Lippincott's Biochemistry Chapter 22 - Nucleotide Metabolism

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Questions and Answers

What is primarily affected in patients with purine nucleoside phosphorylase deficiency?

  • Antibody production
  • B cell function
  • T cell function (correct)
  • Cytokine release

Which of the following treatments is effective for a disorder characterized by negatively birefringent monosodium urate crystals?

  • Bone marrow transplantation (correct)
  • Nucleotide supplementation
  • Chronic corticosteroid therapy
  • Dialysis

What is the regulated step in the synthesis of carbamoyl phosphate in mammalian cells?

  • Synthesis from glutamine and carbon dioxide (correct)
  • Phosphorylation of ribose 5-phosphate
  • Hydrolysis of uridine triphosphate
  • Conversion of aspartate to carbamoyl phosphate

Which of the following substances inhibits the action of carbamoyl phosphate synthetase II?

<p>Uridine triphosphate (UTP) (B)</p> Signup and view all the answers

In the context of nucleotide metabolism disorders, what consequence does a defect in ornithine transcarbamylase lead to?

<p>Increased pyrimidine synthesis (B)</p> Signup and view all the answers

Children with purine nucleoside phosphorylase deficiency typically die from what complication by age 2 years?

<p>Sepsis (C)</p> Signup and view all the answers

Which factors are sources of the atoms in the pyrimidine ring?

<p>Glutamine, CO2, and aspartate (D)</p> Signup and view all the answers

What role does PRPP play in pyrimidine synthesis?

<p>It activates carbamoyl phosphate synthetase II. (A)</p> Signup and view all the answers

What effect does lactic acidosis have on urate handling by the kidney?

<p>Increases urate reabsorption (B)</p> Signup and view all the answers

Which genetic mutation is associated with primary hyperuricemia?

<p>Mutations in the gene for X-linked PRPP synthetase (B)</p> Signup and view all the answers

What is the primary treatment option for ADA deficiency?

<p>Gene therapy (C)</p> Signup and view all the answers

Which factor is NOT commonly associated with the development of gout?

<p>Low physical activity (C)</p> Signup and view all the answers

How does PNP deficiency primarily affect the immune system?

<p>Disrupts T cell development (C)</p> Signup and view all the answers

What is the result of high levels of PRPP in purine metabolism?

<p>Increased purine production (B)</p> Signup and view all the answers

What is a common consequence of untreated ADA deficiency in children?

<p>Overwhelming infections (B)</p> Signup and view all the answers

Which of the following is a characteristic of primary hyperuricemia?

<p>Idiopathic in nature for most cases (C)</p> Signup and view all the answers

What enzyme is primarily affected in individuals with PNP deficiency?

<p>Phosphoribosyl pyrophosphate synthetase (B)</p> Signup and view all the answers

Which of these treatments is NOT considered for managing hyperuricemia?

<p>Antibiotics (C)</p> Signup and view all the answers

What primary issue contributes to hyperuricemia in gout?

<p>Underexcretion of uric acid (D)</p> Signup and view all the answers

Which compounds accumulate as a result of allopurinol treatment?

<p>Hypoxanthine and xanthine (C)</p> Signup and view all the answers

The deposition of crystals in gout is primarily due to which substance?

<p>Monosodium urate (B)</p> Signup and view all the answers

What is a common genetic factor that can lead to overproduction of uric acid?

<p>Inborn errors of metabolism (C)</p> Signup and view all the answers

What role does hypoxanthine play in purine metabolism?

<p>It is an intermediate in the synthesis of uric acid (D)</p> Signup and view all the answers

Which treatment strategy is primarily aimed at reducing uric acid levels?

<p>Use of allopurinol (A)</p> Signup and view all the answers

Which of the following is NOT a consequence of chronic gout?

<p>Increased flexibility of joints (C)</p> Signup and view all the answers

What is the primary mechanism of action of allopurinol in treating gout?

<p>Inhibits urate synthesis (B)</p> Signup and view all the answers

What is the primary enzyme responsible for converting ribonucleotides to deoxyribonucleotides?

<p>Ribonucleotide reductase (D)</p> Signup and view all the answers

What condition is caused by a near-total deficiency of HGPRT?

<p>Lesch-Nyhan syndrome (A)</p> Signup and view all the answers

Which condition is characterized by the accumulation of uric acid crystals in the joints?

