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Questions and Answers
In biomedical research, when analyzing the relationship between two categorical variables, the predictor variable (X-axis) influences the subjects by:
In biomedical research, when analyzing the relationship between two categorical variables, the predictor variable (X-axis) influences the subjects by:
Contingency tables are used to display results of analyses involving a continuous variable on the Y axis and a categorical variable on the X axis.
Contingency tables are used to display results of analyses involving a continuous variable on the Y axis and a categorical variable on the X axis.
False (B)
If you are analyzing the relationship between adding sugar to coffee (yes/no) and energy levels (high/low), which statistical test is most appropriate?
If you are analyzing the relationship between adding sugar to coffee (yes/no) and energy levels (high/low), which statistical test is most appropriate?
Chi-squared test
When assessing how gender influences the likelihood of having an HIV test, the results are typically displayed in a __________ table.
When assessing how gender influences the likelihood of having an HIV test, the results are typically displayed in a __________ table.
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Match each statistical test with its appropriate variable types:
Match each statistical test with its appropriate variable types:
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In a Chi-squared test, what does the CHISQ.TEST
function in Excel return?
In a Chi-squared test, what does the CHISQ.TEST
function in Excel return?
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In a Chi-squared test performed in Excel, the observed data should be specified as the second argument in the CHISQ.TEST
function.
In a Chi-squared test performed in Excel, the observed data should be specified as the second argument in the CHISQ.TEST
function.
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When calculating the expected value for a cell in a Chi-squared test, what formula is used?
When calculating the expected value for a cell in a Chi-squared test, what formula is used?
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In a Chi-squared test, if the p-value is less than the significance level, we ______ the null hypothesis.
In a Chi-squared test, if the p-value is less than the significance level, we ______ the null hypothesis.
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Match the terms with their descriptions in the context of a Chi-squared test:
Match the terms with their descriptions in the context of a Chi-squared test:
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Fisher's exact test is frequently used in biomedicine due to the typically large sample sizes encountered.
Fisher's exact test is frequently used in biomedicine due to the typically large sample sizes encountered.
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When should Fisher's exact test be used instead of the Chi-squared test?
When should Fisher's exact test be used instead of the Chi-squared test?
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If a researcher wants to determine if there's a statistically significant association between different drug dosages and disease recovery using a contingency table, but only wants an overall significance, which statistical tests can be used?
If a researcher wants to determine if there's a statistically significant association between different drug dosages and disease recovery using a contingency table, but only wants an overall significance, which statistical tests can be used?
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For contingency tables larger than 2x2, the Chi-squared test or Fisher's exact test will indicate if at least ______ condition is significant, but not the specific condition.
For contingency tables larger than 2x2, the Chi-squared test or Fisher's exact test will indicate if at least ______ condition is significant, but not the specific condition.
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Which software packages are suitable for performing Fisher's exact test when Excel lacks the functionality?
Which software packages are suitable for performing Fisher's exact test when Excel lacks the functionality?
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A statistically significant result from a Chi-squared test on a larger contingency table (e.g., 4x2) pinpoints exactly which conditions are significantly different from each other. In other words, the test identifies WHICH specific conditions stick out.
A statistically significant result from a Chi-squared test on a larger contingency table (e.g., 4x2) pinpoints exactly which conditions are significantly different from each other. In other words, the test identifies WHICH specific conditions stick out.
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Match the scenario with the appropriate condition for using Fisher's exact test:
Match the scenario with the appropriate condition for using Fisher's exact test:
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Consider a 2x2 contingency table. Which scenario necessitates the use of Fisher's exact test?
Consider a 2x2 contingency table. Which scenario necessitates the use of Fisher's exact test?
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If the 95% confidence interval (CI) for an Odds Ratio (OR) includes 1, what does this indicate?
If the 95% confidence interval (CI) for an Odds Ratio (OR) includes 1, what does this indicate?
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A log(OR) of 1 indicates there is 'no effect'.
A log(OR) of 1 indicates there is 'no effect'.
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What is the primary reason Fisher's exact test is used instead of Pearson's chi-squared test in certain situations?
