Mechanics of Cell Signals and Techniques
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Questions and Answers

Which of the following best describes macroscopic mechanical signals?

  • Stiffness of cell membranes
  • Blood pressure and lung expansion (correct)
  • Forces applied by individual cells
  • Traction forces experienced by cells
  • What is the purpose of using micropillars in cell mechanics?

  • To assess overall cellular stiffness
  • To evaluate lung expansion
  • To monitor cell traction forces (correct)
  • To measure blood pressure
  • What phenomenon does FRET allow researchers to study in the context of cellular behavior?

  • Changes in mechanical rigidity of tissues
  • Variations in blood flow during physical activity
  • Interactions between Src kinases and their substrates (correct)
  • Responses of cells to external temperature changes
  • Which technique uses laser tweezers to apply force on a cell membrane?

    <p>Integrative Tension Sensor (A)</p> Signup and view all the answers

    What type of mechanical signal is characterized by the stiffness of bones and forces during walking?

    <p>Macroscopic mechanical signals (B)</p> Signup and view all the answers

    Which cellular measurement technique involves imaging cell adhesive force at a single molecule level?

    <p>Cell adhesive force imaging (C)</p> Signup and view all the answers

    What happens to FRET responses when mechanical stimulation is applied to a cell?

    <p>FRET responses indicate directional wave propagation (D)</p> Signup and view all the answers

    What best characterizes the microscopic mechanical signals observed in cells?

    <p>Stiffness and forces applied by individual cells (A)</p> Signup and view all the answers

    What does the force pattern in mechanobiology primarily consist of?

    <p>Individual clusters produced by focal adhesions (D)</p> Signup and view all the answers

    In Atomic Force Microscopy (AFM), how is cantilever deflection measured?

    <p>Through the reflection of a laser beam off the cantilever (B)</p> Signup and view all the answers

    What is a primary advantage of confocal microscopy over widefield microscopy?

    <p>It produces sharper images with higher resolution. (C)</p> Signup and view all the answers

    What significant contribution did Dr. Arthur Ashkin make to mechanobiology?

    <p>Development of optical tweezers for biological applications (D)</p> Signup and view all the answers

    Which of the following describes the function of a pinhole in confocal microscopy?

    <p>It blocks out-of-focus light. (D)</p> Signup and view all the answers

    What represents macroscopic mechanical signals?

    <p>Blood pressure, lung expansion, and walking forces (D)</p> Signup and view all the answers

    Which of the following is NOT a part of the molecular mechanisms of mechanotransduction?

    <p>Optical tweezers (C)</p> Signup and view all the answers

    In the context of image processing, what does a mean filter primarily accomplish?

    <p>It reduces noise within the image. (A)</p> Signup and view all the answers

    Which cell behavior is NOT typically associated with mechanobiology?

    <p>Cell division (B)</p> Signup and view all the answers

    What is the primary cause of diffraction in microscopy?

    <p>Interaction of light with small particles or features. (A)</p> Signup and view all the answers

    Which imaging technique focuses on capturing sharp images of a specific plane rather than the entire sample depth?

    <p>Confocal microscopy (C)</p> Signup and view all the answers

    What kind of signals do microscopes typically focus on in studying mechanobiology?

    <p>Microscopic mechanical signals from cells (D)</p> Signup and view all the answers

    In which organ systems is mechanobiology particularly relevant?

    <p>Cardiovascular, bone, cartilage, and liver systems (D)</p> Signup and view all the answers

    Which type of filter is used in image processing to remove outliers and excessive noise from images?

    <p>Median filter (A)</p> Signup and view all the answers

    During image processing, converting an image from grayscale to binary primarily serves what purpose?

    <p>To identify key features in the image. (A)</p> Signup and view all the answers

    What role does resolution play in microscopy?

    <p>It defines the ability to distinguish between two closely spaced objects. (C)</p> Signup and view all the answers

    What is the primary mechanism used in STED microscopy to de-excite a fluorescent probe?

    <p>Stimulated emission (C)</p> Signup and view all the answers

    What must happen in STORM for precise localization of fluorescent molecules?

    <p>Molecules must emit enough photons consistently. (C)</p> Signup and view all the answers

    What criterion is necessary for the separation of fluorescent molecules in STORM?

    <p>More than 250 nanometers apart (A)</p> Signup and view all the answers

    Which Nobel Prize category was awarded for the development related to STED microscopy?

