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Questions and Answers
What is the primary limitation of light microscopy that restricts its ability to distinguish between two closely positioned objects?
What is the primary limitation of light microscopy that restricts its ability to distinguish between two closely positioned objects?
- Wavelength of visible light (correct)
- Requirement for specialized preservation methods
- Magnification power of the lenses
- Inability to use staining techniques
Electron microscopy requires specialized preservation and staining techniques due to the need for high vacuum and electron beam interaction with the sample.
Electron microscopy requires specialized preservation and staining techniques due to the need for high vacuum and electron beam interaction with the sample.
True (A)
What is the approximate practical limit of resolution in light microscopy, expressed in micrometers?
What is the approximate practical limit of resolution in light microscopy, expressed in micrometers?
0.2 µm
The Cell Theory was proposed by Schleiden and Schwann after the visualization of cells was made possible by the development of high-quality __________ microscopes in the 19th century.
The Cell Theory was proposed by Schleiden and Schwann after the visualization of cells was made possible by the development of high-quality __________ microscopes in the 19th century.
Match each microscopy technique with its capability:
Match each microscopy technique with its capability:
Which technique is most suitable for quantifying the expression levels of a fluorescently labeled protein in a cell population and sorting cells based on these levels?
Which technique is most suitable for quantifying the expression levels of a fluorescently labeled protein in a cell population and sorting cells based on these levels?
Magnification and resolution are interchangeable terms; increasing magnification always results in a clearer image.
Magnification and resolution are interchangeable terms; increasing magnification always results in a clearer image.
Which cellular structure would be easiest to visualize using standard light microscopy techniques?
Which cellular structure would be easiest to visualize using standard light microscopy techniques?
What is the fundamental principle behind phase-contrast and differential-interference-contrast (DIC) microscopy?
What is the fundamental principle behind phase-contrast and differential-interference-contrast (DIC) microscopy?
Fixation, commonly required for staining cells with chemical dyes, preserves the cells in their living state, allowing for dynamic observation.
Fixation, commonly required for staining cells with chemical dyes, preserves the cells in their living state, allowing for dynamic observation.
What property of fluorescent molecules enables the detection of very small numbers of these molecules against a dark background?
What property of fluorescent molecules enables the detection of very small numbers of these molecules against a dark background?
Tissue samples are typically cut into thin ______, because they are too large to be visualized by microscopy techniques.
Tissue samples are typically cut into thin ______, because they are too large to be visualized by microscopy techniques.
Match the following methods with their typical application or principle:
Match the following methods with their typical application or principle:
In fluorescence microscopy, what is the primary purpose of using specific filters?
In fluorescence microscopy, what is the primary purpose of using specific filters?
Which of the following introduces fluorescent stains into cells for fluorescence microscopy?
Which of the following introduces fluorescent stains into cells for fluorescence microscopy?
What must happen to animal cells, given their colorless nature, in order to visualize them under light microscopy?
What must happen to animal cells, given their colorless nature, in order to visualize them under light microscopy?
What is the primary advantage of confocal microscopy over conventional fluorescence microscopy?
What is the primary advantage of confocal microscopy over conventional fluorescence microscopy?
Two-photon microscopy requires sectioning of the sample before imaging.
Two-photon microscopy requires sectioning of the sample before imaging.
What is the purpose of using glutaraldehyde and osmium tetroxide in electron microscopy sample preparation?
What is the purpose of using glutaraldehyde and osmium tetroxide in electron microscopy sample preparation?
In FRET, fluorescence occurs in protein 2 only if the excitation energy of the second protein matches the ______ of the first protein and the two proteins are in close proximity.
In FRET, fluorescence occurs in protein 2 only if the excitation energy of the second protein matches the ______ of the first protein and the two proteins are in close proximity.
Match the microscopy technique with its corresponding characteristic:
Match the microscopy technique with its corresponding characteristic:
What inherent limitation does conventional fluorescence microscopy possess that confocal microscopy aims to overcome?
