Genetic Approaches in Disease Research
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Questions and Answers

Which of the following is NOT a type of DNA sequence variation?

  • Insertion
  • Substitution
  • Alternative splicing (correct)
  • Deletion

Which type of mutation has the greatest effect on protein function?

  • Transition
  • Nonsense (correct)
  • Transversion
  • Missense

What is the current human genome build?

  • GRCh38 (correct)
  • GRCh39
  • GRCh37
  • GRCh36

What is the main difference between single base pair level variations and structural variants?

<p>Sequence length (D)</p> Signup and view all the answers

Which factor contributes to the variation in the human genome?

<p>Mutations over animal and human evolution (B)</p> Signup and view all the answers

What is a haplotype?

<p>A genotype inherited from one of the parents (B)</p> Signup and view all the answers

What is the suggested nomenclature for mostly SNP and short indels?

<p>SNV (A)</p> Signup and view all the answers

Which continent generally has a higher number of variants in the human genome?

<p>Africa (D)</p> Signup and view all the answers

Which type of indel in exons typically results in a frameshift and premature stop codon?

<p>1-2 bp insertion (B)</p> Signup and view all the answers

What is the effect of a 3 bp inframe indel in exons?

<p>Modifies the function of the protein (C)</p> Signup and view all the answers

Where are the effects of indels within introns most likely to occur?

<p>Splice sites (B)</p> Signup and view all the answers

What is the main effect of small indels in transcription factor binding sites?

<p>Major effects (D)</p> Signup and view all the answers

Which of the following is a cause of improper base pairing or insertion/deletions in DNA?

<p>Base pair modifiers (B)</p> Signup and view all the answers

Which of the following is a result of radiation exposure?

<p>Cross-linking (C)</p> Signup and view all the answers

Why do surface epithelial cells (gut and skin) have short life-times compared to neurons?

<p>Chemical reactions result in modification at a low frequency (A)</p> Signup and view all the answers

What can result in small insertions and deletions during DNA replication?

<p>Strand slippage (D)</p> Signup and view all the answers

Which of the following is a variant that primarily impacts translation rate?

<p>Variants in the Kozak sequence (D)</p> Signup and view all the answers

Which of the following is NOT a variant that impacts polyadenylation, mRNA lifetime, and transport?

<p>Variants in the 3'-UTR (D)</p> Signup and view all the answers

Which of the following is a classification of variants based on predicted and/or observed effects?

<p>Pathogenic (D)</p> Signup and view all the answers

Which of the following is an example of a variant coding?

<p>c.34G&gt;C (p.Val12Leu) (C)</p> Signup and view all the answers

Which method is used to determine the molecular mechanisms of a disease in order to guide treatment?

<p>Real world approach (A)</p> Signup and view all the answers

What is the relationship between linked genes and Mendelian inheritance patterns?

<p>Linked genes do not follow Mendelian inheritance patterns (A)</p> Signup and view all the answers

What is the probability of crossover between two adjacent genes on a chromosome?

<p>0.5 (D)</p> Signup and view all the answers

What is the difference between genetic mapping and physical mapping?

<p>Genetic mapping is based on phenotypic features, while physical mapping is based on molecular markers (C)</p> Signup and view all the answers

Which type of marker can be phenotype or genotype based?

<p>Both phenotype and genotype based (B)</p> Signup and view all the answers

What does LOD score stand for?

<p>Log of Odds ratio score (A)</p> Signup and view all the answers

What is the simplest form of the LOD score equation?

<p>LOD = log [probability of birth sequence with observed linkage value/probability of birth sequence with no linkage] (C)</p> Signup and view all the answers

What does the null hypothesis state about theta for a dihybrid unlinked gene?

<p>Theta = 0.25 (D)</p> Signup and view all the answers

What is the range of the recombinant probability (theta) for one meiosis for one gene?

<p>0 to 0.5 (D)</p> Signup and view all the answers

What did studies of Mendelian disease genes reveal about disease-causing mutations?

<p>They cause major changes in encoded proteins (B)</p> Signup and view all the answers

Which of the following is a type of mutation that results in a complete loss of activity of a protein?

