Nucleoskeleton Functions and Characteristics
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Questions and Answers

What primary roles does the nucleoskeleton serve within the nucleus?

  • Protein synthesis and cellular respiration
  • Exocytosis and endocytosis
  • Signal transduction and metabolic regulation
  • Mechanical support and functional organization (correct)
  • Which of the following proteins is specifically associated with the mechanical integrity of the nucleus?

  • Myosin
  • Actin
  • Lamins (correct)
  • Titin
  • Which component of the nucleoskeleton is primarily involved in gene expression regulation?

  • Lamin binding proteins
  • Actin
  • NuMa (correct)
  • Titin
  • What characteristic of the nucleoskeleton allows it to respond to changes within the nucleus rapidly?

    <p>Dynamic nature of the network (C)</p> Signup and view all the answers

    What are LAD regions in relation to the nucleoskeleton?

    <p>Lamina associated domains linked to the nuclear envelope (D)</p> Signup and view all the answers

    Which protein is described as a motor protein found both in the cytoskeleton and the nucleus?

    <p>Myosin (A)</p> Signup and view all the answers

    What is the primary structural role of emerin in the nucleoskeleton?

    <p>Muscular disease involvement (B)</p> Signup and view all the answers

    In which area of the nucleoskeleton are the S/MAR regions found?

    <p>Karyoplasm (C)</p> Signup and view all the answers

    What is the main role of the nuclear matrix?

    <p>To provide architectural stability to the nucleus (A)</p> Signup and view all the answers

    What do S/MAR regions primarily associate with?

    <p>Nuclear matrix or scaffolds (C)</p> Signup and view all the answers

    How do TADs contribute to gene expression?

    <p>They isolate gene expression to specific regions (D)</p> Signup and view all the answers

    Which component enhances the boundary regions of TADs?

    <p>Cohesin and CTCF (D)</p> Signup and view all the answers

    What is the primary function of nucleolar scaffolds?

    <p>To provide support to the nuclear matrix (C)</p> Signup and view all the answers

    What characterizes the interaction of chromatin loops within TADs?

    <p>Self-interaction predominance over interactions with other domains (A)</p> Signup and view all the answers

    What happens to the chromosomes due to the organization provided by the nuclear matrix?

    <p>They are packed in an orderly manner (B)</p> Signup and view all the answers

    Where are TADs primarily enriched within the nucleus?

    <p>At the boundaries of chromatin loops (A)</p> Signup and view all the answers

    Which compartment is characterized by a loose chromatin state with a high content of active genes?

    <p>A compartment (B)</p> Signup and view all the answers

    What does the presence of scaffold/matrix attachment regions (S/MARS) indicate?

    <p>Regions where TAD borders overlap and bind to the nuclear matrix (B)</p> Signup and view all the answers

    Where are B compartments predominantly located within the nucleus?

    <p>Periphery interacting with lamin LADS (A)</p> Signup and view all the answers

    What is a key protein that aids in the binding of chromatin loops to the nuclear matrix?

    <p>CTFT protein (A)</p> Signup and view all the answers

    Which type of LAD is in direct contact with the inner nuclear membrane?

    <p>cLAD (B)</p> Signup and view all the answers

    What is the main purpose of the channels mentioned in the content?

    <p>To facilitate the transcription of RNA (D)</p> Signup and view all the answers

    Which domain is known to be associated with the perinucleolar matrix?

    <p>NAD (C)</p> Signup and view all the answers

    What type of chromatin interacts with the internal nuclear membrane but is not always transcriptionally active?

    <p>fLAD (A)</p> Signup and view all the answers

    What role does the S/MAR play in gene transcription?

    <p>It anchors genes to the transcription machinery. (C)</p> Signup and view all the answers

    Which factor is responsible for determining where the loop formation stops?

    <p>CTCF (B)</p> Signup and view all the answers

    Which function is NOT associated with the nuclear envelope?

    <p>Regeneration of cellular components (A)</p> Signup and view all the answers

    What characterizes the inner and outer nuclear membranes?

    <p>The membranes contain different sets of transmembrane proteins. (C)</p> Signup and view all the answers

    How does mechanotransduction relate to the nuclear envelope?

    <p>It is a process by which cells respond to mechanical forces affecting nuclear functions. (B)</p> Signup and view all the answers

    What is the structure formed by the nuclear pore?

