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Questions and Answers
Which type of nuclease specifically attacks DNA at any internal phosphodiester bond?
Which type of nuclease specifically attacks DNA at any internal phosphodiester bond?
What is the primary function of DNA polymerases in genetic engineering?
What is the primary function of DNA polymerases in genetic engineering?
Which of the following statements accurately describes the role of a nick in DNA replication?
Which of the following statements accurately describes the role of a nick in DNA replication?
Why are four different types of DNA polymerase used in genetic engineering?
Why are four different types of DNA polymerase used in genetic engineering?
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What is the main difference between DNA polymerase I and DNA polymerase III in E. coli?
What is the main difference between DNA polymerase I and DNA polymerase III in E. coli?
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Which of the following is NOT a common application of DNA polymerases in genetic engineering?
Which of the following is NOT a common application of DNA polymerases in genetic engineering?
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What is the sequence of the complementary strand of DNA to the sequence 5’ ATTGCA 3’?
What is the sequence of the complementary strand of DNA to the sequence 5’ ATTGCA 3’?
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What is the purpose of DNA polymerase in genetic engineering?
What is the purpose of DNA polymerase in genetic engineering?
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What is the 5' to 3' directionality of DNA replication?
What is the 5' to 3' directionality of DNA replication?
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How many different types of DNA polymerase are used routinely in genetic engineering?
How many different types of DNA polymerase are used routinely in genetic engineering?
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What is the difference between DNA and RNA?
What is the difference between DNA and RNA?
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What process is described as removing a phosphate group?
What process is described as removing a phosphate group?
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What is the chemical formula for a phosphate group?
What is the chemical formula for a phosphate group?
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What type of bond is typically involved in attaching a phosphate group to a molecule?
What type of bond is typically involved in attaching a phosphate group to a molecule?
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Which of the following is NOT a typical function of dephosphorylation?
Which of the following is NOT a typical function of dephosphorylation?
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Which molecule is likely involved in the process of dephosphorylation?
Which molecule is likely involved in the process of dephosphorylation?
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What is the main reason for removing phosphate groups from DNA molecules in the preparation process?
What is the main reason for removing phosphate groups from DNA molecules in the preparation process?
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What is the purpose of radiolabeling DNA molecules after phosphate removal?
What is the purpose of radiolabeling DNA molecules after phosphate removal?
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Which of the following is a direct consequence of removing phosphate groups from DNA?
Which of the following is a direct consequence of removing phosphate groups from DNA?
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What is the significance of maintaining linearity in DNA molecules before the subsequent step?
What is the significance of maintaining linearity in DNA molecules before the subsequent step?
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What is the primary type of chemical bond targeted for removal when preparing DNA molecules for specific processes?
What is the primary type of chemical bond targeted for removal when preparing DNA molecules for specific processes?
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What is the primary function of the enzyme discussed in the content?
What is the primary function of the enzyme discussed in the content?
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What happens to the enzyme when the first 323 amino acids are removed?
What happens to the enzyme when the first 323 amino acids are removed?
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Which of the following statements is TRUE about the nuclease activity discussed in the content?
Which of the following statements is TRUE about the nuclease activity discussed in the content?
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What is the most likely outcome of removing the first 323 amino acids from the enzyme, in terms of its function?
What is the most likely outcome of removing the first 323 amino acids from the enzyme, in terms of its function?
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Based on the content, what is the primary difference between the modified enzyme and the original enzyme?
Based on the content, what is the primary difference between the modified enzyme and the original enzyme?
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Flashcards
Nuclease activity
Nuclease activity
The ability of an enzyme to degrade nucleic acids like DNA.
Polypeptide
Polypeptide
A chain of amino acids forming a protein or part of a protein.
Amino acids
Amino acids
The basic building blocks of proteins, consisting of a central carbon atom and functional groups.
Polymerase function
Polymerase function
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Modified enzyme
Modified enzyme
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DNA Polymerase
DNA Polymerase
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Types of DNA Polymerase
Types of DNA Polymerase
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Genetic Engineering
Genetic Engineering
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Nucleotides
Nucleotides
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3 and 5
Ends
3 and 5
Ends
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Four types of DNA Polymerase
Four types of DNA Polymerase
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Replication
Replication
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Cleavage
Cleavage
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Endonuclease
Endonuclease
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Exonuclease
Exonuclease
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Exonuclease III
Exonuclease III
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DNase I
DNase I
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Restriction endonucleases
Restriction endonucleases
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S1 nuclease
S1 nuclease
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DNA ligase
DNA ligase
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Phosphate removal
Phosphate removal
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Ligation
Ligation
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Radiolabeling
Radiolabeling
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DNA linearity
DNA linearity
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Experiment steps
Experiment steps
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Dephosphorylation
Dephosphorylation
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Phosphate Group
Phosphate Group
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Importance of Dephosphorylation
Importance of Dephosphorylation
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Enzyme Role in Dephosphorylation
Enzyme Role in Dephosphorylation
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Consequences of Dephosphorylation
Consequences of Dephosphorylation
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Study Notes
Molecular Genetics 2022
- This is a course on Molecular Genetics offered at MISR University for Science & Technology.