What inherent limitation does conventional fluorescence microscopy possess that confocal microscopy aims to overcome?
In electron microscopy, what is the purpose of coating biological samples with electron-dense materials?
In electron microscopy, what is the purpose of coating biological samples with electron-dense materials?
What is the typical fixative used in electron microscopy and why is fixation required?
What is the typical fixative used in electron microscopy and why is fixation required?
Why does electron microscopy achieve higher resolution than light microscopy?
Why does electron microscopy achieve higher resolution than light microscopy?
Flow cytometry is limited to analyzing fixed cells due to the constraints of the laser technology used.
Flow cytometry is limited to analyzing fixed cells due to the constraints of the laser technology used.
What parameters, besides fluorescence, can a computer collect data on during flow cytometry?
What parameters, besides fluorescence, can a computer collect data on during flow cytometry?
In flow cytometry, cells can be separated using a cell sorter based on their _______ and _______ properties.
In flow cytometry, cells can be separated using a cell sorter based on their _______ and _______ properties.
Match each microscopy technique with its primary application:
Match each microscopy technique with its primary application:
Which technique is most suitable for visualizing the 3D structure of the external surface of a cell?
Which technique is most suitable for visualizing the 3D structure of the external surface of a cell?
What is the key advantage of using antibodies conjugated with gold particles in TEM?
What is the key advantage of using antibodies conjugated with gold particles in TEM?
What is the primary limitation of using chemical dyes to visualize cells compared to phase-contrast microscopy?
What is the primary limitation of using chemical dyes to visualize cells compared to phase-contrast microscopy?
Why is fluorescence microscopy particularly effective for detecting small numbers of molecules?
Why is fluorescence microscopy particularly effective for detecting small numbers of molecules?
How do phase-contrast and DIC microscopy enhance the visibility of transparent cells?
How do phase-contrast and DIC microscopy enhance the visibility of transparent cells?
What is the purpose of cutting tissue samples into thin sections before microscopy?
What is the purpose of cutting tissue samples into thin sections before microscopy?
Explain how fluorescent molecules are used in fluorescence microscopy to visualize specific cellular components.
Explain how fluorescent molecules are used in fluorescence microscopy to visualize specific cellular components.
In the context of light microscopy, what is the role of wavelength of light?
In the context of light microscopy, what is the role of wavelength of light?
Briefly describe how changes in protein location can be tracked over time using fluorescence microscopy, referencing the example of NFAT2.
Briefly describe how changes in protein location can be tracked over time using fluorescence microscopy, referencing the example of NFAT2.
What is the key difference between how chemical dyes and fluorescent molecules produce color in microscopy?
What is the key difference between how chemical dyes and fluorescent molecules produce color in microscopy?
Briefly explain why electron microscopy provides higher resolution compared to light microscopy.
Briefly explain why electron microscopy provides higher resolution compared to light microscopy.
Describe one key difference between scanning electron microscopy (SEM) and transmission electron microscopy (TEM) in terms of what cellular structures they image.
Describe one key difference between scanning electron microscopy (SEM) and transmission electron microscopy (TEM) in terms of what cellular structures they image.
What information can be gathered using flow cytometry, and how does it provide this information?
What information can be gathered using flow cytometry, and how does it provide this information?
Explain how antibodies conjugated with gold particles are utilized in TEM and what information they provide.
Explain how antibodies conjugated with gold particles are utilized in TEM and what information they provide.
What are the respective advantages and limitations between light microscopy and electron microscopy for visualizing cells?
What are the respective advantages and limitations between light microscopy and electron microscopy for visualizing cells?
Describe how cell sorters are coupled with flow cytometry and explain their function.
Describe how cell sorters are coupled with flow cytometry and explain their function.
How does confocal microscopy improve upon standard fluorescence microscopy?
How does confocal microscopy improve upon standard fluorescence microscopy?