<p>Gout (D)</p> Signup and view all the answers

Which compound is the end product of purine degradation?

<p>Uric acid (A)</p> Signup and view all the answers

What is a key difference between uric acid and its more soluble derivatives produced by allopurinol treatment?

<p>Uric acid forms crystals, whereas hypoxanthine does not (C)</p> Signup and view all the answers

Which of the following compounds inhibits the enzyme ribonucleotide reductase?

<p>Deoxyadenosine triphosphate (D)</p> Signup and view all the answers

What is triggered when there is overproduction of uric acid accompanied by the deposition of monosodium urate crystals?

<p>Gout (A)</p> Signup and view all the answers

Which condition is primarily characterized by elevated levels of uric acid in the blood and potential crystal formation in joints?

<p>Gout (C)</p> Signup and view all the answers

Which enzyme deficiency is most commonly linked to hereditary gout?

<p>Hypoxanthine-guanine phosphoribosyltransferase (HGPRT) (D)</p> Signup and view all the answers

What is the primary strategy for managing hyperuricemia in patients with a history of gout?

<p>Use of allopurinol to inhibit uric acid production (A)</p> Signup and view all the answers

In purine metabolism, which product is generated from the dephosphorylation of ATP?

<p>ADP (D)</p> Signup and view all the answers

Which of the following best describes the role of nucleotides in signal transduction pathways?

<p>They serve as second messengers. (D)</p> Signup and view all the answers

What is the primary metabolic pathway through which excess purines are redirected for reutilization?

<p>Salvage pathway (C)</p> Signup and view all the answers

What genetic disorder is characterized by a deficiency in the enzyme that converts hypoxanthine to xanthine in purine metabolism?

<p>Lesch-Nyhan syndrome (A)</p> Signup and view all the answers

Which nucleotide serves as a precursor in the synthesis of ATP, playing a crucial role in energy metabolism?

<p>Adenosine triphosphate (ATP) (C)</p> Signup and view all the answers

Which of the following coenzymes is NOT derived from nucleotides?

<p>Vitamin B12 (B)</p> Signup and view all the answers

Which statement about the role of ribonucleoside and deoxyribonucleoside phosphates in cells is true?

<p>They serve as carriers of activated intermediates for metabolism. (C)</p> Signup and view all the answers

What is the primary consequence of adenosine deaminase (ADA) deficiency in lymphocytes?

<p>Developmental arrest and apoptosis (A)</p> Signup and view all the answers

Which compound is produced as a long-lived inhibitor of xanthine oxidase from allopurinol?

<p>Oxypurinol (B)</p> Signup and view all the answers

What role does hypoxanthine play in purine metabolism when ADA is normal?

<p>It can be salvaged to reduce de novo purine synthesis (A)</p> Signup and view all the answers

In the context of uric acid metabolism, what is a consequence of treating patients with xanthine oxidase inhibitors like febuxostat?

<p>Accumulative xanthine leading to potential kidney damage (A)</p> Signup and view all the answers

Which of the following reflects the antioxidant effect of uric acid in the body?

<p>It may help prevent oxidative stress-related damage (C)</p> Signup and view all the answers

What is a primary function of nucleotides in intermediary metabolism?

<p>They participate as activators or inhibitors of key metabolic enzymes. (B)</p> Signup and view all the answers

Which nucleotide acts as a second messenger in signal transduction pathways?

<p>Cyclic guanosine monophosphate (cGMP) (A)</p> Signup and view all the answers

Which structural component is NOT a part of nucleotide composition?

<p>Alcohol molecule (C)</p> Signup and view all the answers

What primary role does the salvage pathway serve in nucleotide metabolism?

<p>It allows the recycling of preformed bases from cell turnover. (C)</p> Signup and view all the answers

Which coenzyme is derived from nucleotides and plays a crucial role in metabolic reactions?

<p>Flavin adenine dinucleotide (FAD) (A)</p> Signup and view all the answers

What type of nitrogenous bases are adenine and guanine classified as?

<p>Purines (C)</p> Signup and view all the answers

Which of the following statements is true regarding dietary intake of purines and pyrimidines?

<p>Very few dietary purines and pyrimidines are utilized; most are degraded. (A)</p> Signup and view all the answers

Which step in purine synthesis is primarily associated with the use of 5-phosphoribosyl-1-pyrophosphate (PRPP)?

