Microscopy Techniques and Cell Theory

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Questions and Answers

What is the primary limitation of light microscopy that restricts its ability to distinguish between two closely positioned objects?

  • Wavelength of visible light (correct)
  • Requirement for specialized preservation methods
  • Magnification power of the lenses
  • Inability to use staining techniques

Electron microscopy requires specialized preservation and staining techniques due to the need for high vacuum and electron beam interaction with the sample.

True (A)

What is the approximate practical limit of resolution in light microscopy, expressed in micrometers?

0.2 µm

The Cell Theory was proposed by Schleiden and Schwann after the visualization of cells was made possible by the development of high-quality __________ microscopes in the 19th century.

<p>light</p> Signup and view all the answers

Match each microscopy technique with its capability:

<p>Light microscopy = Visualizing large-scale cellular structures with limited resolution. For eg, plant cell, animal cell, bacterium, mitochondriaFor eg: nucleus, Electron microscopy = Achieving higher resolution imaging with special preservation and staining. For eg; virus ribosomes, globular protein, small molecule and atom Flow cytometry = Measuring levels of specific biomolecules and sorting cells based on expression</p> Signup and view all the answers

Which technique is most suitable for quantifying the expression levels of a fluorescently labeled protein in a cell population and sorting cells based on these levels?

<p>Flow cytometry (D)</p> Signup and view all the answers

Magnification and resolution are interchangeable terms; increasing magnification always results in a clearer image.

<p>False (B)</p> Signup and view all the answers

Which cellular structure would be easiest to visualize using standard light microscopy techniques?

<p>Mitochondria (0.5 µm) (A)</p> Signup and view all the answers

What is the fundamental principle behind phase-contrast and differential-interference-contrast (DIC) microscopy?

<p>The alteration in the phase of light waves as they traverse the cell. (A)</p> Signup and view all the answers

Fixation, commonly required for staining cells with chemical dyes, preserves the cells in their living state, allowing for dynamic observation.

<p>False (B)</p> Signup and view all the answers

What property of fluorescent molecules enables the detection of very small numbers of these molecules against a dark background?

<p>emission of light at a longer wavelength after absorption</p> Signup and view all the answers

Tissue samples are typically cut into thin ______, because they are too large to be visualized by microscopy techniques.

<p>sections</p> Signup and view all the answers

Match the following methods with their typical application or principle:

<p>Phase-contrast microscopy = Visualization of live, unmanipulated cells based on changes in light phase Chemical dyes = Highlighting details in cells via color absorption, typically requiring fixation Fluorescence microscopy = Detection of fluorescent molecules against a dark background using specific light wavelengths Tissue sectioning = Preparation of thin slices of samples for microscopy to allow light passage</p> Signup and view all the answers

In fluorescence microscopy, what is the primary purpose of using specific filters?

<p>To selectively block the excitation light and allow the emitted fluorescence to pass through. (A)</p> Signup and view all the answers

Which of the following introduces fluorescent stains into cells for fluorescence microscopy?

<p>Chemical dyes, fluorescent molecules attached to antibodies, or intrinsically fluorescent proteins. (A)</p> Signup and view all the answers

What must happen to animal cells, given their colorless nature, in order to visualize them under light microscopy?

<p>They must be stained or viewed using methods like phase-contrast microscopy.</p> Signup and view all the answers

What is the primary advantage of confocal microscopy over conventional fluorescence microscopy?

<p>Confocal microscopy reduces out-of-focus fluorescence, resulting in sharper optical sections. (A)</p> Signup and view all the answers

Two-photon microscopy requires sectioning of the sample before imaging.

<p>False (B)</p> Signup and view all the answers

What is the purpose of using glutaraldehyde and osmium tetroxide in electron microscopy sample preparation?

<p>fixation</p> Signup and view all the answers

In FRET, fluorescence occurs in protein 2 only if the excitation energy of the second protein matches the ______ of the first protein and the two proteins are in close proximity.

<p>emission</p> Signup and view all the answers

Match the microscopy technique with its corresponding characteristic:

<p>Confocal Microscopy = Optical sectioning Electron Microscopy = High resolution via electron beam FRET = Detection of protein proximity Two-Photon Microscopy = Deeper tissue penetration</p> Signup and view all the answers

What inherent limitation does conventional fluorescence microscopy possess that confocal microscopy aims to overcome?

