Podcast
Questions and Answers
Which of the following proteins involved in cotranslational translocation of proteins into the ER membrane is NOT a GTP-hydrolyzing protein?
Which of the following proteins involved in cotranslational translocation of proteins into the ER membrane is NOT a GTP-hydrolyzing protein?
- elongation factors in ribosome-mediated mRNA translation
- a subunit of the SRP receptor
- P54 subunit of SRP
- Sec61 translocon (correct)
Protein insertion into the mammalian ER membrane is typically:
Protein insertion into the mammalian ER membrane is typically:
- post-translational
- quasitranslational
- pretranslational
- cotranslational (correct)
Post-translational translocation of some secretory proteins in yeast is powered by:
Post-translational translocation of some secretory proteins in yeast is powered by:
- phospholipid hydrolysis by phospholipase C
- cAMP hydrolysis by cAMP phosphodiesterase
- ATP hydrolysis by BiP (correct)
- GTP hydrolysis EF-Tu
In the absence of targeting information, what is the default location of proteins synthesized on cytosolic ribosomes?
In the absence of targeting information, what is the default location of proteins synthesized on cytosolic ribosomes?
In a cell-free protein synthesis system utilizing microsomes from fragmented ER, under which condition could you determine if the new protein was imported into the microsome?
In a cell-free protein synthesis system utilizing microsomes from fragmented ER, under which condition could you determine if the new protein was imported into the microsome?
Which of the following is true about ER import?
Which of the following is true about ER import?
Type I membrane proteins have all of the following properties, except:
Type I membrane proteins have all of the following properties, except:
GPI-anchoring serves a special function, especially in polarized epithelial cells, because this modification serves to target proteins to the:
GPI-anchoring serves a special function, especially in polarized epithelial cells, because this modification serves to target proteins to the:
The topology of membrane proteins can often be predicted by computer programs that identify ______ topogenic segments.
The topology of membrane proteins can often be predicted by computer programs that identify ______ topogenic segments.
Glycosylation, a post-translational modification of proteins, occurs in the:
Glycosylation, a post-translational modification of proteins, occurs in the:
All the following proteins interact with exposed amino acids during protein folding in the ER, except:
All the following proteins interact with exposed amino acids during protein folding in the ER, except:
Unassembled or misfolded proteins in the RER can be damaging to the physiology of a cell and therefore are transported to the cytosol where they are degraded. This transport process is referred to as:
Unassembled or misfolded proteins in the RER can be damaging to the physiology of a cell and therefore are transported to the cytosol where they are degraded. This transport process is referred to as:
Sorting of proteins to mitochondria and chloroplasts is:
Sorting of proteins to mitochondria and chloroplasts is:
Tom/Tim and Toc/Tic protein complexes are involved in:
Tom/Tim and Toc/Tic protein complexes are involved in:
Protein sequences for targeting to mitochondria or chloroplasts are located at:
Protein sequences for targeting to mitochondria or chloroplasts are located at:
Protein import into the mitochondrial matrix is supported by energy input from:
Protein import into the mitochondrial matrix is supported by energy input from:
A polypeptide chain contains an amphipathic helix, with arginine and lysine residues on one side and hydrophobic residues on the other. It will likely enter:
A polypeptide chain contains an amphipathic helix, with arginine and lysine residues on one side and hydrophobic residues on the other. It will likely enter:
In a cell that lacks cytosolic Hsc70:
In a cell that lacks cytosolic Hsc70:
Which of the following components of mitochondrial import are NOT required for a sequence containing a matrix-targeting sequence and an intermembrane-space-targeting sequence?
Which of the following components of mitochondrial import are NOT required for a sequence containing a matrix-targeting sequence and an intermembrane-space-targeting sequence?
Many peroxisomal matrix proteins are imported as:
Many peroxisomal matrix proteins are imported as:
PTS1- and PTS2-bearing matrix proteins are targeted to:
PTS1- and PTS2-bearing matrix proteins are targeted to:
Unlike mitochondria and chloroplasts, peroxisomes can arise ______ from precursor membranes, as well as by division of preexisting organelles.
Unlike mitochondria and chloroplasts, peroxisomes can arise ______ from precursor membranes, as well as by division of preexisting organelles.