Vision of the Biotechnology Department
- The department aims to be an academically accredited and pioneering body in the field of biotechnology, both regionally and internationally.
Mission of the Biotechnology Department
- The department is committed to producing qualified biotechnology engineers according to established academic standards.
- It intends to meet the needs of the local and regional labor market in the medical, pharmaceutical, agricultural, and environmental sectors.
- It is also focused on conducting innovative scientific research, providing community service, and offering scientific consultations within an upwardly mobile mindset.
DNA Manipulative Enzymes
- Intended Learning Outcomes (ILOs):
- Describe the activity and main applications of different enzymes used in recombinant DNA research.
- Differentiate between different types of DNA manipulative enzymes.
DNA Manipulation
- The key activities of DNA manipulation include cutting and joining DNA, shortening or lengthening DNA, altering it by adding or removing chemical groups, and copying it into RNA or DNA.
DNA Manipulative Enzymes
- DNA manipulative enzymes are grouped into four broad classes based on their catalyzed reactions:
- Nucleases: cut, shorten, or degrade nucleic acid molecules.
- Ligases: join nucleic acid molecules together.
- Polymerases: make copies of molecules.
- Modifying enzymes: remove or add chemical groups.
Nucleases
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Nucleases break phosphodiester bonds linking nucleotides in a DNA strand.
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Two main types of nucleases are:
- Exonucleases: remove nucleotides one by one from the end of a DNA molecule.
- Endonucleases: break internal phosphodiester bonds within a DNA molecule.
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Differences in exonucleases: the distinguishing factor is the number of strands degraded in a double-stranded molecule.
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Example exonuclease: Bal31 removes nucleotides from both strands of a double-stranded molecule.
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Other example exonuclease: Exonuclease III degrades one strand of a double-stranded molecule, leaving the other strand intact.
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Example endonucleases:
- S1 nuclease only cleaves single strands.
- DNase 1 is non-specific, attacking DNA at any internal phosphodiester bond, resulting in a mixture of mononucleotides and short oligonucleotides after prolonged action.
- Restriction endonucleases cleave double-stranded DNA at specific recognition sites.
Ligases
- DNA ligase's cellular role is the repair of single-stranded breaks in double-stranded DNA molecules, like during replication.
- They also link individual fragments of double-stranded DNA together.
Polymerases
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DNA polymerases synthesize new DNA strands complementary to an existing DNA or RNA template.
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Four types of DNA polymerases are used in genetic engineering.
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DNA polymerase I: a dual activity enzyme conducting DNA polymerization and degradation processes.
- The Klenow fragment is a modification of DNA polymerase I, retaining polymerase function but lacking nuclease activity. Used for DNA synthesis on single-stranded templates.
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Taq DNA polymerase: Used in the polymerase chain reaction (PCR). It's an enzyme from the bacterium Thermus aquaticus.
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Reverse transcriptase: produces cDNA (complementary DNA) from RNA templates.
DNA Modifying Enzymes
- These enzymes are:
- Alkaline phosphatase: a hydrolase that removes phosphate groups from molecules. Used to prevent DNA ligation and in radiolabeling of DNA
- Various types of alkaline phosphatases are common in research:
- Bacterial alkaline phosphatase (BAP)
- Shrimp alkaline phosphatase (SAP)
- Calf intestine alkaline phosphatase (CIAP)
- Placental alkaline phosphatase (PLAP)
- Polynucleotide kinase: adds phosphate groups onto free 5’ termini, the reverse function of alkaline phosphatase
- Terminal deoxynucleotidyl transferase: catalyzes adding one or more deoxyribonucleotides to the 3' terminus of a DNA molecule, independent of a template. This enzyme has use in rapid amplification of cDNA ends (RACE), and adding radioactively labeled nucleotides.
Topoisomerases
- Topoisomerases change the conformation of circular DNA, such as plasmids, by introducing or removing supercoils. This involves wrapping around DNA, making a cut, permitting the helix to spin, and reconnecting the broken strands.
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Description
Test your knowledge on the crucial role of DNA polymerases in genetic engineering and DNA replication. This quiz covers various aspects of DNA structure, function, and the specific types of polymerases involved in the process. Challenge yourself with questions about their applications and differences!