Molecular Biology: DNA & RNA Polymerases
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Questions and Answers

What happens to the epigenome of monozygotic twins as they grow older?

  • It becomes identical to their parents' epigenome.
  • It becomes more identical over time.
  • It remains unchanged throughout life.
  • It diverges due to different lifestyles. (correct)
  • What does Mendel’s law of independent assortment imply about unlinked genes?

  • They can influence each other's inheritance.
  • They always assort together during gamete formation.
  • Their allele presence in a gamete is unrelated. (correct)
  • They are located on the same chromosome.
  • What conclusion was drawn from Martha Chase and Alfred Hershey's experiment using radioactive isotopes?

  • Both DNA and protein can carry genetic information.
  • Isotopes have no role in genetic material identification.
  • Proteins are the genetic material.
  • DNA, not protein, is the genetic material. (correct)
  • How did Chargaff’s findings challenge the tetranucleotide hypothesis?

    <p>It showed that base ratios vary across different species. (C)</p> Signup and view all the answers

    What is the application of knockout technology in gene editing?

    <p>To target specific genes for removal or replacement. (C)</p> Signup and view all the answers

    What is the orientation of the two strands in the DNA double helix?

    <p>One strand runs 5’ to 3’, and the other runs 3’ to 5’ (D)</p> Signup and view all the answers

    Which base pairs are correctly matched according to their type?

    <p>Adenine-Thymine and Cytosine-Guanine (D)</p> Signup and view all the answers

    What structure holds the nucleosome together?

    <p>H1 histone (D)</p> Signup and view all the answers

    What is the main role of highly conserved DNA sequences?

    <p>They require natural selection to maintain essential gene products (B)</p> Signup and view all the answers

    Why is cell proliferation critical in organisms?

    <p>It contributes to growth, tissue repair, and cell replacement (D)</p> Signup and view all the answers

    During which subphase of interphase does DNA replication occur?

    <p>S phase (C)</p> Signup and view all the answers

    How do cyclins regulate the cell cycle?

    <p>By changing in concentration to trigger checkpoints (D)</p> Signup and view all the answers

    What might slow rates of mutation in certain DNA regions lead to over time?

    <p>Preservation of closely related gene sequences (C)</p> Signup and view all the answers

    What role do cyclins play in the cell cycle?

    <p>They phosphorylate target proteins in conjunction with CDKs. (C)</p> Signup and view all the answers

    How do mutations in proto-oncogenes contribute to cancer?

    <p>They can turn into oncogenes, leading to excess cell proliferation. (D)</p> Signup and view all the answers

    What differentiates malignant tumors from benign tumors?

    <p>Malignant tumors can invade neighboring tissues while benign tumors cannot. (D)</p> Signup and view all the answers

    What is the primary level of control for gene expression?

    <p>Transcription regulation via RNA polymerase binding. (C)</p> Signup and view all the answers

    What factor can influence the longevity and expression levels of a gene?

    <p>The degradation rate of mRNA molecules. (D)</p> Signup and view all the answers

    Which statement accurately describes the genome and its components?

    <p>The genome contains both coding and non-coding DNA. (D)</p> Signup and view all the answers

    Which component of gene expression plays a critical role in the assembly of proteins?

    <p>Messenger RNA (mRNA). (D)</p> Signup and view all the answers

    What is a characteristic feature of metastatic tumors?

    <p>They arise from cells that have traveled from a primary tumor site. (D)</p> Signup and view all the answers

    What role does lactose play in the regulation of the lac operon?

    <p>It converts to allolactose, which changes the shape of the lac repressor. (B)</p> Signup and view all the answers

    How does estradiol influence gene expression?

    <p>It binds to a receptor in the cytoplasm, forming a hormone-receptor complex. (B)</p> Signup and view all the answers

    What is the effect of methylation on gene expression in relation to epigenetics?

    <p>It represses transcription by methylating cytosine in promoter regions. (C)</p> Signup and view all the answers

    Which of the following statements about epigenetic changes is true?

