Nutritional Biochemistry Genetics Quiz
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Questions and Answers

What percentage of genes in the human genome is the same between humans?

  • 98.7%
  • 99.9% (correct)
  • 97.5%
  • 90.0%
  • Which part of a nucleotide is replaced by hydrogen in DNA's sugar?

  • 3ʹ carbon
  • 1ʹ carbon
  • 5ʹ carbon
  • 2ʹ carbon (correct)
  • Which type of bond exists between adenine and thymine in DNA?

  • 1 hydrogen bond
  • 3 hydrogen bonds
  • 4 hydrogen bonds
  • 2 hydrogen bonds (correct)
  • What is the structure of DNA best described as?

    <p>Double helix (C)</p> Signup and view all the answers

    What components form a nucleoside?

    <p>Sugar and base (D)</p> Signup and view all the answers

    How many steps per turn does the helical structure of DNA have?

    <p>10.5 steps (A)</p> Signup and view all the answers

    What type of molecules do polynucleotides form?

    <p>DNA (D)</p> Signup and view all the answers

    Which nucleotide base pairs with guanine?

    <p>Cytosine (A)</p> Signup and view all the answers

    What is the final step in the synthesis of the lagging strand during DNA replication?

    <p>Joining of Okazaki fragments (C)</p> Signup and view all the answers

    What type of bond forms between the 5ʹ phosphate of one nucleotide and the 3ʹ carbon of the next nucleotide?

    <p>3ʹ-5ʹ phosphodiester bond (A)</p> Signup and view all the answers

    How is DNA organized for mitosis to ensure equal distribution into daughter cells?

    <p>As chromosomes (C)</p> Signup and view all the answers

    What is the primary role of genes within a DNA molecule?

    <p>To direct the synthesis of proteins (B)</p> Signup and view all the answers

    How do the strands of DNA run in relation to each other?

    <p>In opposite directions (B)</p> Signup and view all the answers

    Which process involves transcribing genetic information into a messenger format?

    <p>Transcription (A)</p> Signup and view all the answers

    What structural unit does DNA first wrap around for compaction?

    <p>Histones (D)</p> Signup and view all the answers

    What type of RNA carries the genetic message to the ribosome for protein synthesis?

    <p>Messenger RNA (mRNA) (B)</p> Signup and view all the answers

    What do telomeres protect at the ends of chromosomes?

    <p>From degradation (C)</p> Signup and view all the answers

    Which proteins are crucial for the initiation of transcription in mammalian cells?

    <p>General transcription factors (A)</p> Signup and view all the answers

    Which process is DNA replication a part of?

    <p>Cell cycle (C)</p> Signup and view all the answers

    What replaces thymine in messenger RNA (mRNA)?

    <p>Uracil (C)</p> Signup and view all the answers

    What is formed when nucleosomes further condense?

    <p>Chromatin (B)</p> Signup and view all the answers

    What primarily regulates gene expression in cells?

    <p>Hormones and growth factors (D)</p> Signup and view all the answers

    What is the role of histones in relation to DNA?

    <p>To help compact DNA (D)</p> Signup and view all the answers

    What defines a gene?

    <p>A discrete segment of DNA encoding an amino acid sequence (B)</p> Signup and view all the answers

    What is the primary function of the TATA box in gene transcription?

    <p>To locate RNA polymerase at the initiation site (C)</p> Signup and view all the answers

    What role do enhancers play in transcription?

    <p>They bind to transcription factors to enhance gene activation (C)</p> Signup and view all the answers

    During transcription initiation, which nucleotides replace thymine in RNA?

    <p>Uracil (D)</p> Signup and view all the answers

    What is the direction of RNA strand growth during transcription?

    <p>5' to 3' (D)</p> Signup and view all the answers

    What happens when RNA polymerase reaches the transcription-termination sequence?

    <p>It dissociates from the DNA (C)</p> Signup and view all the answers

    Which of the following statements is true regarding introns and exons?

    <p>Exons are protein-coding sequences, introns are non-coding (C)</p> Signup and view all the answers

    Which molecules assist in the translation process by attaching amino acids to form proteins?

    <p>Ribosomes and transfer RNA (tRNA) (C)</p> Signup and view all the answers

    Where are ribosomes primarily formed?

    <p>From proteins associated with ribosomal RNA (rRNA) (C)</p> Signup and view all the answers

    What are the two subunits of a ribosome called?

    <p>Large and small subunits (A)</p> Signup and view all the answers

    What structure does tRNA have?

    <p>Clover leaf structure (A)</p> Signup and view all the answers

    Which site in the ribosome does the start tRNA bind to?