    <p>Nobel Prize in Chemistry 2014 (D)</p> Signup and view all the answers

    In STED microscopy, what is the initial state of a fluorescent probe before excitation?

    <p>Ground state (D)</p> Signup and view all the answers

    What is a significant challenge in STORM microscopy?

    <p>Avoiding fluorescence from non-target molecules (A)</p> Signup and view all the answers

    What happens to a photoswitchable molecule in STORM after approximately 250 nanometers separation?

    <p>It enters a dark state. (B)</p> Signup and view all the answers

    Which aspect distinguishes STED from STORM microscopy?

    <p>Emphasis on stimulated emission depletion (A)</p> Signup and view all the answers

    What defines the diffraction limit according to the Rayleigh criterion?

    <p>Two images are just resolvable when the center of one is over the minimum of the other. (C)</p> Signup and view all the answers

    What is the primary purpose of super-resolution microscopy?

    <p>To break the diffraction barrier and improve optical resolution. (D)</p> Signup and view all the answers

    How is resolution calculated using the formula given in the content?

    <p>r = 0.61λ / NA (A)</p> Signup and view all the answers

    What is the resolution achieved using a 10x objective with NA=0.25 and λ=550nm?

    <p>1.34µm (D)</p> Signup and view all the answers

    What distinguishes PALM from other microscopy techniques?

    <p>It employs photoactivatable fluorophores for resolution of details. (D)</p> Signup and view all the answers

    Which microscopy technique specifically resolves adjacent fluorophores?

    <p>PALM microscopy (A)</p> Signup and view all the answers

    What happens to fluorophores once activated by lasers in PALM microscopy?

    <p>They emit for a short time but then bleach. (A)</p> Signup and view all the answers

    Which of the following statements best describes the Airy disk?

    <p>It consists of a central bright spot and surrounding rings. (C)</p> Signup and view all the answers

    Flashcards

    Mechanical signals

    Signals transmitted through physical forces, such as pressure and tension.

    Microscopic mechanical signals

    Tiny mechanical signals, like forces from cells and cell stiffness.

    Macroscopic mechanical signals

    Large-scale mechanical signals, like blood pressure and bone stiffness.

    Traction Force Microscopy

    A technique to measure the forces cells exert.

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    Micropillars

    Small pillars used to measure cell traction forces.

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    FRET

    Technique that measures changes in protein interactions.

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    Integrative Tension Sensor (ITS)

    A tool for imaging cell adhesive force.

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    Cell adhesive force

    Force cells use to stick to surfaces.

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    Force Pattern

    A pattern of individual clusters created by focal adhesions, reflecting the force distribution applied by cells.

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    AFM Microindentation

    A technique using an Atomic Force Microscope to measure the stiffness of materials by indenting their surface.

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    Profile Microindentation

    A method of measuring cell stiffness by indenting their surface with a sharp probe, creating a profile of the indentation.

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    Optical Tweezers

    A tool that uses focused laser beams to trap and manipulate microscopic objects like cells, using light to grab and move things.

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    Optical Trapping in Vivo

    The use of optical tweezers within a living organism, allowing for manipulation and analysis of cells and molecules inside living systems.

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    Mechanosensing Molecules

    Molecules that detect and respond to mechanical forces, bridging the gap between physical forces and cellular responses.

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    Mechanobiology of Cell Behavior

    The study of how mechanical forces influence cell behavior, such as movement, shape-shifting, and interactions with other cells.

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    Mechanobiology of Organ Systems

    The study of how mechanical forces affect the development, function, and health of various organs, like the heart, bones, and brain.

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    Pseudo-colour

    A technique that assigns colors to grayscale images to highlight specific features or patterns.

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    Grayscale to Binary

    Converting a grayscale image into a black and white image by setting a threshold value. Pixels above the threshold become white, and below become black.

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    Mean Filter

    A smoothing filter that replaces each pixel with the average value of its surrounding pixels, reducing noise and blurring sharp edges.

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    Median Filter

    A smoothing filter that replaces each pixel with the median value of its surrounding pixels, effectively removing noise while preserving edges.

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    Laplace Filter

    An edge detection filter that highlights sharp changes in image intensity, identifying boundaries and features.

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    Confocal Microscopy

    A technique that uses a pinhole to block out-of-focus light, providing high-resolution images of specific planes within a thick sample.

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    Resolution

    The ability to distinguish between two closely spaced objects in an image.

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    Airy Disk

    The diffraction pattern of light passing through a circular aperture, affecting the resolution of a microscope.