<p>Formation of inosine monophosphate (IMP) (A)</p> Signup and view all the answers

What is the primary purpose of using synthetic inhibitors like sulfonamides in purine synthesis?

<p>To inhibit rapidly dividing microorganisms (A)</p> Signup and view all the answers

In purine synthesis, what is the role of N10-formyl-THF?

<p>Serves as a one-carbon donor (B)</p> Signup and view all the answers

What is the significance of hypoxanthine in purine metabolism?

<p>It is involved in the synthesis of tRNA (C)</p> Signup and view all the answers

What happens when there is an overproduction of PRPP in purine metabolism?

<p>Increased levels of uric acid (A)</p> Signup and view all the answers

Which of the following accurately describes the role of ATP in the purine synthesis pathway?

<p>It serves as an energy source in several steps (C)</p> Signup and view all the answers

Which compound is not typically associated with purine ring synthesis?

<p>Lactate (B)</p> Signup and view all the answers

What is the most likely outcome of using structural analogs as inhibitors in the purine synthesis pathway?

<p>Disruption of nucleotide synthesis in pathogens (A)</p> Signup and view all the answers

Which of the following components is crucial for the initial steps of the purine synthesis pathway?

<p>PRPP (C)</p> Signup and view all the answers

Which factor plays a role in determining the order of atom addition in the purine ring?

<p>Enzymatic regulation during synthesis (A)</p> Signup and view all the answers

What is the role of glutamine in the synthesis of 5-phosphoribosylamine?

<p>It replaces the pyrophosphate group of PRPP. (B)</p> Signup and view all the answers

Which substance inhibits glutamine:phosphoribosylpyrophosphate amidotransferase (GPAT)?

<p>Adenosine monophosphate (AMP) (A)</p> Signup and view all the answers

What is the relationship between PRPP concentration and the Michaelis constant (Km) for GPAT?

<p>PRPP concentration is typically below Km. (A)</p> Signup and view all the answers

Which nucleotide acts as the parent purine nucleotide for AMP and GMP?

<p>Inosine monophosphate (IMP) (C)</p> Signup and view all the answers

During purine nucleotide biosynthesis, which base is associated with inosine monophosphate (IMP)?

<p>Hypoxanthine (A)</p> Signup and view all the answers

What is the significance of the committed step in purine nucleotide biosynthesis?

<p>It marks the transition from PRPP to purine nucleotides. (A)</p> Signup and view all the answers

Which condition reflects the regulation of purine metabolism by end products?

<p>High AMP concentrations inhibit GPAT activity. (C)</p> Signup and view all the answers

How is inosine monophosphate (IMP) primarily synthesized in purine metabolism?

<p>Through a series of steps following 5-phosphoribosylamine. (D)</p> Signup and view all the answers

What effect does increased PRPP concentration have on the rate of purine synthesis?

<p>It accelerates the synthesis rate. (D)</p> Signup and view all the answers

What is required as a coenzyme for forming tetrahydrofolate in the purine synthesis pathway?

<p>Tetrahydrofolate (B)</p> Signup and view all the answers

Which substance is primarily inhibited by methotrexate in purine metabolism?

<p>Dihydrofolate reductase (A)</p> Signup and view all the answers

What is the role of sulfa drugs in bacterial purine synthesis?

<p>Blocking the pathway to purine synthesis (D)</p> Signup and view all the answers

Humans rely on external sources for which vitamin essential for purine synthesis?

<p>Folic acid (A)</p> Signup and view all the answers

Which intermediate is produced from the condensation of ribose 5-phosphate in the purine synthesis pathway?

<p>Inosine monophosphate (D)</p> Signup and view all the answers

What effect do folic acid analogs have on purine metabolism?

<p>Inhibit the reduction of dihydrofolate (B)</p> Signup and view all the answers

What is a primary effect of inhibiting dihydrofolate reductase in bacteria?

<p>Reduced ability to produce nucleotides (C)</p> Signup and view all the answers

In purine metabolism, the conversion of what compound is essential for generating ATP?

<p>Adenosine triphosphate (A)</p> Signup and view all the answers

Which of the following best describes the function of ribose 5-phosphate in purine synthesis?

<p>A precursor of nucleotides (D)</p> Signup and view all the answers

What is the consequence of humans' inability to synthesize folic acid?