    <p>They can affect phenotype without changing genotype. (A)</p> Signup and view all the answers

    What was the finding from Meany's work on rats related to maternal care?

    <p>Maternal care type influenced epigenetic changes in subsequent generations. (A)</p> Signup and view all the answers

    What is characteristic of imprinted genes?

    <p>They inherit only one working copy, with one allele silenced. (A)</p> Signup and view all the answers

    What is a consequence of environmental effects on epigenetics mentioned in the content?

    <p>Widespread decrease in DNA methylation from air pollution. (B)</p> Signup and view all the answers

    What is the impact of paternal versus maternal imprinting according to the genetic conflict hypothesis?

    <p>Paternal imprinting favors larger offspring, while maternal imprinting favors smaller offspring. (B)</p> Signup and view all the answers

    which genotype would normally found in a gamete?

    <p>RS (B)</p> Signup and view all the answers

    What is the role of a "promoter" in the process of transcription?

    <p>It serves as the starting point for RNA polymerase to bind and initiate transcription (B)</p> Signup and view all the answers

    Which of the following statements about the promoter is true?

    <p>It is part of the gene's regulatory region but not transcribed into RNA (C)</p> Signup and view all the answers

    How are the genome and proteome connected?

    <p>The genome directly determines the specific proteins produced, while the proteome is the actual set of proteins present in a cell at a given time (A)</p> Signup and view all the answers

    Which of the following best describes the proteome?

    <p>The complete collection of proteins actively expressed in a cell or organism at a given time (C)</p> Signup and view all the answers

    Flashcards

    Antiparallel DNA strands

    The two strands of DNA run in opposite directions, with one strand going from 5' to 3' and the other from 3' to 5'.

    Base Pairing in DNA

    Adenine (A) always pairs with thymine (T), and cytosine (C) always pairs with guanine (G). These base pairs have equal lengths, ensuring a consistent helix structure.

    Nucleosome Structure

    A core of eight histone proteins (an octamer) is wrapped by DNA, forming a nucleosome. Another histone protein (H1) holds the nucleosome together, and linker DNA connects adjacent nucleosomes.

    Highly Conserved DNA Sequences

    DNA sequences that remain very similar over long periods of evolution. These sequences are important for essential functions and may be conserved due to natural selection or slower mutation rates.

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    Cell Proliferation

    The process of cell division that is essential for growth, repair, and replacement of damaged cells.

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    G1 Phase

    The first gap phase of interphase, where the cell grows, synthesizes proteins, and prepares for DNA replication.

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    S Phase

    The phase of interphase where the cell's DNA is replicated.

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    Cyclins

    Regulatory proteins whose concentrations cycle throughout the cell cycle. Specific cyclin thresholds are required to pass cell cycle checkpoints.

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    Cyclin-CDK Complex

    Cyclins are proteins that bind to and activate cyclin-dependent kinases (CDK), which are enzymes that phosphorylate target proteins. This phosphorylation can either activate or deactivate the protein, acting like an on/off switch. These complexes are crucial for regulating the cell cycle.

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    Cancer and Cell Cycle Mutations

    Mutations in genes that control the cell cycle can lead to uncontrolled cell division, resulting in cancer. Proto-oncogenes, which promote cell growth and division, can mutate into oncogenes and cause excessive proliferation. Tumor suppressors, which normally inhibit cell growth, can lose their function when mutated, also contributing to cancer.

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    Benign vs Malignant Tumors

    Benign tumors are non-cancerous and do not spread, while malignant tumors are cancerous and can invade surrounding tissues and organs. Metastatic tumors form when cancer cells travel through the bloodstream or lymphatic system to establish secondary tumors in distant locations.

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    Gene Expression: Transcription

    Gene expression is primarily controlled at the level of transcription, which involves the binding of RNA polymerase to a specific region of DNA called the promoter. Transcription factors can bind to enhancer sequences on DNA, regulating the amount of mRNA produced. This process allows cells to control which genes are expressed.