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    Diffraction Limit

    The smallest resolvable distance between two points in an image, determined by the wavelength of light and the numerical aperture of the lens.

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    Rayleigh Criterion

    Two points are resolvable when the center of one's diffraction pattern overlaps with the first minimum of the other's.

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    Numerical Aperture (NA)

    A measure of a lens' ability to gather light, influencing resolution.

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    Super-resolution Microscopy

    A technique that overcomes the diffraction limit, allowing images with resolution down to 5-20 nm.

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    PALM (Photo-activated Localization Microscopy)

    A super-resolution method that uses photoactivatable fluorophores to visualize tightly packed molecules.

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    STED (Stimulated Emission Depletion Microscopy)

    A super-resolution method that uses laser beams to create a donut-shaped region of excitation, allowing for higher spatial resolution.

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    Single-molecule Spectroscopy

    A technique that allows the study of individual molecules by analyzing their emitted light.

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    STED Microscopy

    A super-resolution microscopy technique that utilizes stimulated emission depletion (STED) to improve image resolution beyond the diffraction limit. In STED, a laser beam is used to excite fluorescent molecules, while a second, donut-shaped beam de-excites the molecules in the surrounding area, resulting in a smaller, sharper fluorescent spot.

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    What is the purpose of the donut shaped laser in STED microscopy?

    The donut-shaped laser beam in STED microscopy serves to de-excite fluorescent molecules in the surrounding area of the targeted region. This depletion process results in a smaller, sharper fluorescent spot, effectively improving image resolution beyond the diffraction limit.

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    STORM Microscopy

    A super-resolution microscopy technique that utilizes stochastic optical reconstruction microscopy (STORM) to achieve resolutions beyond the diffraction limit. In STORM, photoswitchable fluorescent molecules are activated and deactivated randomly, allowing researchers to pinpoint their locations with high accuracy.

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    What is the role of photoswitchable molecules in STORM?

    Photoswitchable molecules are essential in STORM because they allow researchers to activate and deactivate them randomly. This random switching enables precise localization of each molecule and allows for the reconstruction of a high-resolution image.

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    How do super-resolution techniques overcome the Diffraction Limit?

    Super-resolution techniques, such as STED and STORM, overcome the diffraction limit by employing sophisticated methods to enhance image resolution beyond the capabilities of conventional light microscopes. They achieve this by manipulating the light-matter interactions and extracting more detailed information from the sample.

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    Sparse Activation in STORM

    In STORM, sparsely activated fluorescent molecules are crucial for achieving high-resolution imaging. The molecules must be sufficiently separated, beyond the diffraction limit, so that their individual positions can be determined accurately.

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    What happens to a fluorescent molecule in STORM after activation?

    After activation in STORM, a photoswitchable molecule emits a sufficient number of photons to allow for precise localization before entering a dark state or becoming deactivated by photobleaching. This process ensures that the position of each molecule can be accurately determined within the image.

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    Study Notes

    Mechanical Signals

    • Microscopic mechanical signals: Forces applied by cells, stiffness of cells
    • Macroscopic mechanical signals: Blood pressure, lung expansion/contraction, forces during walking, stiffness of bones, etc.

    Traction Force Microscopy

    • A technique using fluorescent marker beads to measure cell traction forces.
    • A thin PAA gel is loaded with fluorescent beads.
    • Proteins are used to facilitate cell adherence to the gel.
    • Forces exerted by a cell cause displacement of the gel, which is quantified by imaging bead displacement.

    Micropillars

    • Used to measure cell traction.
    • A method that involves using micropillars to apply controlled forces to cells.
    • Includes a glass weight to provide forces in a controlled manner.
    • A 60 µm spacer is strategically positioned between the two glass components to ensure an appropriate distance that allows for accurate measurements while maintaining structural stability during experiments involving cell traction assessment.

    FRET

    • FRET (Förster Resonance Energy Transfer) is used to monitor Src kinase activity during mechanical stimuli.
    • Measurement involves the presence of Src kinase or phosphatase and monitoring the FRET change.
    • This variation in fluorescence intensity, which is meticulously measured over time, serves as an essential indicator not only of the presence but also of the magnitude of a mechanical stimulus impacting the cellular environment. The fluctuations in fluorescence can reveal how cells respond to mechanical forces, which plays a significant role in understanding cellular behaviors such as movement, adhesion, and proliferation under different physical conditions. Consequently, these measurements facilitate valuable insights into the dynamic interactions and biochemical pathways that influence how cells communicate and adapt to their surrounding microenvironment.

