Introduction to Electrophoresis

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Questions and Answers

What is the primary purpose of electrophoresis?

  • To enhance the solubility of macromolecules
  • To transport particles through a solvent using an electric field (correct)
  • To apply high temperatures to separate compounds
  • To mix different solvents for analysis

Which of the following best describes the term 'phoresis' in electrophoresis?

  • Charge
  • Identification
  • Movement
  • Separation (correct)

What factor affects the movement of ions during electrophoresis?

  • Electric field strength only
  • Temperature and atmospheric pressure
  • Weight, molecular shape, and size (correct)
  • Concentration of the solvent

What is the primary force opposing the electrophoretic migration of ions in solution?

<p>Frictional force (B)</p> Signup and view all the answers

In electrophoresis, which type of macromolecule is primarily analyzed?

<p>Proteins (C)</p> Signup and view all the answers

In which type of electrophoresis are charged molecules separated without a supporting medium?

<p>Moving boundary electrophoresis (B)</p> Signup and view all the answers

How does the charge of macromolecules affect their movement in electrophoresis?

<p>They travel towards the electrode with opposite charge (A)</p> Signup and view all the answers

What is one of the advantages of using electrophoresis for analysis?

<p>It can separate samples quantitatively (C)</p> Signup and view all the answers

Which factor does NOT impact the frictional coefficient of an ion during electrophoresis?

<p>Electric field strength (D)</p> Signup and view all the answers

What disadvantage is associated with moving boundary electrophoresis?

<p>Mixing and overlapping of sample components (C)</p> Signup and view all the answers

What does F electric represent in the electrophoresis theory?

<p>Electric force on an ion (A)</p> Signup and view all the answers

How are positively charged molecules affected by an electric field during electrophoresis?

<p>They move towards the anode (A)</p> Signup and view all the answers

Which form of electrophoresis involves the physical arrangement of samples on paper or gel?

<p>Zone electrophoresis (A)</p> Signup and view all the answers

What is the purpose of the refractometer in moving boundary electrophoresis?

<p>To measure changes in refractive index (B)</p> Signup and view all the answers

What is primarily separated during electrophoresis?

<p>Molecules and ions (C)</p> Signup and view all the answers

What fundamental principle underlies the process of electrophoresis?

<p>Electrokinetic motion (A)</p> Signup and view all the answers

What is a major limitation of paper electrophoresis?

<p>Lack of sensitivity (C)</p> Signup and view all the answers

Why is cellulose acetate preferred over paper for electrophoresis?

<p>Higher resolution at low voltage (C)</p> Signup and view all the answers

Which of the following statements about gel electrophoresis is true?

<p>It utilizes a porous gel matrix for molecule separation. (A)</p> Signup and view all the answers

What is the most common form of gel electrophoresis?

<p>Horizontal electrophoresis (D)</p> Signup and view all the answers

What happens to negatively charged molecules during electrophoresis?

<p>They attract toward the positive end. (B)</p> Signup and view all the answers

What is added to the agarose solution during the casting of horizontal gel electrophoresis?

<p>Electrophoresis buffer (A)</p> Signup and view all the answers

What type of molecules tends to lag behind in gel electrophoresis?

<p>Heavy molecules (D)</p> Signup and view all the answers

What modification happens to the hydroxyl groups in cellulose acetate to reduce its adsorption capacity?

<p>They are converted to acetate groups. (D)</p> Signup and view all the answers

What is a primary advantage of using supporting media in zone electrophoresis?

<p>It minimizes mixing of the sample. (A)</p> Signup and view all the answers

Which of the following is NOT a method of electrophoresis mentioned?

<p>Thin layer electrophoresis (D)</p> Signup and view all the answers

What type of molecules is paper electrophoresis primarily useful for separating?

<p>Small charged molecules (B)</p> Signup and view all the answers

What happens to the spots during paper electrophoresis?

<p>They migrate according to their charges. (A)</p> Signup and view all the answers

Which characteristic of paper electrophoresis makes it easier compared to gel electrophoresis?

<p>It does not involve matrix preparation. (D)</p> Signup and view all the answers

In what type of applications is paper electrophoresis utilized?

<p>Study of sickle cell disease and hemoglobin abnormalities. (B)</p> Signup and view all the answers

What electrophoresis method is best exemplified by gel electrophoresis?

<p>Zone electrophoresis (B)</p> Signup and view all the answers

Why is the application of high voltage crucial in paper electrophoresis?

<p>It minimizes diffusion and enhances resolution. (A)</p> Signup and view all the answers

What is the purpose of adding Bromophenol blue in gel electrophoresis?

<p>To act as a visual tracking dye (A)</p> Signup and view all the answers

Which component is essential for the solidification of the resolving gel in SDS-PAGE?

<p>Polyacrylamide (B)</p> Signup and view all the answers

During capillary electrophoresis, what mechanism is primarily used to inject the sample through the capillary tube?