The nuclear pore complex allows for:
The nuclear pore complex allows for:
During the import of proteins into the nucleus, the importin subunit binds directly to:
During the import of proteins into the nucleus, the importin subunit binds directly to:
Which type of RNA participates in nuclear export of mRNA?
Which type of RNA participates in nuclear export of mRNA?
Which of the following is present in the nuclear export sequence of PKI (an inhibitor of protein kinase A)?
Which of the following is present in the nuclear export sequence of PKI (an inhibitor of protein kinase A)?
Transport of unspliced HIV mRNA from the nucleus to the cytoplasm of host cells is promoted by a virus-encoded protein named:
Transport of unspliced HIV mRNA from the nucleus to the cytoplasm of host cells is promoted by a virus-encoded protein named:
How does Ran-GTP participate in the nuclear export of the HIV Rev protein?
How does Ran-GTP participate in the nuclear export of the HIV Rev protein?
The nuclear pore complex (NPC) contains ______ structures that form a gel-like matrix that allow small molecules to diffuse through, but require larger proteins to enter via importin or other nuclear chaperones.
The nuclear pore complex (NPC) contains ______ structures that form a gel-like matrix that allow small molecules to diffuse through, but require larger proteins to enter via importin or other nuclear chaperones.
During the process of nuclear import, a GEF works in the:
During the process of nuclear import, a GEF works in the:
In multipass membrane proteins synthesized in association with membrane-bounded ribosomes of the rough ER,
signal-anchor and stop-transfer anchor sequences alternate. What do these sequences do?
In multipass membrane proteins synthesized in association with membrane-bounded ribosomes of the rough ER, signal-anchor and stop-transfer anchor sequences alternate. What do these sequences do?
Having misfolded soluble or secretory proteins in the RER contributes to what investigators call the “traffic jam,” a scenario associated with a number of human diseases where the normal transport of proteins is blocked by these abnormal proteins and the inability of protein complexes to arrive at their correct site and function properly. Briefly describe how the cell overcomes this particular traffic jam by exporting the misfolded proteins out of the RER into the cytosol, where they are degraded by the proteasome.
Having misfolded soluble or secretory proteins in the RER contributes to what investigators call the “traffic jam,” a scenario associated with a number of human diseases where the normal transport of proteins is blocked by these abnormal proteins and the inability of protein complexes to arrive at their correct site and function properly. Briefly describe how the cell overcomes this particular traffic jam by exporting the misfolded proteins out of the RER into the cytosol, where they are degraded by the proteasome.
What are the general features of an N-terminal signal sequence that targets secretory proteins to the ER?
What are the general features of an N-terminal signal sequence that targets secretory proteins to the ER?
In the absence of targeting information, what is the default location of proteins synthesized on cytosolic
ribosomes?
In the absence of targeting information, what is the default location of proteins synthesized on cytosolic ribosomes?
How does Ran·GTP participate in the nuclear export of the HIV Rev protein?
How does Ran·GTP participate in the nuclear export of the HIV Rev protein?
To what extent do peroxisomal matrix protein import and peroxisomal membrane protein import share the same
machinery?
To what extent do peroxisomal matrix protein import and peroxisomal membrane protein import share the same machinery?
What is meant by de novo formation of peroxisomes?
What is meant by de novo formation of peroxisomes?
What is the meaning of “quality control in the ER?”
What is the meaning of “quality control in the ER?”
Why are bacteria often a poor choice for the production of proteins for therapeutic purposes?
Why are bacteria often a poor choice for the production of proteins for therapeutic purposes?
During in vitro translation of mitochondrially targeted proteins, when must mitochondria be added for import of proteins synthesized on cytosolic ribosomes?
During in vitro translation of mitochondrially targeted proteins, when must mitochondria be added for import of proteins synthesized on cytosolic ribosomes?
How are proteins imported into the thylakoids of chloroplasts?
How are proteins imported into the thylakoids of chloroplasts?
Flashcards
Cotranslational translocation
Cotranslational translocation
Protein insertion into the ER membrane during translation.
Post-translational translocation
Post-translational translocation
Protein insertion into the ER membrane after translation is complete.
N-terminal signal sequence
N-terminal signal sequence
Sequence on the N-terminus of a protein, directing it to the ER.