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    Gene Expression: Translation

    Gene expression can also be controlled by regulating the translation of mRNA. mRNA transcripts have a lifespan, and their degradation by nucleases affects the amount of protein produced. The longevity of an mRNA transcript determines the expression levels of a gene.

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    Genome, Transcriptome, and Proteome

    The genome is the complete set of genetic information in an organism. Includes coding DNA (genes) and non-coding DNA. The transcriptome refers to all RNA transcripts, both coding (mRNA) and non-coding (rRNA, tRNA, etc.). The proteome is the complete set of proteins.

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    Epigenetics and Identical Twins

    Monozygotic twins have identical DNA at birth. They may have different lifestyles, which influences their epigenomes over time.

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    Mendel's Law of Segregation

    During meiosis, the two alleles of a gene separate, and each gamete (sperm or egg) receives one allele. The orientation of homologous chromosomes is random, leading to a 50/50 chance of inheriting either allele.

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    Mendel's Law of Independent Assortment

    The inheritance of one gene doesn't influence the inheritance of another gene, especially if they're on different chromosomes (unlinked).

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    Hershey-Chase Experiment: DNA is the Genetic Material

    Martha Chase and Alfred Hershey used radioactive isotopes (32P for DNA and 35S for protein) to prove that DNA is the genetic material. They infected bacteria with viruses labeled with these isotopes and found that only the radioactive DNA entered the bacteria, not the protein coat. This concluded that DNA, not protein, carries genetic information.

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    Chargaff's Rules

    Chargaff's experiment proved that DNA base composition differs between species, contradicting the tetranucleotide hypothesis. He discovered a 1:1 ratio of adenine to thymine and cytosine to guanine, suggesting a specific pairing mechanism in DNA.

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    How does lactose control gene expression in the Lac Operon?

    The Lac operon is a group of genes in prokaryotes responsible for lactose uptake and metabolism. When lactose is absent, the lac repressor binds to the operator, blocking RNA polymerase from transcribing the genes. However, when lactose is present, it converts to allolactose, which binds to the repressor, causing a shape change that prevents it from binding to the operator, allowing transcription to proceed.

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    How does estradiol influence gene expression?

    Estradiol, a steroid hormone, is small and nonpolar, allowing it to easily pass through the cell membrane. It then binds to a receptor in the cytoplasm, forming a complex that binds to DNA and regulates the expression of specific genes. This, in turn, affects tissue development and function by influencing cell division and differentiation.

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    What are epigenetic changes?

    Epigenetic changes refer to alterations in gene expression without changes in the underlying DNA sequence. Methylation, a process that adds a methyl group to cytosine bases in DNA, can repress transcription. Additionally, methylation of amino acids in histone proteins can either activate or repress gene expression by influencing DNA packaging.

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    How can epigenetic changes be inherited?

    Epigenetic modifications can be passed down from one generation to the next, influencing phenotypic traits even without alterations in DNA sequence. This was demonstrated by Meaney's research on rats, showing that maternal care significantly affected the offspring's behavior and was passed down to subsequent generations.

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    How do environmental factors influence epigenetics?

    Environmental factors can significantly impact epigenetic changes. For example, exposure to air pollution can lead to a widespread decrease in DNA methylation, suggesting a potential link between environmental stressors and changes in gene expression.

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    What are imprinted genes?

    Imprinted genes are those where only one copy, either from the mother or father, is active. During the development of sperm and eggs, most epigenetic markers are erased, allowing for differentiation. The genetic conflict hypothesis suggests that imprinting arose from competition between males for maternal resources, leading to paternal imprinting favoring large offspring and maternal imprinting favoring smaller offspring.

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    How does imprinting affect offspring size in ligers and tigons?

    Ligers, offspring of a lion father and a tiger mother, are larger due to the paternal growth gene being dominant. In contrast, tigons, offspring of a tiger father and a lion mother, are smaller because the maternal growth gene is dominant. This illustrates how imprinting can influence offspring size.