Explain how FRET (Fluorescence Resonance Energy Transfer) is used to study protein interactions.
Explain how FRET (Fluorescence Resonance Energy Transfer) is used to study protein interactions.
Explain why achieving high magnification in light microscopy does not necessarily equate to high resolution. What is the practical limit of resolution in light microscopy?
Explain why achieving high magnification in light microscopy does not necessarily equate to high resolution. What is the practical limit of resolution in light microscopy?
What is the primary advantage of using 2-photon microscopy over standard fluorescence microscopy for deep tissue imaging?
What is the primary advantage of using 2-photon microscopy over standard fluorescence microscopy for deep tissue imaging?
Describe the key steps involved in preparing a sample for electron microscopy.
Describe the key steps involved in preparing a sample for electron microscopy.
How do gold-tagged antibodies aid in visualizing specific proteins using electron microscopy?
How do gold-tagged antibodies aid in visualizing specific proteins using electron microscopy?
A researcher is studying the movement of vesicles (approximately 0.1 µm in diameter) within a cell. Although the vesicles are smaller than the resolution limit of light microscopy, they can still be detected. How is this possible?
A researcher is studying the movement of vesicles (approximately 0.1 µm in diameter) within a cell. Although the vesicles are smaller than the resolution limit of light microscopy, they can still be detected. How is this possible?
A scientist wants to visualize the detailed structure of the nuclear pore complex (diameter approximately 120 nm). Which type of microscopy, light or electron, is most suitable for this purpose? Briefly explain your choice.
A scientist wants to visualize the detailed structure of the nuclear pore complex (diameter approximately 120 nm). Which type of microscopy, light or electron, is most suitable for this purpose? Briefly explain your choice.
What is the purpose of using vacuum in electron microscopy, and what challenges does it present?
What is the purpose of using vacuum in electron microscopy, and what challenges does it present?
Considering both resolution and sample preparation requirements, when would you choose light microscopy over electron microscopy?
Considering both resolution and sample preparation requirements, when would you choose light microscopy over electron microscopy?
What are the major challenges when it comes to visualizing cells and their components, and how do techniques like light and electron microscopy address these challenges?
What are the major challenges when it comes to visualizing cells and their components, and how do techniques like light and electron microscopy address these challenges?
Explain how optical sectioning is used in confocal microscopy to create 3D reconstructions of a sample.
Explain how optical sectioning is used in confocal microscopy to create 3D reconstructions of a sample.
You have a sample of cells and need to quantify the number of cells expressing a specific surface protein and then isolate those cells for further culture. Which technique would be most appropriate: light microscopy, electron microscopy, or flow cytometry? Explain your reasoning.
You have a sample of cells and need to quantify the number of cells expressing a specific surface protein and then isolate those cells for further culture. Which technique would be most appropriate: light microscopy, electron microscopy, or flow cytometry? Explain your reasoning.
You're trying to observe living cells, but need to enhance the contrast to see internal structures more clearly without damaging the cell or requiring extensive sample preparation. Which light microscopy technique would be best: standard brightfield, phase contrast, or fluorescence microscopy? Justify your answer.
You're trying to observe living cells, but need to enhance the contrast to see internal structures more clearly without damaging the cell or requiring extensive sample preparation. Which light microscopy technique would be best: standard brightfield, phase contrast, or fluorescence microscopy? Justify your answer.
You perform a light microscopy experiment and notice that while you can detect a small fluorescently labeled protein within a cell, the image appears blurry even at high magnification. What could explain this?
You perform a light microscopy experiment and notice that while you can detect a small fluorescently labeled protein within a cell, the image appears blurry even at high magnification. What could explain this?
Flashcards
Cell Visualization
Cell Visualization
Techniques used by cell biologists to observe individual cells.
Light Microscopy
Light Microscopy
Uses visible light to magnify and view cells and their structures.
Resolution
Resolution
The ability to distinguish two close objects as separate entities.