What is the primary reason Fisher's exact test is used instead of Pearson's chi-squared test in certain situations?
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For Pearson's chi-squared test to be appropriate, the grand total of observations must exceed ______.
For Pearson's chi-squared test to be appropriate, the grand total of observations must exceed ______.
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What value represents 'no effect' when using Log(OR)?
What value represents 'no effect' when using Log(OR)?
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Why was the Chi-squared test developed?
Why was the Chi-squared test developed?
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Fisher’s exact test is an approximation, and the Chi-squared test provides the exact p-value.
Fisher’s exact test is an approximation, and the Chi-squared test provides the exact p-value.
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Under what condition should you not use the Chi-squared test and instead opt for Fisher's exact test?
Under what condition should you not use the Chi-squared test and instead opt for Fisher's exact test?
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In a Chi-squared test, what does an odds ratio greater than 1 suggest?
In a Chi-squared test, what does an odds ratio greater than 1 suggest?
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In an expected value table for a Chi-squared test, it is acceptable to have fractional values even if the observed data consists of whole numbers.
In an expected value table for a Chi-squared test, it is acceptable to have fractional values even if the observed data consists of whole numbers.
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What statistical software packages are mentioned as tools that eliminate the need to manually look up p-values from a Chi-squared distribution table?
What statistical software packages are mentioned as tools that eliminate the need to manually look up p-values from a Chi-squared distribution table?
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In the context of the provided example, the odds of passing the exam after having lunch are calculated as 35/15, which equals ______.
In the context of the provided example, the odds of passing the exam after having lunch are calculated as 35/15, which equals ______.
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If the odds of passing an exam after a meal are 2.3 and the odds of passing before a meal are 1.5, what is the odds ratio?
If the odds of passing an exam after a meal are 2.3 and the odds of passing before a meal are 1.5, what is the odds ratio?
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In a Chi-squared test, an odds ratio of exactly 1 between two variables indicates that there is a strong association between them.
In a Chi-squared test, an odds ratio of exactly 1 between two variables indicates that there is a strong association between them.
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In the context of a Chi-squared test, what is the purpose of creating an 'expected value table'?
In the context of a Chi-squared test, what is the purpose of creating an 'expected value table'?
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What does a Relative Risk (RR) of 1 indicate between two conditions?
What does a Relative Risk (RR) of 1 indicate between two conditions?
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The odds ratio (OR) is calculated by dividing the risk of an event in one group by the total number of events.
The odds ratio (OR) is calculated by dividing the risk of an event in one group by the total number of events.
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What is the purpose of using the Chi-squared test in the context of analyzing contingency tables?
What is the purpose of using the Chi-squared test in the context of analyzing contingency tables?
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In hypothesis testing, a p-value is used to determine the statistical ______ of an observed result.
In hypothesis testing, a p-value is used to determine the statistical ______ of an observed result.
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Match the statistical measure with its appropriate interpretation:
Match the statistical measure with its appropriate interpretation:
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Why is it important to test the odds ratio (OR) for significance?
Why is it important to test the odds ratio (OR) for significance?
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Expected values in a Chi-squared test represent the values you would expect to see if there is an effect.
Expected values in a Chi-squared test represent the values you would expect to see if there is an effect.
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In the context of the Chi-squared test, what do observed values represent?
In the context of the Chi-squared test, what do observed values represent?
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Karl Pearson, known for his work on the correlation coefficient, also developed the significance test for ______ tables.
Karl Pearson, known for his work on the correlation coefficient, also developed the significance test for ______ tables.
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How does the magnitude of the Chi-squared value relate to the significance of the difference between observed and expected values?
How does the magnitude of the Chi-squared value relate to the significance of the difference between observed and expected values?
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When is Fisher's Exact Test most appropriate compared to the Chi-Squared test?
When is Fisher's Exact Test most appropriate compared to the Chi-Squared test?
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A high p-value (e.g., above 0.05) indicates a statistically significant association between the variables being tested.
A high p-value (e.g., above 0.05) indicates a statistically significant association between the variables being tested.
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What distribution does Fisher’s Exact Test use to calculate probabilities, instead of approximating with a Chi-Squared distribution?