<p>Dependence on dietary sources for nucleotides (B)</p> Signup and view all the answers

Match the following nucleotide components with their descriptions:

<p>Nitrogenous base = Can be purines or pyrimidines Pentose monosaccharide = Five-carbon sugar component Phosphate groups = Energy currency in cells Coenzymes = Molecules essential for enzyme function</p> Signup and view all the answers

Match the following molecules with their primary function:

<p>cAMP = Second messenger in signal transduction FAD = Electron carrier in metabolism NAD+ = Coenzyme in redox reactions UDP-glucose = Carbohydrate synthesis intermediate</p> Signup and view all the answers

Match the following nucleotides with their classification:

<p>Adenine = Purine Cytosine = Pyrimidine Guanine = Purine Thymine = Pyrimidine</p> Signup and view all the answers

Match the following metabolic roles with their corresponding nucleotides:

<p>cGMP = Regulatory roles in signaling pathways ATP = Primary energy currency NADP+ = Electron acceptor in biosynthesis cAMP = Regulator of metabolic pathways</p> Signup and view all the answers

Match the following nucleotide forms with their attributes:

<p>Ribonucleosides = Contains ribose sugar Deoxyribonucleosides = Contains deoxyribose sugar Monophosphate = Single phosphate group Triphosphate = Three phosphate groups, high energy</p> Signup and view all the answers

Match the following types of nucleotides with their characteristics:

<p>Nucleoside monophosphate = Contains one phosphate group Nucleoside diphosphate = Contains two phosphate groups Nucleoside triphosphate = Contains three phosphate groups 5'-ribonucleotide = Derived from ribose sugar</p> Signup and view all the answers

Match the following terms with their definitions:

<p>Adenosine monophosphate = A nucleoside monophosphate also known as AMP Adenosine diphosphate = A nucleoside diphosphate also known as ADP Adenosine triphosphate = A nucleoside triphosphate also known as ATP Nucleotide = A nucleoside with one or more phosphate groups</p> Signup and view all the answers

Match the following types of sugars with their corresponding nucleotide types:

<p>Deoxyribose = 5'-deoxyribonucleotide Ribose = 5'-ribonucleotide Pentose = Sugar component of nucleotides Nucleotide = Building block of nucleic acids</p> Signup and view all the answers

Match the following nucleotides with their associated energy characteristics:

<p>ATP = High-energy molecule ADP = Medium-energy molecule AMP = Low-energy molecule Nucleotide triphosphate = Contributes to energy transfer</p> Signup and view all the answers

Match the following components to their roles in nucleotide structure:

<p>Base = Carries genetic information Sugar = Connects to phosphate groups Phosphate = Provides energy storage Nucleoside = Composed of a base and sugar</p> Signup and view all the answers

Flashcards

Pyrimidine synthesis

The creation of pyrimidine rings, which happen before attaching to ribose 5-phosphate.

Purine synthesis

Creation of purine rings on a pre-existing ribose 5-phosphate.

Carbamoyl phosphate synthesis

The regulated step in pyrimidine synthesis, making carbamoyl phosphate.

Carbamoyl phosphate synthetase II (CPS II)

Enzyme that catalyzes carbamoyl phosphate synthesis in pyrimidine pathway.

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Pyrimidine synthesis regulation

Uridine triphosphate (UTP) inhibits CPS II, while PRPP activates it.

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Uridine triphosphate (UTP)

End product of pyrimidine synthesis, that inhibits CPS II.

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Pyrimidine ring sources

The pyrimidine ring's atoms come from glutamine, carbon dioxide (CO2), and aspartate.

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PRPP

Provides ribose 5-phosphate for pyrimidine attachment.

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Gout

A disorder characterized by high levels of uric acid in the blood (hyperuricemia), leading to recurring episodes of painful inflammation in joints due to crystal buildup.

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Hyperuricemia

High levels of uric acid in the blood.

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Uric acid

A waste product produced during the breakdown of purines.

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Treatment for Gout

Medication (allopurinol) that inhibits uric acid production, leading to lower levels and less crystal formation.

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Purines

Organic compounds involved in making DNA and RNA.

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Crystal Deposition

The accumulation of crystals, in this case, uric acid crystals, in tissues or organs.

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Allopurinol

A medication used to treat gout by inhibiting the production of uric acid.

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Nucleotide function

Nucleotides are essential components for producing RNA, DNA, and synthesizing proteins. They also act as energy carriers, components of coenzymes, and messengers in signal transduction.