    <p>Either the A or P site (B)</p> Signup and view all the answers

    What is the function of the anticodon in tRNA?

    <p>It binds to the complementary triplet code on mRNA (D)</p> Signup and view all the answers

    What mediates the joining of amino acids to form a peptide bond?

    <p>Peptidyl transferase (B)</p> Signup and view all the answers

    What signals the termination of protein synthesis?

    <p>Presence of a stop codon (A)</p> Signup and view all the answers

    Where does the ribosome dissociate after protein synthesis is complete?

    <p>From the mRNA (A)</p> Signup and view all the answers

    Which cycle occurs within the mitochondria as part of energy production?

    <p>Tricarboxylic Acid Cycle (TCA) (B)</p> Signup and view all the answers

    What can lead to the shunting of pyruvate to lactate in high metabolic demand tissues?

    <p>Cellular acidosis due to anaerobic ATP production (B)</p> Signup and view all the answers

    What role do mitochondrial DNA mutations play in Parkinson's Disease?

    <p>They damage mtDNA, affecting ATP production in dopaminergic neurons. (A)</p> Signup and view all the answers

    What is the smallest unit of DNA?

    <p>Nucleotide (D)</p> Signup and view all the answers

    Which of the following best describes the structure of DNA?

    <p>A double helix formed by phosphodiester bonds between nucleotides. (C)</p> Signup and view all the answers

    How do mitochondrial DNA and nuclear DNA differ?

    <p>Nuclear DNA is located in the nucleus while mitochondrial DNA is not. (B)</p> Signup and view all the answers

    What type of bonds link nucleotides together in a DNA strand?

    <p>Covalent phosphodiester bonds (C)</p> Signup and view all the answers

    What is a replication fork?

    <p>The point of separation for the two strands of DNA during replication. (C)</p> Signup and view all the answers

    Which of the following statements about damaged nuclear DNA in cancer is true?

    <p>Point mutations in mtDNA have been observed in some cancers. (B)</p> Signup and view all the answers

    Flashcards

    What is the genome?

    The complete genetic information of an organism, contained in every cell. It guides the cell's activities based on stimuli and transmits inherited traits.

    Describe the structure of DNA.

    DNA is a polymer constructed from monomers called nucleotides. Its structure is a double helix, like a twisted ladder, with a width of 2 nm and 10.5 'steps' per turn.

    Explain complementary base pairing in DNA.

    Adenine (A) pairs with Thymine (T), and Guanine (G) pairs with Cytosine (C). These pairs are held together by hydrogen bonds, with two bonds between A and T, and three between G and C.

    What is a nucleotide?

    Nucleotides are the building blocks of DNA. Each nucleotide consists of a sugar molecule (deoxyribose), a nitrogenous base (adenine, thymine, guanine, or cytosine), and a phosphate group.

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    What are polynucleotides?

    Polynucleotides are long chains of nucleotides linked together, forming the structural units of DNA.

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    What is DNA replication?

    The process of copying DNA, ensuring each new cell receives a complete copy of the genome.

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    What is transcription?

    The process of transcribing genetic information from DNA into RNA.

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    What is translation?

    The process of translating genetic information from RNA into proteins, the building blocks of life.

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    What is a phosphodiester bond?

    In DNA, the 5' end of a nucleotide forms a bond with the 3' end of the next nucleotide, eliminating the OH group of the 3' carbon. This bond, called a 3'-5' phosphodiester bond, links the sugar-phosphate backbone of DNA.

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    What does antiparallel mean in DNA?

    The two strands of DNA run in opposite directions, like a one-way street. One strand runs 5' to 3', the other runs 3' to 5'. This is essential for DNA replication.

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    How is DNA compacted in the cell?

    DNA is tightly packaged inside the nucleus. It wraps around histone proteins, forming nucleosomes, which are further condensed into chromatin fibers, and ultimately organized into chromosomes.

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    What are histones and their role in gene regulation?

    Histones are modified by enzymes to regulate gene transcription. These modifications are known as epigenetics, influencing gene expression without altering the DNA sequence.

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    What is a gene?

    A gene is a segment of DNA that contains the instructions for building a specific protein. Genes are found on chromosomes and are the basic units of inheritance.

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    What are telomeres and their function?

    Telomeres are protective caps at the ends of chromosomes. They consist of repetitive DNA sequences that prevent degradation and fusion with other chromosomes.

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    What is the cell cycle and how does DNA replication fit in?

    The cell cycle encompasses a series of events leading to cell division. DNA replication occurs during a specific phase of the cell cycle, ensuring that each daughter cell receives a copy of the genetic material.

