Podcast
Questions and Answers
What is the primary concept introduced by the 'one gene, one enzyme' hypothesis?
What is the primary concept introduced by the 'one gene, one enzyme' hypothesis?
- Genes are responsible for encoding proteins, with each gene encoding a separate enzyme. (correct)
- Each gene functions by encoding multiple enzymes with overlapping functions.
- Genes and enzymes are independently inherited and do not directly influence each other's function.
- Enzymes can be encoded by multiple genes, allowing for redundancy in metabolic pathways.
In the context of the 'one gene, one polypeptide' hypothesis, which statement best describes the relationship between a gene and a polypeptide?
In the context of the 'one gene, one polypeptide' hypothesis, which statement best describes the relationship between a gene and a polypeptide?
- Multiple genes are required to synthesize a single polypeptide.
- A single gene can encode multiple polypeptides through alternative splicing.
- Each gene directs the synthesis of one specific polypeptide chain. (correct)
- Polypeptides are synthesized independently of genes through non-coding DNA regions.
What is the primary utility of using Neurospora in Beadle and Tatum's experiments?
What is the primary utility of using Neurospora in Beadle and Tatum's experiments?
- _Neurospora_'s rapid reproduction rate enabled quick observation of evolutionary changes.
- _Neurospora_'s simple metabolic pathways allowed easy identification of which proteins were being produced
- _Neurospora_'s resistance to radiation made it ideal for studying DNA repair mechanisms.
- _Neurospora_'s complex life cycle facilitated the genetic analysis of nutritional mutations. (correct)
What is the key characteristic of auxotrophic mutants that makes them useful in genetic studies?
What is the key characteristic of auxotrophic mutants that makes them useful in genetic studies?
In a biochemical pathway, if a mutant strain can grow when supplemented with compound C but not with compound A or B, what can be inferred about the role of compound C?
In a biochemical pathway, if a mutant strain can grow when supplemented with compound C but not with compound A or B, what can be inferred about the role of compound C?
What is the significance of the primary structure of a protein in determining its overall structure?
What is the significance of the primary structure of a protein in determining its overall structure?
Which of the following is an accurate description of synonymous codons?
Which of the following is an accurate description of synonymous codons?
What defines isoaccepting tRNAs?
What defines isoaccepting tRNAs?
What is the role of the wobble hypothesis in genetic translation?
What is the role of the wobble hypothesis in genetic translation?
Which of the following codons typically serves as the initiation codon for protein synthesis?
Which of the following codons typically serves as the initiation codon for protein synthesis?
Which event signals the termination of translation?
Which event signals the termination of translation?
What is the role of aminoacyl-tRNA synthetases in protein synthesis?
What is the role of aminoacyl-tRNA synthetases in protein synthesis?
To which end of the tRNA molecule do amino acids attach?
To which end of the tRNA molecule do amino acids attach?
What is the function of the Shine-Dalgarno sequence in bacterial mRNA?
What is the function of the Shine-Dalgarno sequence in bacterial mRNA?
How does the Kozak sequence in eukaryotic mRNA influence translation?
How does the Kozak sequence in eukaryotic mRNA influence translation?
During elongation, what is the role of the EF-Tu (elongation factor Tu) protein?
During elongation, what is the role of the EF-Tu (elongation factor Tu) protein?
During translation elongation, which site on the ribosome does a tRNA molecule first bind to (excluding the initiator tRNA)?
During translation elongation, which site on the ribosome does a tRNA molecule first bind to (excluding the initiator tRNA)?
Elongation factor G (EF-G) facilitates which step in translation?
Elongation factor G (EF-G) facilitates which step in translation?
During translation termination, what directly recognizes the stop codon?
During translation termination, what directly recognizes the stop codon?
What is a polyribosome (or polysome)?
What is a polyribosome (or polysome)?
What is a key function of tmRNA in bacteria?
What is a key function of tmRNA in bacteria?
What is the structural level most directly determined by the sequence of amino acids?
What is the structural level most directly determined by the sequence of amino acids?
Which of the following is NOT a stop codon?
Which of the following is NOT a stop codon?