<p>Null mutation (A)</p> Signup and view all the answers

Which of the following is a type of mutation that gives a new functionality to a protein?

<p>Neomorph (C)</p> Signup and view all the answers

Which of the following is a type of mutation that affects the wild type gene product in a negative way?

<p>Dominant negative mutation (C)</p> Signup and view all the answers

Which of the following is a type of mutation that is dependent upon the environment for its phenotype?

<p>Conditional loss or gain of function mutation (B)</p> Signup and view all the answers

Which of the following is a cause of DNA replication errors resulting in single nucleotide variants (SNVs)?

<p>Tautomeric shifts (B)</p> Signup and view all the answers

Which of the following is a mechanism that can result in small insertions and deletions during DNA replication?

<p>Strand slippage (C)</p> Signup and view all the answers

Which of the following can result in chromosomal structural aberrations and complex rearrangements?

<p>FoSTeS (A)</p> Signup and view all the answers

Which of the following is a mechanism that can lead to translocations during meiosis or DNA repair?

<p>Non-allelic homologous recombination (D)</p> Signup and view all the answers

Which of the following is NOT a type of DNA sequence variation?

<p>Substitutions (B)</p> Signup and view all the answers

What is the effect of a 3 bp inframe indel in exons?

<p>It changes the amino acid sequence of the protein (A)</p> Signup and view all the answers

Which of the following is a classification of variants based on their predicted and/or observed effects?

<p>Pathogenic (B)</p> Signup and view all the answers

What is the main effect of small indels in transcription factor binding sites?

<p>They impact gene expression and regulation (D)</p> Signup and view all the answers

What is the estimated mutation rate for single nucleotide variants (SNVs) in humans?

<p>2 x 10-8/bp-generation (A)</p> Signup and view all the answers

What is the suggested nomenclature for mostly SNPs and short indels?

<p>Genomic variant call format (VCF) (C)</p> Signup and view all the answers

Which of the following is NOT a factor contributing to variation in the human genome?

<p>Maintaining neutral variations (A)</p> Signup and view all the answers

What is the effect of somatic variations in an organism?

<p>Can have phenotypic effects in progeny of mutant cells (B)</p> Signup and view all the answers

Which method is used to determine the molecular mechanisms of a disease in order to guide treatment?

<p>GWAS (D)</p> Signup and view all the answers

What is the relationship between linked genes and Mendelian inheritance patterns?

<p>Linked genes sometimes follow Mendelian inheritance patterns (A)</p> Signup and view all the answers

What is the range of the recombinant probability (theta) for one meiosis for one gene?

<p>0 to 0.5 (A)</p> Signup and view all the answers

What is the main effect of small indels in transcription factor binding sites?

<p>Reduced transcription factor binding (C)</p> Signup and view all the answers

Which of the following factors contribute to the variation in the human genome?

<p>Mutations over animal and human evolution (A)</p> Signup and view all the answers

What is the main goal of the 1000 Genomes project consortium?

<p>To analyze genomic data to develop ethnic haplotypes for use as reference genomes (D)</p> Signup and view all the answers

What is the typical variation from the reference genome in terms of the number of variants?

<p>About 3 million (about 1%) (D)</p> Signup and view all the answers

Which continent generally has a higher number of variants in the human genome?

<p>Africa (B)</p> Signup and view all the answers

Which of the following is a characteristic of genotype-based markers?

<p>They use well-characterized sequences spaced along the chromosomes (D)</p> Signup and view all the answers

What is the range of the recombinant probability (theta) for one meiosis for one gene?

<p>0 to 0.5 (B)</p> Signup and view all the answers

What is the null hypothesis regarding theta for a dihybrid unlinked gene?

<p>Theta is equal to 0.25 (B)</p> Signup and view all the answers

What is the LOD score equation used for?

<p>Estimating linkage (B)</p> Signup and view all the answers

What does LOD stand for in LOD score?

<p>Logarithm of Odds (D)</p> Signup and view all the answers

What is the observed linkage in the simplest form of the LOD score equation?

<p>Observed recombinant phenotypes (C)</p> Signup and view all the answers

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