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    How are the 5' and 3' ends of DNA distinct and why is it important?

    The 5' end of a DNA strand is characterized by a phosphate group, while the 3' end has a hydroxyl group. This difference is essential for DNA polymerase to add new nucleotides during replication.

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    DNA ligation

    The process of joining Okazaki fragments on the lagging strand during DNA replication. This step is crucial to create a continuous DNA strand.

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    Messenger RNA (mRNA)

    A type of nucleic acid that carries the genetic information from DNA to ribosomes, where protein synthesis takes place.

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    Promoter region

    A region on DNA where transcription starts. It contains binding sites for transcription factors, which regulate the rate of gene transcription.

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    Transcription factors

    Proteins that bind to DNA and regulate the transcription of genes. They control the rate at which a gene is transcribed.

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    DNA replication

    The process of copying DNA, ensuring each new cell receives a complete copy of the genome.

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    Transcription

    The process of converting the genetic information in DNA into RNA.

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    Translation

    The process of converting the genetic information in RNA into proteins.

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    Gene

    A small section of DNA that contains the instructions for making a specific protein. They are essential for directing cellular functions.

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    What are enhancers?

    DNA sequences that enhance gene transcription by binding to transcription factors. They can be located far from the gene they regulate.

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    What is the TATA box?

    A promoter sequence located about 25-30 base pairs upstream of the transcription start site in a significant portion of genes. It helps RNA polymerase find the correct starting point for transcription.

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    What does RNA polymerase do?

    The enzyme responsible for synthesizing RNA from a DNA template. It reads the DNA sequence and adds complementary RNA nucleotides one by one.

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    Describe RNA chain elongation.

    The process of adding nucleotides to a growing RNA chain, following the sequence of the DNA template.

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    How does RNA transcription terminate?

    The process of ending RNA synthesis. It occurs when RNA polymerase encounters a specific DNA sequence that signals the end of the RNA molecule.

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    What are exons?

    Regions within a gene that code for protein sequences.

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    What are introns?

    Regions within a gene that do not code for proteins and are removed from the pre-mRNA during splicing.

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    Explain mRNA splicing.

    The process of removing introns and joining exons together in a pre-mRNA molecule, creating a mature mRNA molecule ready for translation.

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    Ribosome Subunits

    Ribosomes consist of two subunits: a large subunit and a small subunit. These subunits are separate in the cytosol but combine during protein synthesis.

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    Protein Synthesis Location

    Ribosomes are the site of protein synthesis. They read messenger RNA (mRNA) and add amino acids based on the three-base code (codon) on the mRNA.

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    tRNA Function

    Transfer RNA (tRNA) has a cloverleaf shape and carries specific amino acids. It has an anticodon that binds to the complementary codon on mRNA, bringing the amino acids in the correct order.

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    Triplet Code

    The triplet code refers to the three-base sequence (codon) on mRNA that codes for a specific amino acid.

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    Polypeptide Elongation

    The process of adding amino acids to a growing polypeptide chain is called elongation. The second tRNA binds to the ribosome, and the adjacent amino acids are joined by peptide bonds.

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    Protein Synthesis Termination

    Protein synthesis ends when a stop codon is reached on the mRNA. At this point, the completed polypeptide is released, and the ribosome detaches from the mRNA.

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    Mitochondrial Function

    Mitochondria are responsible for producing most of a cell's energy (ATP) through oxidative phosphorylation. They also house important biochemical pathways, like the citric acid cycle and part of the urea cycle.

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    Mitochondrial DNA

    Mitochondrial DNA (mtDNA) is unique because it is separate from the cell's nuclear DNA. It plays a crucial role in energy production within the mitochondria.

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    What is the cause of cellular acidosis in tissues with high metabolic demands?

    In tissues with high metabolic demand, like the brain, heart, and skeletal muscle, pyruvate is shunted to lactate to produce ATP anaerobically. This leads to a buildup of acid in the cells (acidosis). It's like your muscles burning during strenuous exercise.

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    How are mtDNA mutations related to Parkinson's disease?

    Mitochondrial DNA (mtDNA) mutations are linked to Parkinson's disease, particularly affecting the substantia nigra, the brain region responsible for controlling movement. These mutations disrupt the production of ATP in dopaminergic neurons.

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    How do mtDNA mutations relate to cancer?

    MtDNA mutations are also associated with cancer, but their precise role is not entirely clear. While there is evidence of point mutations in mtDNA in some cancers, the impact of these mutations on cancer development remains under investigation.

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    Describe the structure of a nucleotide.