<p>Electrokinetic energy (C)</p> Signup and view all the answers

What is the purpose of placing a ladder in electrophoresis?

<p>To determine the migration distance (C)</p> Signup and view all the answers

What happens to the gel after the completion of SDS-PAGE electrophoresis?

<p>It is rinsed with deionized water (A)</p> Signup and view all the answers

What is the main reason for using an electrolytic solution in capillary electrophoresis?

<p>To create an electric field for migration (A)</p> Signup and view all the answers

In the process of agarose gel electrophoresis, what is the function of the gel loading buffer?

<p>To allow samples to be visualized during loading (D)</p> Signup and view all the answers

What type of bands does the Coomassie blue stain reveal in SDS-PAGE?

<p>Invisible protein bands (B)</p> Signup and view all the answers

Flashcards

Electrophoresis

The movement of charged particles through a solution under the influence of an electric field.

Electrostatic force

Charged molecules move towards the electrode with the opposite charge.

Electrophoretic mobility

The rate at which a charged particle moves in an electric field.

Moving Boundary Electrophoresis

A technique that separates molecules based on their size, shape, and charge using electrophoresis.

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Zone Electrophoresis

A technique that separates molecules based on their charge on a solid support medium like paper, cellulose acetate, or gel.

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Gel Electrophoresis

A widely used technique for separating biological molecules like proteins and nucleic acids based on size and charge.

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Applications of Electrophoresis

Using electrophoresis to identify and analyze biological molecules, like proteins and DNA.

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Frictional Coefficient

The frictional coefficient is based on factors like size and shape, influencing the movement of charged particles in electrophoresis.

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Paper Electrophoresis (PE)

A technique where a strip of filter paper is used as a supporting medium in zone electrophoresis to separate small charged molecules like amino acids and proteins.

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Gel Electrophoresis (Definition)

A technique used to analyze and purify molecules by separating them based on their charge and size using a gel as the supporting medium.

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Supporting Media in Zone Electrophoresis

The advantage of using a supporting medium in zone electrophoresis is that it prevents mixing of the sample and immobilizes the molecules for easier analysis.

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Paper Electrophoresis Applications

Paper electrophoresis is a simple, cost-effective method used in various research and clinical applications.

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Clinical Applications of Paper Electrophoresis

Paper electrophoresis is useful for diagnosing medical conditions like sickle cell disease and analyzing blood clotting factors.

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Environmental Applications of Paper Electrophoresis

Paper electrophoresis is a versatile tool for environmental studies, such as testing water quality and analyzing toxic substances.

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Frictional Force in Electrophoresis

The force that opposes the movement of ions during electrophoresis. It depends on the ion's size, shape, and the solution's viscosity.

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What is electrophoresis?

A technique that separates molecules, ions, or particles based on their charges and sizes by applying an electric field. These can be proteins, DNA, or other biomolecules, and it depends on the type of electrophoresis used.

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Direction of Migration in Electrophoresis

The positively charged molecules migrate towards the anode (the positive electrode), while the negatively charged molecules move towards the cathode (the negative electrode) during electrophoresis.

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Electrophoresis Principle

The movement of charged particles (ions) through a solution under the influence of an electric field.

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Disadvantages of Moving Boundary Electrophoresis

A type of electrophoresis where the resolution of the technique is reduced due to mixing of sample components, making it less suitable for complex biological samples.

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Paper Electrophoresis

A technique used in forensics and drug testing to separate charged molecules based on their migration in an electric field. Paper is used as the supporting medium.

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Adsorption in Paper Electrophoresis

A common problem in paper electrophoresis where molecules stick to the paper, reducing their movement and creating blurry bands.

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Cellulose Acetate Electrophoresis

A type of electrophoresis where the molecules are separated on a thin sheet of cellulose acetate. It overcomes the adsorption issue of paper, resulting in sharper bands.

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Horizontal Gel Electrophoresis

A type of gel electrophoresis where the gel is horizontally oriented. Agarose is commonly used as the gel material.

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Vertical Gel Electrophoresis (SDS-PAGE)

A type of gel electrophoresis where the gel is vertically oriented. Sodium dodecyl sulfate (SDS) is commonly used to coat proteins, giving them uniform charge.

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Pouring a Horizontal Agarose Gel

The process of preparing the gel for horizontal gel electrophoresis. Agarose is dissolved in water, cooled, and poured into a casting tray.

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Electrophoresis Buffer

The liquid solution used to cover the gel during horizontal gel electrophoresis. It allows for electric current flow and maintains the stability of the gel.

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Agarose Gel Electrophoresis

A technique used to separate DNA fragments based on their size. DNA is loaded into wells in an agarose gel, and an electric current is applied. Smaller DNA fragments move faster through the gel, creating distinct bands that can be visualized under UV light.

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SDS-PAGE

A type of gel electrophoresis used to separate proteins based on size. Samples are treated with SDS (sodium dodecyl sulfate) to denature and give them a negative charge. The proteins then migrate through a polyacrylamide gel, with smaller proteins moving faster.