<p>Detection of fluorescence originating from regions outside the focal plane. (A)</p> Signup and view all the answers

In electron microscopy, what is the purpose of coating biological samples with electron-dense materials?

<p>To provide contrast by scattering electrons. (A)</p> Signup and view all the answers

What is the typical fixative used in electron microscopy and why is fixation required?

<p>glutaraldehyde</p> Signup and view all the answers

Why does electron microscopy achieve higher resolution than light microscopy?

<p>Electrons have a significantly shorter wavelength compared to photons of light. (C)</p> Signup and view all the answers

Flow cytometry is limited to analyzing fixed cells due to the constraints of the laser technology used.

<p>False (B)</p> Signup and view all the answers

What parameters, besides fluorescence, can a computer collect data on during flow cytometry?

<p>laser scatter</p> Signup and view all the answers

In flow cytometry, cells can be separated using a cell sorter based on their _______ and _______ properties.

<p>fluorescence, scatter</p> Signup and view all the answers

Match each microscopy technique with its primary application:

<p>Scanning Electron Microscopy (SEM) = Imaging external surface structures in 3D Transmission Electron Microscopy (TEM) = Imaging internal cellular structures with high resolution Flow Cytometry = Analyzing and sorting cells based on fluorescence and scatter properties</p> Signup and view all the answers

Which technique is most suitable for visualizing the 3D structure of the external surface of a cell?

<p>Scanning electron microscopy (SEM) (C)</p> Signup and view all the answers

What is the key advantage of using antibodies conjugated with gold particles in TEM?

<p>Allowing localization of specific molecules within the cell (A)</p> Signup and view all the answers

What is the primary limitation of using chemical dyes to visualize cells compared to phase-contrast microscopy?

<p>Chemical dyes generally require fixation, which kills the cells, while phase-contrast microscopy allows for visualization of live cells.</p> Signup and view all the answers

Why is fluorescence microscopy particularly effective for detecting small numbers of molecules?

<p>Fluorescence microscopy allows detection of very small numbers of fluorescent molecules because they are viewed against a dark background, improving contrast.</p> Signup and view all the answers

How do phase-contrast and DIC microscopy enhance the visibility of transparent cells?

<p>They exploit changes in the phase of light waves as they pass through the cell to create contrast, making the cell structures more visible.</p> Signup and view all the answers

What is the purpose of cutting tissue samples into thin sections before microscopy?

<p>Tissue samples are cut into thin sections because they are too large to be visualized effectively by most microscopy techniques.</p> Signup and view all the answers

Explain how fluorescent molecules are used in fluorescence microscopy to visualize specific cellular components.

<p>Fluorescent molecules absorb light at one wavelength and emit light at a longer wavelength. Using specific filters, a cell can be illuminated with light of one color, and visualized at the fluorescence wavelength. These molecules can be dyes, attached to antibodies, or intrinsically fluorescent proteins such as GFP.</p> Signup and view all the answers

In the context of light microscopy, what is the role of wavelength of light?

<p>The wavelength of light determines the resolution of the microscope. Shorter wavelengths provide higher resolution, allowing finer details to be observed.</p> Signup and view all the answers

Briefly describe how changes in protein location can be tracked over time using fluorescence microscopy, referencing the example of NFAT2.

<p>Fluorescently tagged proteins, like NFAT2, can be observed under a fluorescence microscope as they move within a cell over time. By taking images at different time points, researchers can track the protein's location, such as its movement into the nucleus upon cell stimulation.</p> Signup and view all the answers

What is the key difference between how chemical dyes and fluorescent molecules produce color in microscopy?

<p>Chemical dyes produce color by absorbing specific wavelengths of light, while fluorescent molecules absorb light at one wavelength and emit light of a longer wavelength.</p> Signup and view all the answers

Briefly explain why electron microscopy provides higher resolution compared to light microscopy.

<p>Electron microscopy uses electron beams which have much smaller wavelengths than light, allowing for greater resolution.</p> Signup and view all the answers

Describe one key difference between scanning electron microscopy (SEM) and transmission electron microscopy (TEM) in terms of what cellular structures they image.