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Nucleotide structure

Nucleotides consist of a nitrogenous base (purine or pyrimidine), a pentose sugar (ribose or deoxyribose), and one to three phosphate groups.

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Purines

A class of nitrogenous bases found in nucleotides, including adenine and guanine.

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Pyrimidines

A class of nitrogenous bases found in nucleotides, including cytosine, thymine, and uracil.

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Nucleotide roles

Nucleotides serve various functions including energy storage, signaling, enzyme component, and crucial roles in metabolic pathways.

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Ribonucleosides/deoxyribonucleosides

These are nucleotides without the phosphate group, building blocks of RNA and DNA.

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Renal Urate Reabsorption

The process by which the kidneys absorb uric acid back into the bloodstream.

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Hyperuricemia

High levels of uric acid in the blood.

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Uric Acid Overproduction

A cause of hyperuricemia where the body produces more uric acid than it can excrete.

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Primary Hyperuricemia

Hyperuricemia with no known cause, usually idiopathic.

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PRPP Synthetase

An enzyme that plays a role in purine production.

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Vmax

The maximum rate at which an enzyme can catalyze a reaction.

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Km

The substrate concentration at which an enzyme works at half its maximum rate.

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Allosteric inhibitors

Molecules that bind to an enzyme at a site other than the active site, changing the enzyme's shape and activity.

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Combined Immunodeficiency (SCID)

A rare genetic disorder where the immune system is severely compromised.

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ADA Deficiency

A type of SCID caused by a genetic defect in adenosine deaminase.

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PNP Deficiency

A rare, autosomal recessive immune deficiency affecting T-cell development.

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Nucleotide Structure

A nucleotide is a sugar, a nitrogenous base, and one or more phosphate groups. The sugar can be ribose (RNA) or deoxyribose (DNA).

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Purine Synthesis

The creation of purine rings on a pre-existing ribose-5-phosphate molecule.

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PRPP

Activated pentose that provides ribose-5-phosphate for purine/pyrimidine synthesis.

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Purine Synthesis Committed Step

The step producing phosphoribosylamine from PRPP and glutamine.

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Purine Nucleotide Salvage Pathways

The use of pre-formed purine bases to create nucleotides (e.g., adenine, guanine).

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Lesch-Nyhan Syndrome

Inherited disorder caused by a near-total deficiency of HGPRT, leading to hyperuricemia and self-mutilation.

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Ribonucleotide Reduction

The process of converting ribonucleotides into deoxyribonucleotides.

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Ribonucleotide Reductase

Enzyme that converts ribonucleotides to deoxyribonucleotides.

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Pyrimidine Synthesis Regulation

UTP (an end product inhibits the enzyme) and PRPP (activates the enzyme) regulate this step.

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Deoxyuridine Monophosphate (dUMP) to Deoxythymidine Monophosphate (dTMP)

Conversion of dUMP to dTMP, an important step in DNA synthesis.

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Pyrimidine Synthesis Committed Step

Carbamoyl phosphate synthesis, which is catalyzed by CPS II.

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Hyperuricemia

A condition of high uric acid levels in the blood, which can lead to gout.

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Gout

A painful condition caused by the deposition of uric acid crystals in joints and soft tissues.

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Nucleotide

Essential molecule for all cells; building block of DNA and RNA, carriers of activated intermediates, structural components of certain coenzymes, and second messengers.

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Metabolism

The sum of all chemical reactions in the body, including nucleotide synthesis, carbohydrate, lipid, and protein synthesis.

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Nucleotide Structure

Nucleotide comprises a nitrogenous base, a pentose sugar (ribose or deoxyribose), and one to three phosphate groups.

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Purines/Pyrimidines

Types of nitrogenous bases forming part of nucleotide structure.

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Nucleotide Functions

Nucleotides play various roles such as energy carriers, structural components of coenzymes, signaling molecules, and crucial components of metabolic pathways.

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Nucleotides Role in Cells

Nucleotides are vital for all cell processes including synthesizing proteins, producing RNA and DNA, and carrying activated intermediates in various metabolic pathways.

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Ribonucleoside/Deoxyribonucleoside

Nucleotides without phosphate groups, building blocks of RNA and DNA.

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Purine nucleotide biosynthesis

The process of creating purine nucleotides, important components of DNA and RNA.