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Capillary Electrophoresis (CE)

A technique used to seperate molecules based on their size and charge, using a narrow capillary tube filled with an electrolytic solution. An electric field is applied, causing molecules to migrate through the tube at different speeds. The separated molecules are detected at the outlet end.

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Gel Loading Buffer

A solution used in agarose gel electrophoresis to track the progress of DNA migration. It contains a dye, often bromophenol blue, which migrates through the gel at a known speed.

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Agarose Gel Electrophoresis

A type of gel electrophoresis used for the separation of nucleic acids, mainly DNA, based on size. It involves loading the DNA sample into wells in an agarose gel and applying an electric current.

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Coomassie Blue Stain

A solution of Coomassie blue used in SDS-PAGE to stain protein bands after electrophoresis. After running the gel, the proteins are invisible, but the stain binds to them and makes them visible.

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Tracking Dye

A negatively charged dye, often bromophenol blue, added to samples before electrophoresis. It helps track the progress of the samples through the gel and allows for accurate timing of the experiment.

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Gel Tank

A device containing a gel chamber that holds the agarose or polyacrylamide gel for electrophoresis. Used to separate molecules based on their size and charge.

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Study Notes

Introduction to Electrophoresis

  • Electrophoresis is the movement of charged particles through a solvent under the influence of an electric field.
  • Most polymers containing macromolecules are electrically charged and thus move in an electric field.
  • Electrophoresis is useful for identifying and determining the structure of large molecules.

Definition of Electrophoresis

  • "Electro" refers to electricity.
  • "Phoresis" refers to separation.
  • Electrophoresis separates compounds capable of acquiring an electric charge in conducting electrodes.
  • Electrophoresis is the migration of a charged particle through a solution in an external electric field.
  • Ions suspended between electrodes migrate towards oppositely charged electrodes.

Theory of Electrophoresis

  • Ion mobility depends on the frictional coefficient.
  • The frictional coefficient depends on factors like molecular weight, shape, and size of the molecules.
  • The law of electrostatics states that the electric force (F) on an ion is equal to the charge (q) of the ion multiplied by the electric field strength (E).
  • Felectric = qE
  • The electrophoretic migration through the solution is opposed by a frictional force.
  • Ffriction = Vf Where V is the velocity and f is the frictional coefficient.
  • The frictional coefficient measures the drag exerted by the solution and depends on the ion's size, shape, state, and solution viscosity.

Working Principle of Electrophoresis

  • Electrophoresis separates molecules, ions, or colloidal particles suspended within a matrix under the influence of an electric field.
  • Positively charged molecules migrate towards the anode, while negatively charged molecules migrate towards the cathode.
  • Electrophoresis is an electrokinetic phenomenon where molecule movement is driven by an electric field.

Types of Electrophoresis

  • Moving Boundary Electrophoresis:

    • Separates components in a solution without a supporting medium.
    • Electrophoresis is carried out in a U-shaped tube with platinum electrodes.
    • Samples are dissolved in buffer and migrate to their respective opposing charge electrodes.
    • Analyte migration is monitored by refractive index change detected by a refractometer placed at the ends of the U-tube.
    • The resolution is relatively low due to mixing of sample components.
  • Zone Electrophoresis:

    • Involves use of an inert polymeric support medium between electrodes.
    • Supporting media include paper, starch, agar, or polyacrylamide ("gel").
    • The media immobilizes molecules post-electrophoresis, aiding analysis and purification.
    • Significantly improves separation resolution compared to moving boundary electrophoresis.

Methods of Zone Electrophoresis

  • Paper Electrophoresis:

    • Uses a strip of filter paper saturated with buffer.
    • Samples are spotted on the paper and subjected to a high voltage field, causing separation based on charge.
    • Separated components are visualized using staining.
  • Cellulose Acetate Electrophoresis:

    • Employs cellulose acetate membrane which has lower adsorption capacity compared to paper.
    • Improved resolution at lower voltage compared to paper electrophoresis.
  • Gel Electrophoresis:

    • Uses gel matrices as a support medium.
    • The gel's porous structure separates components based on size and charge.
    • Popular methods include agarose gel electrophoresis (for DNA/RNA) and SDS-PAGE (for proteins).

Factors Affecting Electrophoresis

  • Electric Field Strength:

    • Higher voltage usually corresponds with faster separation.
  • Sample Characteristics:

    • Charge, size, shape, and binding strength of molecules influence migration rate.
  • Buffer:

    • Ionic strength and pH characteristics impact molecular charges and migration.
  • Supporting Medium:

    • Porosity, structure, and composition of medium affect the separation process.

Applications

  • Electrophoresis is a valuable tool in various fields, including clinical diagnostics, forensics, molecular biology, and food analysis, to separate proteins, DNA, RNA, and various other molecules.

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