<p>SEM images external surfaces, while TEM images internal structures.</p> Signup and view all the answers

What information can be gathered using flow cytometry, and how does it provide this information?

<p>Flow cytometry can collect fluorescence data (color, intensity), as well as laser scatter (reflecting size, shape, and internal architecture) as cells pass through a laser in an aqueous stream.</p> Signup and view all the answers

Explain how antibodies conjugated with gold particles are utilized in TEM and what information they provide.

<p>Antibodies conjugated with gold particles allow localization of specific molecules within a cell.</p> Signup and view all the answers

What are the respective advantages and limitations between light microscopy and electron microscopy for visualizing cells?

<p>Light microscopy can image large-scale cellular structures but resolution is limited, while electron microscopy allows much higher resolution than light microscopy but requires special preservation and staining techniques.</p> Signup and view all the answers

Describe how cell sorters are coupled with flow cytometry and explain their function.

<p>Cell sorters can be coupled with flow cytometry to allow cells to be separated based on fluorescence and scatter properties.</p> Signup and view all the answers

How does confocal microscopy improve upon standard fluorescence microscopy?

<p>Confocal microscopy limits detection to the focal plane using a scanning laser and pinhole apertures, reducing out-of-focus blur and improving resolution, whereas standard fluorescence microscopy captures fluorescence from the entire sample.</p> Signup and view all the answers

Explain how FRET (Fluorescence Resonance Energy Transfer) is used to study protein interactions.

<p>FRET uses two fluorescent proteins. If they are in close proximity, excitation of the first protein results in fluorescence of the second, indicating interaction. If the proteins are not interacting, the second protein will not fluoresce.</p> Signup and view all the answers

Explain why achieving high magnification in light microscopy does not necessarily equate to high resolution. What is the practical limit of resolution in light microscopy?

<p>Magnification enlarges the image, but resolution is the ability to distinguish between two close objects. You can magnify a blurry image, but it doesn't make it clearer. The practical limit of resolution in light microscopy is approximately 0.2 µm.</p> Signup and view all the answers

What is the primary advantage of using 2-photon microscopy over standard fluorescence microscopy for deep tissue imaging?

<p>2-photon microscopy uses two long-wave photons to excite the fluorophore, allowing for deeper penetration into the sample without the need for physical sectioning. This is advantageous because there is less photobleaching and photodamage.</p> Signup and view all the answers

Describe the key steps involved in preparing a sample for electron microscopy.

<p>Sample preparation for electron microscopy involves fixation (using chemicals like glutaraldehyde and osmium tetroxide), dehydration, and slicing into ultra-thin sections. Samples are stained with electron-dense materials to enhance contrast.</p> Signup and view all the answers

How do gold-tagged antibodies aid in visualizing specific proteins using electron microscopy?

<p>Gold-tagged antibodies bind to specific proteins, and because gold is electron-dense, it scatters electrons strongly, making the location of the protein visible as a dark spot in the electron microscope.</p> Signup and view all the answers

A researcher is studying the movement of vesicles (approximately 0.1 µm in diameter) within a cell. Although the vesicles are smaller than the resolution limit of light microscopy, they can still be detected. How is this possible?

<p>Even if an object is smaller than the limit of resolution, it can still be detected if it emits light. Fluorescent molecules attached to the vesicles can allow their detection, even though their actual size cannot be resolved.</p> Signup and view all the answers

A scientist wants to visualize the detailed structure of the nuclear pore complex (diameter approximately 120 nm). Which type of microscopy, light or electron, is most suitable for this purpose? Briefly explain your choice.

<p>Electron microscopy is more suitable. The nuclear pore complex is smaller than the resolution limit of light microscopy (0.2 µm or 200 nm). Electron microscopy provides higher resolution, allowing visualization of structures at this scale.</p> Signup and view all the answers

What is the purpose of using vacuum in electron microscopy, and what challenges does it present?

<p>A vacuum is required in electron microscopy to prevent electrons from colliding with air molecules, which would scatter the beam and reduce resolution. This presents a challenge because the sample must be dry, which can cause artifacts.</p> Signup and view all the answers

Considering both resolution and sample preparation requirements, when would you choose light microscopy over electron microscopy?