If a mutation occurs that alters the anticodon sequence of a tRNA, what is the most likely consequence?
If a mutation occurs that alters the anticodon sequence of a tRNA, what is the most likely consequence?
What part of the ribosome catalyzes the formation of peptide bonds between amino acids?
What part of the ribosome catalyzes the formation of peptide bonds between amino acids?
What would likely happen if a cell's aminoacyl-tRNA synthetase for alanine (Ala) started attaching glycine (Gly) to the tRNAs that are supposed to carry alanine?
What would likely happen if a cell's aminoacyl-tRNA synthetase for alanine (Ala) started attaching glycine (Gly) to the tRNAs that are supposed to carry alanine?
A mutation in a bacterial cell results in a non-functional initiation factor 3 (IF3). What is the most likely consequence?
A mutation in a bacterial cell results in a non-functional initiation factor 3 (IF3). What is the most likely consequence?
Consider a eukaryotic mRNA that lacks a proper termination codon due to a mutation. What is the likely fate of the ribosome translating such mRNA?
Consider a eukaryotic mRNA that lacks a proper termination codon due to a mutation. What is the likely fate of the ribosome translating such mRNA?
If the sequence of bases along an mRNA molecule is 5'-AUG-CCU-GAC-3', what sequence of tRNA anticodons would bind to it?
If the sequence of bases along an mRNA molecule is 5'-AUG-CCU-GAC-3', what sequence of tRNA anticodons would bind to it?
What would happen if a mutation caused a tRNA to lose its amino acid attachment site?
What would happen if a mutation caused a tRNA to lose its amino acid attachment site?
Which of the following components is NOT directly involved in the termination of translation?
Which of the following components is NOT directly involved in the termination of translation?
In eukaryotes, where does translation typically occur?
In eukaryotes, where does translation typically occur?
According to the wobble hypothesis, if a tRNA anticodon has the base inosine (I) at its 5' end, which mRNA codons can it recognize?
According to the wobble hypothesis, if a tRNA anticodon has the base inosine (I) at its 5' end, which mRNA codons can it recognize?
What is the role of GTP (guanosine triphosphate) in translation?
What is the role of GTP (guanosine triphosphate) in translation?
What prevents tRNAs from binding to the A site of the ribosome?
What prevents tRNAs from binding to the A site of the ribosome?
In Beadle and Tatum's experiments, how would a mutant that requires arginine for growth be classified based on its ability to grow on different supplemented media?
In Beadle and Tatum's experiments, how would a mutant that requires arginine for growth be classified based on its ability to grow on different supplemented media?
How does the concept of 'one gene, one polypeptide' differ from the earlier 'one gene, one enzyme' hypothesis?
How does the concept of 'one gene, one polypeptide' differ from the earlier 'one gene, one enzyme' hypothesis?
In studying a metabolic pathway, you identify a mutant strain that can grow when supplemented with compound D, but not with compounds A, B, or C. Assuming D is the final product, what does this suggest about the metabolic block?
In studying a metabolic pathway, you identify a mutant strain that can grow when supplemented with compound D, but not with compounds A, B, or C. Assuming D is the final product, what does this suggest about the metabolic block?
If a protein consists of multiple subunits, each encoded by a different gene, which level of protein structure describes the arrangement of these subunits?
If a protein consists of multiple subunits, each encoded by a different gene, which level of protein structure describes the arrangement of these subunits?
Considering the structure of amino acids, what chemical linkage is responsible for creating the primary structure of a protein?
Considering the structure of amino acids, what chemical linkage is responsible for creating the primary structure of a protein?
Which of the following is the most direct consequence of the degeneracy of the genetic code?
Which of the following is the most direct consequence of the degeneracy of the genetic code?
How do synonymous codons contribute to the efficiency and robustness of translation?
How do synonymous codons contribute to the efficiency and robustness of translation?
What is the functional significance of isoaccepting tRNAs in the process of translation?
What is the functional significance of isoaccepting tRNAs in the process of translation?
According to the wobble hypothesis, what is the minimum number of tRNAs theoretically required to recognize all codons for a specific amino acid that is specified by six different codons?