    <p>An opening that allows selective passage of molecules between the cytoplasm and nucleoplasm. (D)</p> Signup and view all the answers

    Why is it crucial for the nuclear membrane to be impermeable to ions and small molecules?

    <p>To maintain a stable environment for genetic material and prevent potential damage. (B)</p> Signup and view all the answers

    Which of the following does not describe the organization of chromatin by the nuclear envelope?

    <p>It facilitates unrestricted access of cytoplasmic molecules to chromatin. (A)</p> Signup and view all the answers

    What role does the nucleoskeleton's inner matrix play in gene expression?

    <p>It serves as an anchoring site for molecular complexes related to chromatin mechanisms. (B)</p> Signup and view all the answers

    How do S/MAR proteins influence gene expression in response to external stimuli?

    <p>They can activate one gene while repressing others through chromatin orchestration. (A)</p> Signup and view all the answers

    What is the significance of maintaining chromatin organized in loops?

    <p>It provides physical space for gene transcription and replication processes. (D)</p> Signup and view all the answers

    What transformation occurs to heterochromatin when a cell receives a signal to express certain genes?

    <p>It transforms into euchromatin, allowing for transcription machinery access. (A)</p> Signup and view all the answers

    Which of the following accurately describes the function of structural transcription factors like CFTF and COHESIN?

    <p>They partition the genome into looped domains. (C)</p> Signup and view all the answers

    What is the function of the S/MAR in relation to chromatin?

    <p>To anchor chromatin loops and facilitate transcription activation. (B)</p> Signup and view all the answers

    What occurs when proteins and chromatin move to facilitate gene expression?

    <p>Heterochromatin is remodeled into euchromatin. (D)</p> Signup and view all the answers

    What happens to the chromatin when external signals are received by the cell?

    <p>The chromatin loops become stabilized and form new configurations. (C)</p> Signup and view all the answers

    What is the primary role of the nucleoskeleton in a cell?

    <p>Supporting the nucleolus and pre-ribosome assembly (B)</p> Signup and view all the answers

    Which proteins form links between the nucleoskeleton and cytoskeleton?

    <p>Nesprin and SUN domain proteins (B)</p> Signup and view all the answers

    What is the nuclear lamina primarily composed of?

    <p>Intermediate filaments and lamins (A)</p> Signup and view all the answers

    What is the primary function of the nuclear lamina?

    <p>Providing mechanical stability to the nucleus (D)</p> Signup and view all the answers

    How does mechanotransduction occur in relation to the cytoskeleton?

    <p>Through adhesion complexes sending signals to chromatin (C)</p> Signup and view all the answers

    Which type of lamins is primarily associated with the nuclear lamina?

    <p>A and B type lamins (C)</p> Signup and view all the answers

    What role do adhesion complexes play in the cell?

    <p>They facilitate communication between cells and the extracellular matrix. (C)</p> Signup and view all the answers

    Which of the following statements about nuclear lamins is true?

    <p>Type V intermediate filaments are exclusive to metazoans. (D)</p> Signup and view all the answers

    Flashcards

    Nucleoskeleton

    A fibrous network of non-histone proteins found within the nucleus, providing structural support, organizing the genome, and participating in gene expression regulation.

    Nuclear lamina

    A specific region of the nucleoskeleton, located near the nuclear envelope, that interacts with chromatin domains and is involved in organizing the genome.

    Nuclear matrix

    The inner network of globular proteins within the nucleoskeleton, connected to chromatin regions and involved in gene expression.

    Lamina-associated domains (LADs)

    Regions of the genome that attach to the nuclear lamina.

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    Scaffold/Matrix Associated Regions (S/MARs)

    Regions of the genome that attach to the nuclear matrix.

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    Pore-linked filaments

    A filamentous structure that connects the nuclear pore complex to the nucleoskeleton, facilitating transport and communication between the nucleus and cytoplasm.

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    Nucleolar associated domain scaffold (NAD-Scaffold)

    A specialized region of the nucleoskeleton responsible for anchoring the nucleolus, the site of ribosome biogenesis.

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    Lamins

    A type of intermediate filament protein found in the nuclear lamina, critical for nuclear shape and structural integrity. Mutations in lamin proteins are associated with diseases.

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    S/MARs (Scaffold/Matrix Associated Regions)

    DNA sequences attached to the nuclear matrix or scaffold, helping to organize the genome.

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    Chromatin Domains

    The space within the nucleus where chromosomes are organized.

