Molecular Biology: DNA Replication and Gene Expression

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Questions and Answers

During DNA replication, which enzymatic activity is responsible for excising misincorporated bases and replacing them with the correct ones?

  • 3' -> 5' exonuclease activity (correct)
  • Ligase activity
  • 5' -> 3' polymerase activity
  • 5' -> 3' exonuclease activity

In eukaryotic cells, pre-mRNA undergoes processing before translation. Which of the following modifications is essential for creating a translatable mRNA molecule?

  • The addition of amino acids
  • The removal of introns and splicing together of exons (correct)
  • The removal of exons
  • Replication

What is the crucial role of aminoacyl-tRNA synthetases in the process of translation?

  • To ensure each tRNA molecule is paired with the appropriate mRNA codon within the ribosome.
  • To initiate the process of transcription by binding to a promoter sequence on the DNA.
  • To catalyze the formation of peptide bonds between amino acids.
  • To attach the correct amino acid to its corresponding tRNA molecule based on the tRNA's anticodon. (correct)

Which of the following is true regarding the directionality of DNA polymerase activity during replication?

<p>It adds nucleotides to the 3' end of the growing strand. (B)</p> Signup and view all the answers

If a mutation occurs such that a stop codon is introduced prematurely in an mRNA sequence, what is the most likely consequence?

<p>The resulting protein will be shorter than intended due to the early termination of translation. (D)</p> Signup and view all the answers

Considering the semiconservative nature of DNA replication, what would be the composition of two new DNA molecules after one round of replication, starting from one double-stranded DNA molecule?

<p>Each new DNA molecule would consist of one original strand and one newly synthesized strand. (B)</p> Signup and view all the answers

What determines the sequence of amino acids in a protein?

<p>The sequence of bases in messenger RNA (mRNA). (A)</p> Signup and view all the answers

Where does translation take place?

<p>In the cytoplasm. (C)</p> Signup and view all the answers

What is the role of DNA ligase during DNA replication?

<p>To connect Okazaki fragments on the lagging strand. (A)</p> Signup and view all the answers

What is the start codon that signals the beginning of translation, and which amino acid does it code for in eukaryotes?

<p>AUG, codes for methionine (C)</p> Signup and view all the answers

During transcription, what region of a gene does RNA polymerase bind to, to initiate the creation of RNA?

<p>Promoter (C)</p> Signup and view all the answers

What is the name given to three consecutive bases in RNA that specify one amino acid in protein synthesis?

<p>Codon (D)</p> Signup and view all the answers

According to the central dogma, what is the correct sequence of information flow in a cell?

<p>DNA -&gt; RNA -&gt; Protein (D)</p> Signup and view all the answers

What is the function of a reading frame?

<p>It refers to the three ways to divide a DNA or RNA sequence into triplets. (A)</p> Signup and view all the answers

In the context of transcription, what is the role of the template strand?

<p>It is the DNA strand that provides the sequence used to synthesize the RNA transcript. (A)</p> Signup and view all the answers

Flashcards

Semiconservative replication

DNA replication where each new DNA molecule consists of one original strand and one newly synthesized strand.

Origin of replication

Specific DNA sequence where the double helix is pulled apart and replication begins.

Replication fork

The point where DNA strands separate during replication, creating a Y-shaped structure.

DNA polymerase

Enzyme that adds nucleotides to a growing DNA strand during replication.

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5' to 3' strand extension

The direction in which DNA polymerase adds nucleotides, from the 5' end to the 3' end.

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Proofreading function

The ability of DNA polymerase to correct errors by removing mismatched nucleotides.

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DNA ligase

Enzyme that joins DNA fragments together by catalyzing the formation of covalent bonds.

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Central Dogma

Central principle of molecular biology: DNA -> RNA -> Protein.

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Genetic code

The relationship between the base sequence in a gene and the amino acid sequence of the encoded protein.

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Triplet code

Three consecutive bases in RNA that specify one amino acid.

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Codon

A three-nucleotide sequence in mRNA that specifies a particular amino acid.

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Transcription

The synthesis of an RNA molecule from a DNA template.

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Template strand

The DNA strand that provides the pattern for RNA synthesis.

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Promoter

A special DNA sequence near the transcription start site where RNA polymerase binds.

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Pre-mRNA

Pre-mRNA that undergoes modifications before translation.

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Study Notes

  • RNA and DNA are polymers of nucleotides
  • DNA exists as a double-stranded helix
  • DNA replication depends on specific base pairing
  • DNA replication proceeds in two directions at many sites simultaneously
  • Genes control phenotypic traits through protein expression
  • Genetic information in codons translates into amino acid sequences
  • The genetic code dictates how codons translate into amino acids
  • Transcription produces genetic messages in the form of RNA
  • Eukaryotic RNA is processed into mRNA before leaving the nucleus
  • Transfer RNA molecules serve as interpreters during translation
  • Ribosomes build polypeptides
  • An initiation codon marks the start of an mRNA message
  • Elongation adds amino acids to the polypeptide chain until a stop codon terminates translation
  • Genetic information flows from DNA to RNA to protein

DNA Replication

  • DNA replication is semiconservative
  • DNA replication's specificity and fidelity arise from complementary base pairing in a DNA double helix
  • DNA double helix is pulled apart at the origin of replication, where replication reactions begin
  • The replication origin has two replication forks moving in opposite directions
  • DNA polymerase adds nucleotides only to the 3' end of a strand, working in the 5' -> 3' direction
  • DNA polymerase corrects mispairing mistakes via a proofreading function, excising the misincorporated base (3' -> 5' exonuclease activity)

Gene Expression - Overview

  • The Central Dogma is: DNA -> RNA -> protein
  • The genetic code links the base sequence in a gene (or RNA) and the amino acid sequence in the encoded protein
  • The genetic code is a triplet code where three consecutive RNA bases specify one amino acid in protein synthesis
  • Each meaningful triplet is a codon
  • There are 64 (4x4x4) base triplets

Gene Expression - Transcription and RNA Processing

  • Transcription synthesizes an RNA molecule from a DNA template
  • In eukaryotes, transcription occurs in the nucleus, mitochondria, and chloroplast
  • RNA synthesis uses one DNA strand as a template
  • The promoter is a special DNA sequence near the transcription start site
  • RNA polymerase binds to the exposed DNA template strand at the promoter
  • Transcription terminates at a special DNA sequence downstream of the coding portion of the RNA producing pre-mRNA
  • Pre-mRNA undergoes modifications to become mature, processed mRNA for translation

Gene Expression - Translation

  • Translation occurs on ribosomes in the cytoplasm
  • Two ribosome subunits assemble on an mRNA molecule exported from the nucleus
  • Transfer RNA (tRNA) molecules each carry a specific amino acid and anticodon
  • Codons have no punctuation or spaces
  • After incorporating an amino acid, the ribosome moves 3 bases to the next mRNA codon
  • A reading frame divides a DNA or RNA sequence into triplets
  • Translation stops when the ribosome encounters a STOP codon (UAA, UAG, UGA)
  • The ribosome, mRNA, and polypeptide detach from each other after reaching the stop codon

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