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    How does gene expression lead to cell differentiation?

    Gene expression is the process by which genetic information is used to create proteins. This process can be regulated by a variety of factors such as the presence of hormones, environmental signals, and the type of cell. Different cells express different genes because they need different proteins to perform their specialized functions. This can lead to differences in the phenotypes of individuals, even if they have the same genotype.

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    Study Notes

    DNA and RNA Polymerases

    • Polymerases catalyze phosphodiester linkage between nucleotides
    • DNA structure is antiparallel (5' to 3' and 3' to 5')
    • 5' to 3' direction ensures accurate sequence copying during replication, transcription, and translation
    • Purine (A-T) and pyrimidine (C-G) base pairs maintain consistent DNA helix structure
    • Nucleosome structure: histone octamer wrapped by chromatin, with H1 histone holding the core together; linker DNA connects nucleosomes

    DNA Sequences and Conservation

    • Highly conserved DNA sequences remain similar over evolutionary time, often related to conserved gene products essential for survival
    • Conservation may also be due to slower mutation rates in certain regions
    • Cell proliferation is essential for growth, tissue repair, and replacement

    Cell Cycle Regulation

    • Cyclins are regulatory proteins that control the cell cycle
    • Cyclin concentrations fluctuate during the cell cycle
    • Cyclins bind to cyclin-dependent kinases (CDKs) to regulate cell cycle checkpoints.
    • Phosphorylation by the cyclin-CDK complex activates or deactivates target proteins, acting as an on/off switch

    Gene Expression

    • Gene expression is primarily controlled at the level of transcription, particularly affecting which mRNA is made from a gene.
    • Transcription factors bind to enhancer sequences on DNA and ultimately modulate how much mRNA is produced
    • Gene expression can also be controlled by regulating translation by mRNA degradation rates

    DNA Replication and Gene Expression

    • The genome contains all genetic info, including coding and non-coding DNA
    • The transcriptome is the set of all RNA transcripts (mRNA, rRNA, tRNA)
    • The proteome is the set of all proteins
    • Gene expression differences explain cellular differentiation

    Lactose and the Lac Operon

    • Lactose influences gene expression in prokaryotes (e.g. the Lac operon)
    • The Lac operon regulates lactose uptake and metabolism
    • Absence of lactose: the lac repressor prevents transcription
    • Presence of lactose: allolactose binds to the repressor, changing its shape, allowing transcription

    Hormone Steroids and Epigenetics

    • Steroid hormones (e.g., estradiol) are lipid-soluble; easily passing lipid bilayer
    • Hormone-receptor complex binds to specific DNA sequences, altering gene expression
    • Epigenetics involve phenotypic changes without altering nucleotide sequences.
    • Methylation of cytosine (in DNA promoters) or amino acids (in histone proteins) affects transcription

    Imprinting and Gene Expression

    • Imprinted genes (one maternal or paternal copy is silenced)
    • Epigenetic changes during gamete development can affect offspring
    • Genetic conflict hypothesis: imprinting arose from competition for maternal resources during development

    DNA and Gene Editing

    • Radioactive isotopes (e.g., Phosphorus, Sulfur) can be used to study DNA and protein function
    • The experiment of Hershey and Chase demonstrated that DNA is the genetic material
    • Gene editing technologies (e.g., Knockout technology, CRISPR-Cas9) allow the manipulation of DNA
    • Random assortment and orientation of homologous chromosomes contribute to genetic variation

    Mendel's Laws

    • Mendel's Law of Segregation: alleles separate during gamete formation.
    • Mendel's Law of Independent Assortment: allele combinations of different genes are independent.

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    Description

    This quiz covers essential topics in molecular biology, focusing on the roles of DNA and RNA polymerases in catalyzing nucleotide linkage and the structure of nucleotides. Additionally, it discusses the conservation of DNA sequences and the regulation of the cell cycle by cyclins. Test your understanding of these critical concepts!

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