    A nucleotide consists of three components: a nitrogenous base (adenine, guanine, cytosine, thymine), a pentose sugar (deoxyribose in DNA, ribose in RNA), and a phosphate group. These nucleotides link together to form polynucleotide chains.

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    Explain how DNA is organized within a cell.

    DNA is tightly wrapped around histone proteins, forming nucleosomes. These nucleosomes are further condensed into chromatin fibers, which are then organized into chromosomes. This packaging allows the vast DNA molecule to fit within the nucleus of a cell.

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    Describe the processes of transcription and translation.

    DNA undergoes transcription, where genetic information is copied from DNA to RNA, and translation, where RNA is used as a blueprint to create proteins. Both processes involve enzymes that regulate their steps.

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    What is a replication fork and why is it important?

    A replication fork is a Y-shaped structure formed during DNA replication. It represents the point where the two strands of the DNA double helix are unwound and separated. DNA synthesis occurs in a 5' to 3' direction on both strands, with one strand being synthesized continuously and the other discontinuously in fragments called Okazaki fragments.

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    Study Notes

    Nutritional Biochemistry - Introduction to Genetics

    Questions

    • Question 1: Proteins spanning the membrane with alpha helices contain amino acid side chains central to the complex
    • Question 2: Transport proteins moving solutes against a concentration gradient are carrier proteins, not channel proteins, because they bind to solutes and change shape to move them.
    • Question 3: Simple diffusion moves substances with their concentration gradient, while facilitated diffusion uses transport proteins.
    • Question 4: Active transport uses chemical or electrical energy.
    • Question 5: Na+ and K+ channels have similar structures but different orientations, allowing Na+ to enter the cell and K+ to exit.

    Learning Outcomes

    • Describe DNA structure and organization in the nucleus
    • Describe DNA replication
    • Outline the transcription and translation of a gene into a protein
    • Briefly outline the structure, control, and role of mtDNA, and associated diseases

    Genes and Genetics

    • Humans have 100 trillion cells, each nucleus containing 46 chromosomes (23 pairs).
    • Genes are DNA sections that code for protein synthesis.
    • Each chromosome pair receives one chromosome from each parent.

    The Genome

    • Every cell in an organism has the same genetic information.
    • The genome controls the biochemical activity in response to various stimuli.
    • The inherited traits are transmitted from generation to generation.
    • The human genome contains approximately 20,000-21,000 genes.
    • 99.9% of human genes are similar across individuals.

    The Structure of DNA

    • The genome is made up of DNA.
    • DNA is a long chain of nucleotides.
    • DNA is a double helix, analogous to a ladder.
    • DNA is 2nm wide and has 10.5 steps per turn (3.4 nm).

    DNA Methylation

    • DNA methylation involves adding a methyl group to DNA.
    • Demethylation is the removal of a methyl group.

    Nucleosides

    • Nucleosides consist of a sugar and a nitrogenous base.
    • The base is attached to the sugar via a bond.

    Nucleotide Structure

    • Nucleotides comprise three parts: a sugar, a base, and a phosphate group.
    • Nucleotides, connected by phosphodiester bonds, form the phosphate-sugar backbone.
    • Sugars are 5-carbon pentose sugars.

    Hydrogen Bonding Between Bases

    • DNA bases only bond with specific bases:
      • Adenine with Thymine
      • Guanine with Cytosine
    • Complementary base pairing is fundamental for DNA replication and translation.

    Polynucleotides

    • Nucleotides form polynucleotides, which are the fundamental structural units of DNA.
    • Phosphodiester bonds link nucleotides, creating the phosphate-sugar backbone.

    The DNA Double Helix

    • The deoxyribose chains and base-sugar bonding create a DNA double helix structure.
    • The DNA strands run antiparallel (3' and 5').
    • Directionality of the DNA strands is critical for DNA processes.

    Histones, Chromatin, and Chromosomes

    • DNA packaging for storage involves histones, forming nucleosomes.
    • Nucleosomes condense into chromatin fibers.
    • Chromatin fibers condense into chromosomes.

    Structure of Genes

    • A gene is a specific segment of DNA that encodes the amino acid sequence for a protein.
    • Genes are the fundamental units of inheritance.
    • Chromosomes have genes located in bands along their structure.

    Telomeres

    • Chromosomes have protective caps called telomeres.
    • Telomeres prevent degradation and fusion of chromosomes.

    The Cell Cycle

    • DNA replication is part of the cell cycle.
    • The cycle includes G1, S, and G2 phases, with G0 as a resting phase.
    • G1: Cytoplasm and organelles increase.
    • S: DNA is precisely duplicated.
    • G2: Cell and organelle growth.
    • M: Mitosis and cell division occur.

