where organisms might not share a common ancestor.
  • eg, the Australian mole and the North American mole.
  • eg, bat wings and bird wings.

Analysis Tools: Molecular Analysis

  • Molecular analysis uses molecular systematics to determine evolutionary relationships.
  • Molecular systematics involves sequencing species and aligning comparable regions.
  • If species are distantly related, there will be different bases at many sites and different lengths.
  • Statistical tools are used to test if sequences share >25% of bases.

Homologous Structures

  • Animals that possess homologous structures likely evolved from the same ancestor.

Taxonomy

  • Taxonomy is the ordered division of organisms into categories.
  • Taxonomy is based on a set of characteristics.
  • A scientific name includes the genus and species.

Linking Classification and Phylogeny

  • Systematics depict evolutionary relationships.
  • This is done via branching phylogenetic trees.

Branch Points

  • Branch points represent the divergence of two evolutionary lineages from a common ancestor.
  • "Deeper" branch points represent progressively greater amounts of divergence.

Cladistics

  • Cladistics studies resemblances among clades.
  • A clade is a group of species including an ancestral species and all descendants.
  • A valid clade is monophyletic and consists of an ancestor species and all its descendants.
  • A paraphyletic clade includes an ancestor and some, but not all, of its descendants (lacking a descendant).
  • A polyphyletic clade includes numerous types of organisms that lack a common ancestor.

Shared Characteristics

  • Shared ancestral characteristics originated in an ancestor of the taxon.
  • Shared derived characteristics are an evolutionary novelty unique to a particular clade.
  • Vertebrae are not unique to mammals, but hair is (therefore hair is unique to mammals).

Branch Lengths

  • Branch lengths can represent time or genetic change, which must be stated.

Tree of Life

  • The 'old' system had five kingdoms: Monera, Protista, Plantae, Fungi, and Animalia.
  • The current system uses three domains: Archaea, Bacteria, and Eukarya.
  • The three domain system has replaced the five kingdom system.
  • Each domain is split into many kingdoms.
  • The tree of life is divided into three great clades called domains: Bacteria, Archaea, and Eukarya.
  • The early history of the three domains is not yet clear.
  • A ring may be a better representation of the early tree of life.

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