What distribution does Fisher’s Exact Test use to calculate probabilities, instead of approximating with a Chi-Squared distribution?
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Ideally, the expected counts in each cell for a Chi-Squared test should be ________ or more to ensure a good approximation.
Ideally, the expected counts in each cell for a Chi-Squared test should be ________ or more to ensure a good approximation.
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Match the statistical test with its appropriate condition for use:
Match the statistical test with its appropriate condition for use:
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Which of the following is a key assumption for the Chi-Squared test?
Which of the following is a key assumption for the Chi-Squared test?
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In a 2x2 contingency table, what does Fisher's Exact Test calculate?
In a 2x2 contingency table, what does Fisher's Exact Test calculate?
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In the context of hypothesis testing, what does a low Chi-Squared statistic, resulting in a high p-value, generally indicate?
In the context of hypothesis testing, what does a low Chi-Squared statistic, resulting in a high p-value, generally indicate?
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In a Chi-Squared test for a 2x2 table, what does the test primarily assess?
In a Chi-Squared test for a 2x2 table, what does the test primarily assess?
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The expected counts in a Chi-Squared test represent the values you would expect to see if there were a strong association between the variables.
The expected counts in a Chi-Squared test represent the values you would expect to see if there were a strong association between the variables.
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Write the formula to calculate the expected count for a cell in a Chi-Squared test.
Write the formula to calculate the expected count for a cell in a Chi-Squared test.
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In the Chi-Squared test calculation, the term (Observed - Expected)^2 / Expected
represents the contribution of each ______ to the overall Chi-Squared statistic.
In the Chi-Squared test calculation, the term (Observed - Expected)^2 / Expected
represents the contribution of each ______ to the overall Chi-Squared statistic.
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For a standard 2x2 contingency table, what is the degrees of freedom for the Chi-Squared test?
For a standard 2x2 contingency table, what is the degrees of freedom for the Chi-Squared test?
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A small p-value in a Chi-Squared test suggests there is a weak association between the categorical variables.
A small p-value in a Chi-Squared test suggests there is a weak association between the categorical variables.
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Given a 2x2 table where Group 1 total is 50, Category A total is 60, and the Grand Total is 100, what is the expected count for Group 1, Category A?
Given a 2x2 table where Group 1 total is 50, Category A total is 60, and the Grand Total is 100, what is the expected count for Group 1, Category A?
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Flashcards
T-test
T-test
A statistical test used for comparing means between two categories.
ANOVA
ANOVA
Analysis of Variance; a method for comparing three or more groups.
Chi-squared test
Chi-squared test
A statistical test to determine if there's a significant association between categorical variables.
Contingency table
Contingency table
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Odds Ratio
Odds Ratio
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Observed Values
Observed Values
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Expected Values
Expected Values
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CHISQ.TEST Function
CHISQ.TEST Function
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P-value Interpretation
P-value Interpretation
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Odds Ratio (OR)
Odds Ratio (OR)
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Expected Value Table
Expected Value Table
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Differences in Observed and Expected
Differences in Observed and Expected
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P-value
P-value
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c² Value
c² Value
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R and Excel
R and Excel
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Relative Risk (RR)
Relative Risk (RR)
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Absolute Risk
Absolute Risk
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Significance Test
Significance Test
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Chi Squared Test (c2)
Chi Squared Test (c2)
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Effect Size
Effect Size
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Odds of Lung Cancer
Odds of Lung Cancer
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Probability
Probability
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Confidence Intervals (CIs)
Confidence Intervals (CIs)
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OR (Odds Ratio)
OR (Odds Ratio)
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Significance of OR CI
Significance of OR CI
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Log(OR)
Log(OR)
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Significance of Log(OR) CI
Significance of Log(OR) CI
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Fisher's Exact Test
Fisher's Exact Test
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Chi-Squared Test vs. Fisher's Exact Test