Signal recognition particle (SRP)
Signal recognition particle (SRP)
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Sec61 translocon
Sec61 translocon
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Type I membrane protein
Type I membrane protein
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GPI anchor
GPI anchor
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Hydrophobic topogenic segments
Hydrophobic topogenic segments
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Signal-anchor sequence
Signal-anchor sequence
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Stop-transfer sequence
Stop-transfer sequence
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ERAD (ER-associated degradation)
ERAD (ER-associated degradation)
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Mitochondrial protein import
Mitochondrial protein import
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Mitochondrial targeting sequence
Mitochondrial targeting sequence
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Nuclear import/export
Nuclear import/export
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Nuclear localization signal (NLS)
Nuclear localization signal (NLS)
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Nuclear export sequence (NES)
Nuclear export sequence (NES)
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Peroxisome
Peroxisome
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Peroxisome import
Peroxisome import
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Study Notes
Moving Proteins into Membranes and Organelles
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Cotranslational translocation into the ER membrane involves proteins that are not GTP-hydrolyzing, such as the Sec61 translocon.
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Protein insertion into the mammalian ER membrane is typically cotranslational.
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Post-translational translocation of some secretory proteins in yeast is powered by ATP hydrolysis by BiP.
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In the absence of targeting information, proteins synthesized on cytosolic ribosomes will diffuse throughout the cytosol.
N-terminal Signal Sequences
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N-terminal signal sequences targeting proteins to the ER are 16-30 amino acids long, with a hydrophobic core of 6-12 amino acids. Positively charged amino acids often precede the core.
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Proteins targeted to the ER are typically 16 to 30 amino acids in length and have a hydrophobic core region of 6 to 12 amino acids in length, with one or more positively charged amino acids preceding the core.
ER Import Conditions
- Determining if a protein was imported into microsomes involves incubating ribosomes and mRNA with microsomes, then adding a protease before analysis. Proteases break down proteins.
ER Import
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N-terminal signal sequences are necessary for targeting to the ER, even if added to proteins not normally targeted to the ER.
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Signal recognition particles (SRPs) are needed during co-translational protein import.
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Ribosomal translation of a 6-12 amino acid signal sequence on the N-terminus initiates the import process via interaction with SRP.
Type I Membrane Proteins
- Features of Type I membrane proteins except for an internal signal-anchor sequence include a cleavable signal sequence, an internal stop-transfer sequence, and an N-out, C-in topology.
GPI-Anchoring
- GPI-anchoring targets proteins to the plasma membrane in polarized epithelial cells.
Membrane Protein Topology Prediction
- Computer programs that predict protein topology identify hydrophilic and hydrophobic segments.
Multipass Membrane Proteins
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Signal-anchor sequences insert internal protein segments into the ER membrane, while stop-transfer sequences prevent proteins from further passing through the membrane.
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These sequences alternate in multipass membrane proteins, creating proteins that loop in and out of the membrane multiple times.
Misfolded Protein Traffic Jam
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Misfolded proteins in the RER cause a "traffic jam," blocking normal protein transport.
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Cells overcome this by exporting misfolded proteins to the cytosol for degradation via the proteasome system after trimming the carbohydrate chains of misfolded proteins.
ER Quality Control
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Proteins must be properly folded and modified before exiting the ER to the Golgi apparatus.
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Improperly folded proteins are degraded in the cytosol.
Bacterial Protein Production
- Bacteria are often not suitable for therapeutic protein production because disulfide bond formation is harder in bacteria than in animal cells.
Mitochondrial and Chloroplast Protein Sorting
- Proteins are sorted post-translationally to mitochondria and chloroplasts.
Chloroplast Protein Import
- Multiple N-terminal targeting sequences are often necessary for import into chloroplast thylakoids.
Mitochondrial Protein Import
- Protein import into the mitochondrial matrix requires energy input from ATP hydrolysis by chaperone proteins, especially in the cytosol.
Peroxisomal Protein Import
- Peroxisomal matrix proteins are typically imported as folded proteins.
Nuclear Protein Import
- Importin subunits bind directly to the basic nuclear localization signals in cargo proteins.
Nuclear mRNA Export
- Certain types of RNA, like heterogenous nuclear RNA (hnRNA), are involved in mRNA export from the nucleus.
HIV Rev Protein Export
- Ran-GTP, a GTP-binding protein, plays a role in nuclear export mechanisms of the HIV Rev protein. It binds to nuclear export receptor exportin 1 and facilitates its movement through the nuclear pore complex (NPC) before releasing Rev in the cytosol.
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