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    TADs (Topologically Associated Domains)

    Large chromatin domains that interact more with themselves than with adjacent domains, contributing to cell-specific gene expression.

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    Boundary Regions

    Regions that form the boundaries of TADs, enriched in CTCF and cohesin proteins.

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    CTCF and Cohesin

    Proteins that bind to DNA and help regulate gene expression by controlling interactions within TADs.

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    Nucleolar Scaffolds

    The structural support elements within the nuclear matrix.

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    Structural Organization of the Genome

    The process of organizing the genome within the nucleus.

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    Lamins (A, B, and C)

    Proteins that form the basic building blocks of the nuclear lamina, playing a crucial role in maintaining the nucleus's shape and function.

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    Cytoskeleton

    A network of proteins and other structures that extends throughout the cytoplasm of a cell, providing support, aiding in transport, and facilitating cell movement.

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    Mechanotransduction

    The process by which cells respond to mechanical forces, such as stretching or pressure, by converting the physical stimuli into biochemical signals.

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    LINC (Linkers of the Nucleoskeleton to the Cytoskeleton) Complexes

    Specialized proteins that link the nucleoskeleton to the cytoskeleton, creating a continuous network throughout the cell.

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    Cellular Adaptability

    The ability of cells to adapt to their environment by changing their shape, size, and function in response to external stimuli, such as mechanical forces.

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    Cell-Cell and Cell-Matrix Interactions

    The process by which cells interact with their surrounding environment, including other cells and the extracellular matrix, through specialized adhesion complexes.

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    A Compartment

    Open chromatin state, characterized by active genes, early transcript genes, and a permissive transcriptional environment. Found preferentially in the central region of the nucleus and close to nuclear pore complexes.

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    B Compartment

    Closed chromatin state, marked by silenced genes, late replication timing, and preferential location at the nuclear periphery. Interacts with lamin LADS.

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    S/MARs (Scaffold/matrix attachment regions)

    Regions within TADs that bind to the nuclear matrix. They are rich in CTFT proteins, which facilitate the attachment of loops.

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    LADs (Lamina associated domains)

    Areas where chromatin condenses and associates with the inner nuclear membrane. They regulate the transition between active and inactive chromatin.

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    cLAD (Constitutive LAD)

    Constitutive LADs are directly attached to the inner nuclear membrane.

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    fLAD (Facultative LAD)

    Facultative LADs are extensions of consecutive LADs but are not directly attached to the inner nuclear membrane.

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    NADs (Nucleolar associated domains)

    Areas associated with the perinucleolar matrix (outside of the nucleolus). They are associated with LADs, poor in genes, and important for nucleolar function.

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    Channel Model

    A model that explains how DNA is organized within the nucleus. It suggests that DNA loops form channels that allow machinery for gene expression, like polymerases, to access genes.

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    S/MARs - Regulating Gene Expression

    S/MARs can act like 'switches', activating or repressing specific genes based on external signals. They can also insulate a gene, preventing it from being affected by surrounding genes.

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    Nuclear Matrix: Organizing the Genome

    They are involved in organizing the genetic material within the nucleus, creating loops that allow processes like transcription, replication, and regulation to occur efficiently.

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    Nuclear Matrix: Anchoring Molecular Complexes

    They function as docking stations for various molecular complexes, keeping them ready for action when needed. These complexes are critical for gene expression and other nuclear functions.

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    Nuclear Matrix & Chromatin

    The nuclear matrix can be seen as a scaffold that supports the chromatin, which is the complex of DNA and proteins responsible for packaging genetic information.

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    Nuclear Matrix: Regulating Chromatin Structure

    When a cell receives a signal, the nuclear matrix, along with special proteins, can rearrange the heterochromatin (inactive DNA) into euchromatin (active DNA) to enable gene expression.

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    Structural Transcription Factors (CFTF & Cohesin)

    These are proteins that help partition the genome into looped domains, influencing gene expression and regulation within these domains.

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    S/MARs: Topological Domains

    S/MARs can also act like 'locks', effectively isolating genes within their domains, which can impact their accessibility and regulation.

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    What are S/MARs?

    A DNA sequence that attaches to the nuclear matrix, helping to organize the genome and regulate gene expression.

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    What is CTCF?

    A protein that binds to DNA and defines the boundaries of Topologically Associated Domains (TADs), regions of the genome that interact more within themselves than with other regions, regulating gene expression.

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    What is cohesin?