    Cell Cycle Checkpoints

    • Checkpoints ensure accuracy in replication and division.
    • 3 checkpoints:
      • G1 checkpoint.
      • S checkpoint.
      • M checkpoint.

    DNA Replication

    • Copying DNA to generate identical copies for daughter cells during cell division.
    • Replication occurs by unwinding the DNA double helix and synthesizing complementary strands on each parent strand.

    Replication Fork

    • The region where the DNA unwinds is known as the replication fork.
    • Replication takes place in the 5' to 3' direction.

    Leading/Lagging Strands

    • Leading strand: synthesised in a continuous manner following the replication fork.
    • Lagging strand: synthesised discontinuously in segments called Okazaki fragments.

    DNA Replication - Lagging Strand

    • RNA primer initiates synthesis steps.
    • DNA polymerase replaces RNA primer with DNA.
    • Okazaki fragments are joined together.

    Mitochondria DNA (mtDNA)

    • Mitochondria produce energy (ATP) via oxidative phosphorylation.
    • mtDNA is a small, circular, double stranded
    • mtDNA controls some mitochondrial functions.
    • mtDNA is only found in animal cells, maternally inherited.

    mtDNA Replication

    • The replication method of mtDNA is controversial.
    • Two theories exist for mtDNA lagging strand timing.

    mtDNA Transcription & Replication - Differences

    • mtDNA lacks introns and non-coding sequences.
    • Termination codons are post-transcriptionally created.

    Mitochondrial Disease

    • Mitochondrial dysfunction is linked to aging and degenerative diseases.
    • mtDNA is susceptible to damage from free radicals.
    • Certain disorders are caused by mutations in mtDNA.

    Energy Failure Through Damage

    • Cells lacking sufficient aerobic ATP production may resort to anaerobic respiration (using lactate).
    • Reduced ATP generation often results in cellular acidosis.
    • This is often observed in tissues with high metabolic demands, such as the CNS, heart, and skeletal muscle.

    Mitochondrial DNA Mutations

    • Parkinson's disease (PD) is one disorder in which mtDNA mutations have been identified.
    • mtDNA mutations may result from reactive oxygen species (ROS), affecting ATP production in dopaminergic neurons.
    • Cancer may be related to mtDNA mutations, but the relationship isn't fully understood yet.

    From Genes to Proteins

    • DNA carries the instructions to make proteins.
    • Transcription and translation are critical steps.
    • Proteins perform numerous cellular functions.

    Transcription

    • DNA acts as a template, creating an mRNA message.
    • The process is called transcription.
    • mRNA carries the information to the ribosomes.

    Initiation of Transcription – TFs

    • General transcription factors bind to the promoter region of DNA to initiate transcription correctly.
    • Transcription factors control the rate of transcription.
    • Hormones and messengers bind to, and activate, transcription factors.

    Initiation of Transcription – Other Regions

    • Enhancers and the TATA box further fine-tune transcription initiation efficiency.
    • The TATA box helps in locating RNA polymerase correctly.

    Chain Initiation

    • RNA polymerase begins attaching nucleotides to create an RNA molecule.
    • This process begins at the transcription start site.

    Chain Elongation

    • RNA polymerase synthesizes RNA in the 5' to 3' direction, according to the DNA template.

    Chain Termination

    • Special DNA sequences cause RNA polymerase to detach from the DNA molecule.

    Post-transcriptional Modification

    • Introns are removed from the initial RNA transcript, keeping only the exons coding for proteins.
    • mRNA splicing removes non-coding sequences.

    Translation

    • Amino acids are linked according to the mRNA codon sequence.
    • Ribosomes and transfer RNA (tRNA) facilitate amino acid attachment.

    Ribosomes

    • The site of protein synthesis.
    • Ribosomes are large RNA-protein complexes (rRNA + protein).
    • Ribosomes have 2 subunits, A and P sites, for amino acid binding and peptide bond formation.

    Transfer RNA (tRNA)

    • tRNA molecules carry amino acids to the ribosomes, based on the mRNA instructions.
    • tRNA contains an anticodon sequence.
    • Anticodon sequences are complementary to mRNA codons.

    The Triplet Code

    • Three bases (a codon) specify each amino acid.
    • The genetic code describes how codons relate to amino acids.

    Elongation of Peptide Chain

    • Subsequent amino acids are joined based on mRNA codons to extend the growing polypeptide chain.

    Termination of Translation

    • Termination of protein synthesis occurs after reaching specific stop codons.
    • Ribosomal subunits separate, releasing the polypeptide chain.

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