Chi-Squared Test vs. Fisher's Exact Test
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Rules of Thumb for Chi-Squared Test
Rules of Thumb for Chi-Squared Test
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Grand Total Requirement
Grand Total Requirement
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Observation Limit
Observation Limit
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2x2 Contingency Table
2x2 Contingency Table
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Larger Contingency Tables
Larger Contingency Tables
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ANOVA Limitation
ANOVA Limitation
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High p-value
High p-value
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Independence Assumption
Independence Assumption
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Fisher’s Exact Test Purpose
Fisher’s Exact Test Purpose
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Hypergeometric Distribution
Hypergeometric Distribution
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Exact p-value
Exact p-value
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Use of Fisher’s Test
Use of Fisher’s Test
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Chi-Squared Test Validity
Chi-Squared Test Validity
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Comparison: Chi-Squared vs. Fisher’s
Comparison: Chi-Squared vs. Fisher’s
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Chi-Squared Test Purpose
Chi-Squared Test Purpose
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Expected Count Calculation
Expected Count Calculation
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Degrees of Freedom in Chi-Squared
Degrees of Freedom in Chi-Squared
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Chi-Squared Statistic Calculation
Chi-Squared Statistic Calculation
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Interpreting P-value
Interpreting P-value
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Fisher's Exact Test Usage
Fisher's Exact Test Usage
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2×2 Table Structure
2×2 Table Structure
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Chi-Squared Test Limitations
Chi-Squared Test Limitations
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Study Notes
Obesity Levels in Children
- Obesity levels have risen among Year 6 children in England
- Trend data show a gradual increase in obesity rates from 2006/07 to 2021/22.
Statistical Analysis
- Continuous vs. Categorical Variables: Different statistical tests are used depending on whether variables are continuous or categorized.
- T-test and ANOVA: Used when one variable is continuous and the other is categorized. The number of categories dictates which test to use (2 for t-test, 3 or more for ANOVA)
- Chi-squared and Fisher: Used when both variables are categorical
- Contingency Tables: Tables displaying results from categorical analysis. Gender and HIV test status is an example.
Contingency Tables - Details
- Contingency tables are used to display data from categorical variables
- The analysis shows if one variable or categorical condition affects the probability of another categorical variable.
Effect Size Metrics: What's Special?
- This case occurs often in biomedical research
- When one variable influences the categories of another variable (like drug dosages vs. disease recovery), several conditions may affect a single outcome.
Odds Ratio (OR) and Relative Risk (RR)
- Odds Ratio: The comparison of odds in two groups, useful to determine factors that influence an outcome
- Relative Risk: The ratio of risks between groups, also used to compare exposures and outcomes
- Importance: These metrics are used to determine factors influencing outcomes, like whether adding milk to coffee affects exam grades.
- Interpretation Key: A ratio of 1 indicates no influence. A ratio greater than 1 often indicates a positive influence from one of the variables.
- Log Odds ratio: This also represents "no effect" as 0. Important: the confidence interval for log(OR) also represents the no effect.
Chi-Squared Test
- Purpose: A statistical significance test for comparing categorical variables in a contingency table.
- Logic: Finds the difference between expected and observed values in a contingency table. A large difference suggests the variables are related.
- P-value: Provides level of significance
- How to Use the Test: This test is used to check if a condition influences an outcome, e.g., eating lunch before an exam.
- Expected Value Tables: Expected outcomes based on the null hypothesis (no effect).
Chi Squared Test - Excel
- Calculations are done in spreadsheet software (Excel, specifically in this presentation.)
Fisher's Exact Test
- Usefulness: Used for smaller sample sizes or when individual observations are less than 5, where chi-squared becomes less accurate.
- Details: A more exact method for contingency table analysis.
- Conditions for Chi-squared use:
- Overall sample size must exceed 50
- Individual observations must exceed 5
Summary
- Different types of tests are used for different types of variables (continuous and categorical).
- These statistical tests allow comparison of metrics (like Odds Ratio) and give significance through p-values and confidence intervals.
- Confidence intervals for Odds Ratios (or Log Odds ratio) are important in interpreting results; a CI that does not include 1 (or 0 for Log OR) suggests a significant result.
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Description
Obesity levels are rising among children. Statistical analysis methods like t-tests, ANOVA, Chi-squared, and Fisher's exact tests are used to analyze relationships between continuous and categorical variables. Contingency tables display results from categorical data analysis.