    Integrative Tension Sensor (ITS)

    • A biophysical tool that measures cell adhesive forces at a single-molecule level.

    • Utilizes 18 base pair dsDNA labeled with specific components.

      • An integrin ligand that enhances adhesion to specific receptors, promoting interactions with target cells.

      • A biotin tag, which facilitates surface immobilization for effective binding and detection.

      • A quencher that plays a crucial role in fluorescence measurements by suppressing the signal when in proximity to the fluorescent probe, enabling precise monitoring of molecular interactions.

      • An integrin ligand

      • A biotin tag, for surface immobilization.

      • A quencher (blackhole quencher 2)

      • And a fluorophore (Cy3 or Cy5)

    • The dsDNA is in an inactivated state without fluorescence when the quencher is present.

    • When the dsDNA is mechanically disassociated by the transmitted force, it becomes fluorescent.

    • The tension tolerance (Ttol) can be modified by adjusting the anchoring site.

    Microindentation using AFM

    • A technique using a laser beam to detect cantilever deflections.
    • Cantilever deflections are measured to determine force-displacement curves of a sample.
    • The method tracks and quantifies how much the surface is moving when an external force is applied.

    Profile Microindentation

    • A technique used to quantify mechanical properties of cells.
    • A micropipette and cytodex bead system are involved in the method.
    • The method is used to determine the force applied to cells and is used for cell mechanics testing.

    Optical Trap/Tweezer/Levitation

    • Uses lasers to trap, manipulate, and levitate microscopic objects
    • Light momentum is used to trap, move, or levitate particles
    • Involves the transfer of momentum of light to the particle in question

    Bioimaging and Image Analysis

    • Includes image processing: Loading and displaying images, Converting between image types [binary, grayscale, RGB, multi-channel], Counting objects;
    • Includes pseudo-colour.

    Course Outline for Mechanobiology

    • Covers topics including molecular mechanisms of mechanosensation.
    • Includes organ system mechanics, disease mechanics, technological innovations in mechanobiology.
    • Examines the relationship between mechanics and biological systems.

    Grayscale to Binary

    • Converting grayscale images into binary images for analysis
    • Counting objects in grayscale images
    • Method involves converting grayscale images to a binary image by choosing a threshold on grayscale values. Images of objects become ones, and the background become zeroes.
    • Counting objects in the binary image thus corresponds to the number of original objects.

    Smoothing (Mean Filter)

    • A technique for smoothing noisy data by averaging multiple data points.
    • Used to eliminate the effects of noise in 1d signals.
    • A 3-point mean filter and 11-point mean filter are examples.

    Image Filters (Mean)

    • Used to reduce noise in images through averaging pixel neighborhood values.
    • Includes 'imfilter' MATLAB function for applying mean, gaussian, median masks.

    Image Filters (Median, Laplace)

    • Median filter technique removes noise from images by replacing a pixel with the median of its immediate surrounding pixels.
    • Laplace filter is used to perform sharpening by calculating second-order derivatives.

    Confocal Imaging

    • Combines optical sectioning and 3D reconstruction to generate 3d images.
    • Uses a pinhole to block out-of-focus light for improved resolution in images.

    When to Use Confocal

    • Confocal microscopy is best suited for:
      • Fixed, thin samples & high magnification details
      • Samples thicker than 10 µm
    • Wide-field microscopy is better for:
      • Thin samples & low magnification.
      • Live, thin, and or low magnification samples for microscopy

    Resolution

    • The Rayleigh criterion is one way to measure resolution
    • Explains the minimum resolvable distance between two point sources of light.
    • Resolution limits are due to diffraction, and the Airy disk is a diffraction limited result

    Super-Resolution Microscopy

    • Techniques like PALM, STED, and STORM enable resolution beyond the diffraction limit.
    • PALM: Uses photoactivatable fluorophores to precisely determine their spatial position
    • STED: Stimulated Emission Depletion is used to enhance resolution
    • STORM: Stochastis Optical Reconstruction Microscopy precisely locates individual molecules

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    Description

    Explore the fascinating world of mechanical signals at both microscopic and macroscopic levels in this quiz. Delve into techniques like Traction Force Microscopy and the use of micropillars for measuring cell traction. Additionally, discover how FRET is utilized to monitor Src kinase activity during mechanical stimuli.

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