Magnification
Magnification
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Cell Theory
Cell Theory
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Challenges of Cell Visualization
Challenges of Cell Visualization
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Electron Microscopy
Electron Microscopy
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Flow Cytometry
Flow Cytometry
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Animal Cell Visibility
Animal Cell Visibility
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Phase-Contrast & DIC Microscopy
Phase-Contrast & DIC Microscopy
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Cell Staining
Cell Staining
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Tissue Sectioning
Tissue Sectioning
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Hematoxylin and Eosin
Hematoxylin and Eosin
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Fluorescence Microscopy
Fluorescence Microscopy
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Fluorescence Filters
Fluorescence Filters
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Introducing Fluorescent Stains
Introducing Fluorescent Stains
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Confocal Microscopy
Confocal Microscopy
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3D Reconstruction in Microscopy
3D Reconstruction in Microscopy
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FRET (Fluorescence Resonance Energy Transfer)
FRET (Fluorescence Resonance Energy Transfer)
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Two-Photon Microscopy
Two-Photon Microscopy
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Resolution of Electron Microscopy
Resolution of Electron Microscopy
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Sample Preparation for EM
Sample Preparation for EM
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Staining in Electron Microscopy
Staining in Electron Microscopy
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Scanning Electron Microscopy (SEM)
Scanning Electron Microscopy (SEM)
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Transmission Electron Microscopy (TEM)
Transmission Electron Microscopy (TEM)
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Why Electron Beam Higher Resolution?
Why Electron Beam Higher Resolution?
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What Data is Collected in Flow Cytometry?
What Data is Collected in Flow Cytometry?
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Cell Sorter Purpose
Cell Sorter Purpose
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Light Microscopy Limitation
Light Microscopy Limitation
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Flow Cytometry Uses
Flow Cytometry Uses
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Phase-contrast microscopy
Phase-contrast microscopy
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Differential-interference-contrast (DIC)
Differential-interference-contrast (DIC)
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Chemical dyes in microscopy
Chemical dyes in microscopy
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Fluorescent Molecules
Fluorescent Molecules
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Specific Filters in Microscopy
Specific Filters in Microscopy
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Methods to Add Fluorescent Stains
Methods to Add Fluorescent Stains
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Light Microscopy Resolution Limit
Light Microscopy Resolution Limit
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Resolution (Microscopy)
Resolution (Microscopy)
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Why use microscopy?
Why use microscopy?
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Light Microscope Basics
Light Microscope Basics
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Contrast
Contrast
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Sensitivity
Sensitivity
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Fluorescence Microscopy Basics
Fluorescence Microscopy Basics
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3D Reconstruction
3D Reconstruction
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EM Sample Prep
EM Sample Prep
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Electron-Dense Stains
Electron-Dense Stains
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SEM (Scanning Electron Microscopy)
SEM (Scanning Electron Microscopy)
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TEM (Transmission Electron Microscopy)
TEM (Transmission Electron Microscopy)
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Laser Scatter
Laser Scatter
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Fluorescence Intensity
Fluorescence Intensity
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DNA Staining in Flow Cytometry
DNA Staining in Flow Cytometry
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Antibodies with Gold Particles
Antibodies with Gold Particles
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Preservation Techniques for EM
Preservation Techniques for EM
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Study Notes
Light Microscopy
- Cellular structures and most animal cells are too small to see with the naked eye and require magnification for examination.
- Resolution in light microscopy depends on the wavelength of the light.
Visualizing Cells
- Visualizing cells and their subcellular compartments is crucial in cell biology, necessitating various techniques.
How to Visualize Cells
- Animal cells must be visualized via techniques due to them being colorless and translucent.
Fluorescence Microscopy
- First barrier filters let through narrow ranges of light, for example only blue light from 450-490 nm.
- Beam-splitting mirrors reflect light below a certain wavelenght (510 nm), but transmit light above that.
- Second barrier filters cuts out unwanted fluorescent wave signals, but allow others through (520-560 nm).
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