According to the wobble hypothesis, what is the minimum number of tRNAs theoretically required to recognize all codons for a specific amino acid that is specified by six different codons?
How does the initiation codon, AUG, contribute to maintaining the correct reading frame during translation?
How does the initiation codon, AUG, contribute to maintaining the correct reading frame during translation?
During translation, what would be the most immediate effect if a cell lacked release factors?
During translation, what would be the most immediate effect if a cell lacked release factors?
What could be a consequence of a mutation that impairs the function of aminoacyl-tRNA synthetases?
What could be a consequence of a mutation that impairs the function of aminoacyl-tRNA synthetases?
What determines the specificity of a tRNA molecule for a particular amino acid?
What determines the specificity of a tRNA molecule for a particular amino acid?
How does the Shine-Dalgarno sequence ensure the correct initiation of translation in bacteria?
How does the Shine-Dalgarno sequence ensure the correct initiation of translation in bacteria?
How would translation be affected in eukaryotic cells if the Kozak sequence were mutated such that it no longer effectively binds initiation factors?
How would translation be affected in eukaryotic cells if the Kozak sequence were mutated such that it no longer effectively binds initiation factors?
What is the role of EF-Tu (elongation factor Tu) in the elongation phase of translation?
What is the role of EF-Tu (elongation factor Tu) in the elongation phase of translation?
What event during translation elongation is facilitated by elongation factor G (EF-G)?
What event during translation elongation is facilitated by elongation factor G (EF-G)?
During translation termination, what directly recognizes the stop codon in the mRNA sequence?
During translation termination, what directly recognizes the stop codon in the mRNA sequence?
What is the role of a polysome (or polyribosome) in protein synthesis?
What is the role of a polysome (or polyribosome) in protein synthesis?
What unique function does tmRNA perform when a bacterial ribosome stalls due to mRNA damage or a missing stop codon?
What unique function does tmRNA perform when a bacterial ribosome stalls due to mRNA damage or a missing stop codon?
If the sequence of bases along an mRNA molecule is 5'-AUG-CCU-GAC-3', what amino acid sequence will be produced?
If the sequence of bases along an mRNA molecule is 5'-AUG-CCU-GAC-3', what amino acid sequence will be produced?
If a tRNA normally carrying alanine (Ala) is mistakenly charged with glycine (Gly) by an altered aminoacyl-tRNA synthetase, what would be the most immediate consequence during translation?
If a tRNA normally carrying alanine (Ala) is mistakenly charged with glycine (Gly) by an altered aminoacyl-tRNA synthetase, what would be the most immediate consequence during translation?
What is compromised by mutation of a bacterial cell that results in a non-functional initiation factor 3 (IF3)?
What is compromised by mutation of a bacterial cell that results in a non-functional initiation factor 3 (IF3)?
What typically happens to a eukaryotic mRNA that lacks a proper termination codon due to a mutation?
What typically happens to a eukaryotic mRNA that lacks a proper termination codon due to a mutation?
What is the likely effect if a mutation caused a tRNA to lose its amino acid attachment site?
What is the likely effect if a mutation caused a tRNA to lose its amino acid attachment site?
What is the primary role of GTP (guanosine triphosphate) in the process of translation?
What is the primary role of GTP (guanosine triphosphate) in the process of translation?
In the experiment conducted by Nirenberg and Matthaei to decipher the genetic code, what was the significance of using homopolymers (e.g., poly-U) in a cell-free translation system?
In the experiment conducted by Nirenberg and Matthaei to decipher the genetic code, what was the significance of using homopolymers (e.g., poly-U) in a cell-free translation system?
What aspect of the tRNA structure is critical for proper function during translation?
What aspect of the tRNA structure is critical for proper function during translation?
During the initiation of translation in bacterial cells, the small ribosomal subunit initially binds to which specific region of the mRNA?
During the initiation of translation in bacterial cells, the small ribosomal subunit initially binds to which specific region of the mRNA?
What is the functional significance of the poly(A) tail present in eukaryotic mRNA during the initiation of translation?