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5-phosphoribosylamine synthesis

The committed step in purine nucleotide biosynthesis, converting PRPP and glutamine into 5-phosphoribosylamine.

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Glutamine:phosphoribosylpyrophosphate amidotransferase (GPAT)

An enzyme that catalyzes the committed step in purine biosynthesis, producing 5-phosphoribosylamine.

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Inosine monophosphate (IMP)

A key intermediate in purine nucleotide synthesis, leading to the formation of AMP and GMP.

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Purine 5'-nucleotides

AMP and GMP, the end products of purine biosynthesis that inhibit the committed step.

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Phosphoribosylpyrophosphate (PRPP)

A crucial molecule in nucleotide synthesis, used in the committed step of purine biosynthesis.

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Purine synthesis

The process of creating purine rings on a pre-existing ribose-5-phosphate molecule.

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PRPP

Activated pentose sugar that provides ribose-5-phosphate for purine/pyrimidine synthesis.

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Purine Synthesis Committed Step

The reaction producing phosphoribosylamine from PRPP and glutamine.

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Synthetic Inhibitors (of Purine Synthesis)

Drugs designed to block the growth of microorganisms or rapidly dividing cells, without affecting human cells.

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ATP

A molecule that provides energy for cellular processes.

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N 10-formyl-THF

A molecule that acts as a one-carbon donor in certain metabolic pathways.

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Ribose-5-phosphate

A sugar molecule crucial for creating nucleotides.

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Inorganic phosphate

A phosphate ion that isn't part of an organic molecule; a common component of biochemical reactions.

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Folic Acid Analogs

Compounds like methotrexate that inhibit the reduction of dihydrofolate to tetrahydrofolate, a crucial step in folate metabolism.

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Tetrahydrofolate

A coenzyme crucial for various metabolic reactions, including purine and pyrimidine synthesis.

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Dihydrofolate Reductase

The enzyme that catalyzes the reduction of dihydrofolate to tetrahydrofolate.

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Sulfa Drugs

Drugs that inhibit bacterial folic acid synthesis, but do not affect human synthesis.

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Purine Synthesis

The creation of purine rings on a pre-existing ribose 5-phosphate molecule.

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Human Folate Requirement

Humans must obtain folate from external sources because they cannot synthesize it.

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Uric Acid Agents

Substances that enhance the kidney's excretion of uric acid, used for patients who under-excrete uric acid.

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Allopurinol

A medicine that blocks uric acid production, used for patients who overproduce it.

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Oxypurinol

A long-lasting uric acid production inhibitor, formed by metabolizing allopurinol.

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Gout

A painful condition due to high uric acid, with crystal buildup in joints.

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Adenosine Deaminase Deficiency (ADA)

A condition where the body lacks an enzyme leading to adenosine buildup and immune deficiency.

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Severe Combined Immunodeficiency (SCID)

A genetic disorder where the immune system is severely weakened.

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Febuxostat

A non-purine inhibitor of xanthine oxidase (XO), an alternative gout treatment.

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Xanthine Oxidase (XO)

An enzyme crucial for uric acid production; it's inhibited by allopurinol and oxypurinol.

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Hyperuricemia

High levels of uric acid in the blood, a risk factor for gout.

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Nucleotide

Essential molecule for all cells. Building block of DNA and RNA, carriers of activated intermediates, structural components of certain coenzymes, and second messengers.

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Nucleotide Function

Nucleotides play various roles including energy carriers, structural components of coenzymes, signaling molecules, and components of metabolic pathways.

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Nucleotide Structure

A nucleotide comprises a nitrogenous base, a pentose sugar (ribose or deoxyribose), and one to three phosphate groups.

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Metabolism

The sum of all chemical reactions in the body, including nucleotide, carbohydrate, lipid, and protein synthesis.

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Purines

A class of nitrogenous bases found in nucleotides, including adenine and guanine.

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Pyrimidines

A class of nitrogenous bases found in nucleotides, including cytosine, thymine, and uracil.

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Ribonucleoside/Deoxyribonucleoside

Nucleotides without phosphate groups, building blocks of RNA and DNA.

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Nucleoside 5'-phosphate

A nucleoside with a phosphate group attached to the 5' carbon of the pentose sugar.

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Nucleoside Monophosphate (NMP)

A nucleoside with one phosphate group attached.

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Nucleoside Diphosphate (NDP)

A nucleoside with two phosphate groups attached.