<p>Light microscopy is preferable when observing live cells or when high resolution is not critical, as it avoids the harsh fixation and dehydration processes required for electron microscopy.</p> Signup and view all the answers

What are the major challenges when it comes to visualizing cells and their components, and how do techniques like light and electron microscopy address these challenges?

<p>Cells are small and transparent making them difficult to see without assistance. Light microscopy uses magnification and chemical stains to solve this, and electron microscopy provides even higher resolution.</p> Signup and view all the answers

Explain how optical sectioning is used in confocal microscopy to create 3D reconstructions of a sample.

<p>Confocal microscopy captures a series of images at different focal depths (optical sections) within the sample. These sections are then computationally combined to generate a three-dimensional reconstruction of the sample's structure.</p> Signup and view all the answers

You have a sample of cells and need to quantify the number of cells expressing a specific surface protein and then isolate those cells for further culture. Which technique would be most appropriate: light microscopy, electron microscopy, or flow cytometry? Explain your reasoning.

<p>Flow cytometry would be most appropriate. It allows for measuring the levels of specific biomolecules and ions using fluorescent labels and for sorting cells based on expression levels.</p> Signup and view all the answers

You're trying to observe living cells, but need to enhance the contrast to see internal structures more clearly without damaging the cell or requiring extensive sample preparation. Which light microscopy technique would be best: standard brightfield, phase contrast, or fluorescence microscopy? Justify your answer.

<p>Phase contrast microscopy would be best. It enhances the contrast of transparent specimens without the need for staining, which can be toxic to living cells, and does not require the addition of fluorescent labels.</p> Signup and view all the answers

You perform a light microscopy experiment and notice that while you can detect a small fluorescently labeled protein within a cell, the image appears blurry even at high magnification. What could explain this?

<p>The blurriness is likely due to the limitations of resolution in light microscopy. Even though the fluorescent label allows detection, the labeled objects may be closer together than the resolution limit (0.2 µm), causing them to appear as a single blurry object.</p> Signup and view all the answers

Flashcards

Cell Visualization

Techniques used by cell biologists to observe individual cells.

Light Microscopy

Uses visible light to magnify and view cells and their structures.

Resolution

The ability to distinguish two close objects as separate entities.

Magnification

The process of enlarging the apparent size of an object.

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Cell Theory

States that the cell is the fundamental unit of life.

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Challenges of Cell Visualization

Contrast, sensitivity, and high resolution.

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Electron Microscopy

Uses beams of electrons to create high-resolution images of cells and their components.

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Flow Cytometry

Uses fluorescent labels to measure and sort cells based on specific characteristics.

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Animal Cell Visibility

Animal cells are essentially colorless and translucent, making them nearly invisible under light microscopy without special techniques.

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Phase-Contrast & DIC Microscopy

Microscopy techniques that use the change in phase of light waves passing through a cell to visualize live, unmanipulated cells with limited detail.

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Cell Staining

Staining cells with chemical dyes can reveal cellular details, but typically requires fixation, which kills and preserves the cells.

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Tissue Sectioning

Tissue samples must be cut into thin sections to be visualized using most microscopy techniques.

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Hematoxylin and Eosin

A commonly used dye combination for staining tissue samples that can be observed with a microscope.

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Fluorescence Microscopy

Fluorescent molecules absorb light at one wavelength and emit light at a longer wavelength, allowing for detection of very small numbers of these molecules against a dark background.

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Fluorescence Filters

Specific filters are used to illuminate a cell with light of one color and visualize it at the fluorescence wavelength.

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Introducing Fluorescent Stains

Fluorescent stains can be introduced via chemical dyes, antibodies, or intrinsically fluorescent proteins like GFP.

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Confocal Microscopy

Uses a scanning laser and pinhole apertures to limit detection to the focal plane, creating optical sections with better resolution than standard fluorescence microscopy.

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3D Reconstruction in Microscopy

Acquires images from various focal planes (z-sections) to reconstruct a 3D image of the sample.

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FRET (Fluorescence Resonance Energy Transfer)

A technique using two fluorescent proteins; energy transfer only occurs if the proteins are in close proximity.