What is the functional significance of the poly(A) tail present in eukaryotic mRNA during the initiation of translation?
In a polyribosome complex, which of the following characteristics would typically be observed?
In a polyribosome complex, which of the following characteristics would typically be observed?
How does the presence of a premature stop codon in an mRNA molecule typically affect translation and mRNA stability in eukaryotes?
How does the presence of a premature stop codon in an mRNA molecule typically affect translation and mRNA stability in eukaryotes?
What role do molecular chaperones play in post-translational modification of proteins?
What role do molecular chaperones play in post-translational modification of proteins?
During translation what step is affected due to antibiotics?
During translation what step is affected due to antibiotics?
Flashcards
One gene, one enzyme
One gene, one enzyme
Genes function by encoding enzymes; each gene encodes a separate enzyme.
Auxotrophic mutation
Auxotrophic mutation
A mutation where an organism requires a particular organic compound to grow.
Proteins
Proteins
Polymers consisting of amino acids linked by peptide bonds.
Primary structure
Primary structure
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Secondary & tertiary structures
Secondary & tertiary structures
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Quaternary structure
Quaternary structure
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Codon
Codon
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Nirenberg and Matthaei experiment
Nirenberg and Matthaei experiment
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Nirenberg and Leder
Nirenberg and Leder
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Codon
Codon
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Degenerate code
Degenerate code
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Isoaccepting tRNAs
Isoaccepting tRNAs
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Wobble hypothesis
Wobble hypothesis
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Reading frame
Reading frame
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Shine-Dalgarno
Shine-Dalgarno
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Kozak sequence
Kozak sequence
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Aminoacyl-tRNA synthetases
Aminoacyl-tRNA synthetases
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Initiation factor 3
Initiation factor 3
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Site E
Site E
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Site P
Site P
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Site A
Site A
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Elongation Factor G
Elongation Factor G
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A polyribosome
A polyribosome
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Messenger RNA surveillance
Messenger RNA surveillance
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Nonsense-mediated mRNA decay
Nonsense-mediated mRNA decay
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Study Notes
- Chapter 15 focuses on the genetic code and translation.
Many Genes Encode Proteins
- Genes function by encoding enzymes.
- Each gene encodes a separate enzyme, it could be described more specifically as a one gene, one polypeptide hypothesis.
- Beadle and Tatum worked out the relation of genes to proteins using the fungus Neurospora, which has a complex life cycle.
- Beadle and Tatum developed a method for isolating auxotrophic mutants in Neurospora.
Growth of Arginine Auxotrophic Mutants
- Group I mutants can grow on minimal medium supplemented with ornithine, citrulline, or arginine, as the mutation blocks a step prior to the synthesis of all three.
- Group II mutants grow on medium supplemented with either arginine or citrulline but not ornithine, as the mutation blocks a step prior to the synthesis of citrulline and arginine.
- Group III mutants grow only on medium supplemented with arginine where the mutation blocks a step prior to the synthesis of arginine.
- Each gene encodes a separate protein, this case is an enzyme.
- B → A → C describes the order of A, B, C in a biochemical pathway.
Protein Structure and Function
- Proteins are polymers consisting of amino acids linked by peptide bonds.
- Amino acid sequence is the primary structure, which folds to create secondary and tertiary structures.
- Two or more polypeptide chains associate to form the quaternary structure.
- The primary structure primarily determines the secondary and tertiary structures of a protein.
The Genetic Code
- Breaking the genetic code.
- Degeneracy of the code.
- Includes the reading frame and initiation codons.
- Termination codons.
- Also, the universality of the code.
Breaking the Genetic Code
- Use of Homopolymers and Random copolymers to help break the code
- Also, Ribosome-bound tRNAs helped break the code
- Nirenberg and Matthaei developed a method for identifying the amino acid specified by a homopolymer.
- A codon is three nucleotides that encode an amino acid.
- Nirenberg and Leder used ribosome-bound tRNAs to provide additional information about the genetic code
RNA Genetic Code Summary
- Codon: a triplet RNA code made from 64 possible codons.