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Nucleoside Triphosphate (NTP)

A nucleoside with three phosphate groups attached.

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High-energy bond

Bonds in NTPs with a large negative change in free energy during hydrolysis.

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Nucleotide

A nucleoside with one or more phosphate groups attached.

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5'-ribonucleotide

A nucleotide with a ribose sugar.

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5'-deoxyribonucleotide

A nucleotide with a deoxyribose sugar.

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Adenosine Monophosphate (AMP)

A nucleoside monophosphate with the base adenine.

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Adenosine Diphosphate (ADP)

A nucleoside diphosphate with the base adenine.

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Adenosine Triphosphate (ATP)

A nucleoside triphosphate with the base adenine.

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Study Notes

Nucleotide Metabolism Overview

  • Nucleotides are essential for all cells.
  • RNA, DNA, and proteins cannot be produced without nucleotides.
  • Nucleotides act as carriers of intermediates in carbohydrate, lipid, and protein synthesis.
  • They're structural components of coenzymes like FAD, NAD, and NADP.
  • Nucleotides like cAMP and cGMP are second messengers.
  • Nucleotides are crucial energy sources.
  • They regulate numerous metabolic pathways.
  • Purines and pyrimidines can be synthesized de novo or from salvaged precursors.

Nucleotide Structure

  • Nucleotides consist of a nitrogenous base, a pentose sugar, and one to three phosphate groups.
  • Nitrogenous bases are categorized into purines and pyrimidines.
  • Purines include adenine (A) and guanine (G) and are found in both DNA and RNA.
  • Pyrimidines include cytosine (C), which is present in both DNA and RNA, thymine (T) in DNA, and uracil (U) in RNA.
  • Unusual, modified bases are also present in some DNA and RNA species. Modifications include methylation, glycosylation, acetylation, and reduction.

Purine Nucleotide Synthesis

  • Purine rings are constructed from amino acids, CO2, and N10-formyltetrahydrofolate.
  • The process primarily occurs in the liver.
  • Ribose 5-phosphate is utilized as a precursor.
  • 5-Phosphoribosyl-1-pyrophosphate (PRPP) plays a key role in the process.
  • Glutamine:phosphoribosylpyrophosphate amidotransferase (GPAT) is a critical enzyme and is regulated by AMP, GMP, and PRPP.
  • Inosine monophosphate (IMP) is a crucial intermediate.
  • AMP and GMP are synthesized from IMP.

Purine Nucleotide Degradation

  • Pancreatic nucleases hydrolyze dietary nucleic acids in the small intestine.
  • Nucleotides are sequentially degraded into nucleosides, their components, and eventually uric acid.
  • Uric acid is a major end product and is primarily excreted in the urine.
  • Some purines can be salvaged to nucleotides: the enzymes adenine phosphoribosyltransferase (APRT) and hypoxanthine-guanine phosphoribosyltransferase (HGPRT) are involved.
  • Lesch-Nyhan syndrome is an X-linked disorder caused by defects in HGPRT. This results in elevated uric acid, leading to various symptoms.

Deoxyribonucleotide Synthesis

  • Deoxyribonucleotides are required for DNA synthesis.
  • Ribonucleotide reductase is the key enzyme that converts ribonucleotide diphosphates to deoxyribonucleotide diphosphates.
  • The enzyme itself is crucial for continued synthesis.
  • The enzyme activity is regulated by allosteric sites that bind to products or substrates.
  • Deoxyribonucleotides are essential metabolites for DNA synthesis.

Pyrimidine Synthesis

  • Pyrimidine ring synthesis occurs before attachment to ribose-5-phosphate.
  • Pyrimidine precursors combine to form the pyrimidine ring.
  • Carbamoyl phosphate synthetase II is a crucial regulatory enzyme in pyrimidine synthesis.
  • Orotate phosphoribosyltransferase catalyzes the conversion of orotate to orotate monophosphate (OMP).
  • OMP decarboxylase converts OMP to uridine monophosphate (UMP).

Pyrimidine Degradation

  • Degradation produces soluble products like B-aminoisobutyrate and f-alanine.
  • Pyrimidine bases are sometimes salvaged.
  • Pyrimidine bases aren't degraded to the same insoluble product as purines.

Important Diseases/Conditions

  • Lesch-Nyhan syndrome
  • Gout
  • Orotic aciduria
  • Adenosine deaminase deficiency

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