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Two-Photon Microscopy

Uses two long-wave photons to excite a fluorophore, allowing deeper penetration into the sample.

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Resolution of Electron Microscopy

The resolution achieved with electron microscopy is far greater than that of light microscopy.

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Sample Preparation for EM

Cells must be fixed, desiccated, and sliced into ultra-thin sections for electron microscopy.

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Staining in Electron Microscopy

Electron-dense materials used to stain cells for electron microscopy.

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Scanning Electron Microscopy (SEM)

Images the outside surface of a sample; requires staining, but no sectioning.

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Transmission Electron Microscopy (TEM)

Images internal structures of a sample; requires sectioning.

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Why Electron Beam Higher Resolution?

It has a much smaller wavelength than a photon, allowing for greater resolution.

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What Data is Collected in Flow Cytometry?

Color and intensity of fluorescence, laser scatter (size/shape/internal architecture)

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Cell Sorter Purpose

To separate cells based on their fluorescence and scatter properties.

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Light Microscopy Limitation

Light microscopy resolution is limited by the wavelength of light.

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Flow Cytometry Uses

To measure levels of specific biomolecules and ions, and to sort cells based on expression levels.

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Phase-contrast microscopy

A technique using change in phase of light waves passing through a cell.

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Differential-interference-contrast (DIC)

A microscopy technique using the change in phase of light waves.

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Chemical dyes in microscopy

Dyes used to reveal details of cells.

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Fluorescent Molecules

Molecules that absorb light at one wavelength and emit light at a longer wavelength.

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Specific Filters in Microscopy

Using light of one color to illuminate a cell and visualizing it at the fluorescence wavelength.

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Methods to Add Fluorescent Stains

Ways to introduce fluorescent stains into cells.

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Light Microscopy Resolution Limit

The practical limit of detail visible using light microscopy is about 0.2 μm.

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Resolution (Microscopy)

The ability to distinguish two objects that are very close together as separate entities.

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Why use microscopy?

Cells are the fundamental units of life and can only be seen with magnification.

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Light Microscope Basics

Uses visible light to view cells; limited resolution.

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Contrast

Brightness or darkness of an object in an image which defines the quality.

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Sensitivity

The power or capacity to identify slight differences, it is the act or capacity of responding to slight external stimuli or influences.

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Fluorescence Microscopy Basics

Uses fluorescent dyes to visualize specific structures; higher sensitivity than regular light microscopy.

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3D Reconstruction

Acquiring images from multiple focal planes (z-sections) to construct a three-dimensional representation of a sample.

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EM Sample Prep

Sample must be treated with fixatives and desiccated.

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Electron-Dense Stains

Heavy metal salts are used to add contrast to biological samples for visualization.

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SEM (Scanning Electron Microscopy)

Microscopy that images external surfaces using an electron beam.

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TEM (Transmission Electron Microscopy)

Microscopy that images internal structures using an electron beam.

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Laser Scatter

Data reflecting a cell's size, shape, and internal complexity, gathered by flow cytometry.

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Fluorescence Intensity

The intensity of light emitted by fluorescent molecules in flow cytometry.

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DNA Staining in Flow Cytometry

The use of dyes like propidium iodide to assess cell cycle phases.

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Antibodies with Gold Particles

Labels attached to antibodies enabling the location of specific molecules within a cell during TEM.

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Preservation Techniques for EM

Special handling to maintain and preserve cell structure during electron microscopy.

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Study Notes

Light Microscopy

  • Cellular structures and most animal cells are too small to see with the naked eye and require magnification for examination.
  • Resolution in light microscopy depends on the wavelength of the light.

Visualizing Cells

  • Visualizing cells and their subcellular compartments is crucial in cell biology, necessitating various techniques.

How to Visualize Cells

  • Animal cells must be visualized via techniques due to them being colorless and translucent.

Fluorescence Microscopy

  • First barrier filters let through narrow ranges of light, for example only blue light from 450-490 nm.
  • Beam-splitting mirrors reflect light below a certain wavelenght (510 nm), but transmit light above that.
  • Second barrier filters cuts out unwanted fluorescent wave signals, but allow others through (520-560 nm).

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