- 64 possible codons are made of 3 stop codons and 61 sense codons
Degeneracy of the Genetic RNA Code
- Degenerate code: amino acid may be specified by more than one codon.
- Synonymous codons: codons that specify the same amino acid
- Isoaccepting tRNAs: different tRNAs that accept the same amino acid but have different anticodons.
- Sense codons: encoding amino acid
- Initiation codon: AUG
- Termination codon: UAA, UAG, UGA
- Wobble hypothesis
- AUG is an initiation codon, UAA, UAG, and UGA are termination (stop) codons.
- In the pairing of a codon and anticodon, wobble may exist if the mRNA and tRNA pair in an antiparallel fashion.
- With wobble, a single anticodon can pair with more than one codon.
Reading Frame and Initiation Codon info
- Reading frame: three ways in which the sequence can be read in groups of three, each different way of reading encodes a different amino acid sequence.
- Nonoverlapping: A single nucleotide may not be included in more than one codon.
- The universality of the code: near universal, with some exceptions.
- The initiation codon in bacteria encodes N-formylmethionine; in eukaryotes, it encodes methionine.
- Termination codons do not specify amino acids.
- During the initiation of translation in bacteria, the small ribosomal subunit binds to the Shine-Delgarno sequence.
Translation of of Amino Acids
- The binding of amino acids to transfer RNAs
- The initiation of translation
- Elongation and Termination
- The translation of an mRNA molecule takes place on a ribosome.
- N represents the amino end of the protein, while C represents the carboxyl end.
Amino Acid Binding
- Aminoacyl-tRNA syntheses and tRNA charging are needed for binding
- The specificity between an amino acid and its tRNA is determined by each individual aminoacyl-tRNA synthesis.
- There are exactly 20 different aminoacyl-tRNA syntheses in a cell.
- Amino acids attach to the 3' end of tRNAs.
tRNA specifics
- Certain positions on tRNA molecules are recognized by the appropriate aminoacyl-tRNA synthetase.
- An amino acid becomes attached to the appropriate tRNA in a two-step reaction.
Initiation of Translation
- Initiation factors IF-3, initiator tRNA with N-formylmethionine attached to form fmet-tRNA, are needed for initiation
- Energy molecule: GTP
Bacterial Vs Eukaryotic Cells In Initiation
- The Shine-Dalgarno consensus sequence in bacterial cells is recognized by the small unit of the ribosome.
- The Kozak sequence in eukaryotic cells facilitates the identification of the start codon.
- The initiation of translation requires several initiation factors and GTP.
- The Shine-Dalgarno consensus sequence in mRNA is required for the attachment of the small subunit of the ribosome.
- The poly(A) tail of eukaryotic mRNA plays a role in the initiation of translation.
Elongation Steps
- Exit site E
- Peptidyl site P
- Aminoacyl site A
- Elongation factors: Tu, Ts, and G
- Elongation of translation comprises three steps.
- In elongation, the creation of peptide bonds between amino acids is catalyzed by rRNA.
Termination Stage
- Translation ends when the ribosome reaches a termination codon.
- Termination codons include UAA, UAG, and UGA.
- Release factors bind to the termination codon, causing the release of:
- The polypeptide from the last tRNA
- The tRNA from the ribosome
- The mRNA from the ribosome
- Translation consists of tRNA charging, initiation, elongation, and termination.
- Amino acids are linked in the order specified by mRNA to create a polypeptide chain.
Process of Translation
- A number of initiation, elongation, and release factors take part in the process and energy supplied by ATP and GTP.
- The components required for protein synthesis in bacterial cells differ for each stage
- The universal genetic code has some exceptions
RNA and Ribisomes Affect Protein Synthesis
- The three-dimensional structure of the ribosome.
- Polyribosome: an mRNA with several ribosomes attached
- In a polyribosome, the polypeptides associated with ribosomes will be the longest at the 3' end of mRNA.
- Additional properties of RNA and ribosomes affect protein synthesis.
- Messenger RNA surveillance -Posttranslational modifications of proteins
- Translation and antibiotics -Nonstandard protein synthesis
- The tmRNA in bacteria allows stalled ribosomes to resume translation.
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