    A protein that helps in forming loops in chromosomes and facilitates the formation of Topologically Associated Domains (TADs).

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    What is the nuclear envelope?

    The envelope surrounding the nucleus, similar to the cell's plasma membrane. It protects the genome, anchors chromatin, organizes chromosomes, and regulates gene expression.

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    What are the components of the nuclear envelope?

    The nuclear membrane has two phospholipid bilayers: the inner and outer nuclear membranes. They are quite impermeable to ions and small molecules, ensuring a controlled environment within the nucleus.

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    What is the nuclear pore?

    A channel that connects the cytoplasm to the nucleoplasm, allowing molecules to move between the nucleus and the cytoplasm.

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    What is the perinuclear space?

    The area between the inner and outer nuclear membrane, separated by the nuclear pore. It facilitates the movement of molecules between the nucleus and cytoplasm.

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    What is the nucleolar NAD-Scaffold?

    A specialized region of the nucleoskeleton that anchors the nucleolus, a site of ribosome biogenesis. It also provides structural support for the nucleolus, ensuring proper ribosome production.

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    Study Notes

    Nuclear Structure

    • The nucleus in eukaryotic cells maintains DNA integrity and controls cellular activities (metabolism, growth, reproduction) by regulating gene expression.
    • It is a double-membraned organelle containing chromatin, nuclear bodies, and the nuclear matrix.
    • The nucleoplasm (karyoplasm, nuclear juice) is a gel-like matrix within the nucleus, allowing chemical reactions, containing nucleic acids, proteins, glycolysis products (ATP, NAD, and acetyl CoA), and ions (K+, Na+, Ca++, Mg++).

    Nucleoskeleton

    • Proposed in the 1970s, the nucleoskeleton is the residual nuclear protein fraction left after removal of chromatin with high-salt solutions.
    • It provides mechanical support and functional organization to the nucleus, organizing the genome within the nuclear volume.
    • The main component is intermediate filaments, which are extremely strong and stable, connecting to the cytoskeleton.
    • Major function is organization of chromatin, transcription, splicing, and DNA repair.
    • It organizes the genome, regulates gene expression, and maintains the 3D organization of nuclear structures.

    Components of the Nucleoskeleton

    • Lamins (A, B, C): critical for nuclear diseases, often associated with diseases. Lamins A and C are distributed throughout the nucleus, and lamins B are more specifically in the nuclear lamina.
    • Lamin-binding proteins: bind lamins to the inner nuclear membrane.
    • Actin: a similar microfilament to that found in the cytoskeleton, though more globular.
    • NuMA (Nuclear Mitotic Apparatus protein): crucial for nuclear shape, important in gene expression.
    • Myosin: a motor protein similar to that found in the cytoskeleton, also present in the nucleus.
    • Emerin: important for muscular diseases, and its structural role.
    • Titin: protein involved in the nucleus.
    • Residual content of the nuclear envelope: the remaining material after elimination of the outermost nuclear components (envelope, chromatin &etc.).

    Nuclear Lamina

    • A dense fibrillar network of intermediate filaments.
    • Closely associated with the inner nuclear membrane.
    • Key to nuclear stability, organization, mechanotransduction, chromatin organization and regulation of chromatin binding proteins.
    • Present in animals.

    Nuclear Matrix

    • The mesh of proteins remaining after removing histones and lipids.
    • Provides structural and architectural stabilization to the nucleus.
    • Associated with S/MARs (Scaffold/Matrix Attachment Regions) for organization.

    Topologically Associated Domains (TADs)

    • Large chromatin domains with high internal interaction compared to interaction outside the domains. Important for gene expression.
    • Separate the enhancers and promoters in gene transcription from different TADs.
    • Organized by CTCF and cohesin proteins.
    • Organized in compartments; the 'A' compartment is often open chromatin with lots of active genes, the 'B' compartment is often closed chromatin and with silenced genes.

    Nuclear Pore Complexes (NPCs)

    • Essential for transport between the nucleus and cytoplasm (nucleocytoplasmic transport).
    • Allow molecules and structures to enter and exit the nucleus.
    • Regulated and dynamic, impacting gene expression.

    LINC (Linker of Nucleoskeleton to Cytoskeleton) Complexes

    • Connect the nuclear lamina to the cytoskeleton.
    • Allow signals/force transfer between the cytoskeleton/extracellular environment and nucleus/chromatin.
    • Important in mechanotransduction.

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