Podcast
Questions and Answers
What role does polyadenylation play in the RNA lifecycle?
What role does polyadenylation play in the RNA lifecycle?
- It replaces exons with introns during RNA maturation.
- It protects the 3' end from exonuclease degradation. (correct)
- It enhances the binding of RNA polymerase to DNA.
- It facilitates protein synthesis by enhancing ribosome binding.
Which small nuclear RNA is not involved in the formation of spliceosomes?
Which small nuclear RNA is not involved in the formation of spliceosomes?
- U6
- U1
- U5
- U3 (correct)
What modification is performed on tRNA during its processing?
What modification is performed on tRNA during its processing?
- Addition of a poly-A tail.
- Incorporation of a 7-methylguanylate cap.
- Capping with trimethylguanosine for ribosomal recognition.
- Removal of the 5' extension and addition of CCA at the 3' end. (correct)
What is the outcome of alternative splicing in mRNA processing?
What is the outcome of alternative splicing in mRNA processing?
What is the primary function of small nuclear ribonucleoproteins (snRNPs) in RNA splicing?
What is the primary function of small nuclear ribonucleoproteins (snRNPs) in RNA splicing?
What characterizes the initiation phase of transcription in prokaryotes?
What characterizes the initiation phase of transcription in prokaryotes?
How does termination of transcription differ between prokaryotes and eukaryotes?
How does termination of transcription differ between prokaryotes and eukaryotes?
Which statement accurately describes eukaryotic transcription elongation?
Which statement accurately describes eukaryotic transcription elongation?
What is the composition of the RNA polymerase in prokaryotic transcription?
What is the composition of the RNA polymerase in prokaryotic transcription?
Which eukaryotic RNA polymerase is responsible for synthesizing mRNA?
Which eukaryotic RNA polymerase is responsible for synthesizing mRNA?
Which factors are recognized during the initiation phase of transcription in eukaryotes?
Which factors are recognized during the initiation phase of transcription in eukaryotes?
What is the function of the TATA box in eukaryotic transcription?
What is the function of the TATA box in eukaryotic transcription?
In the context of the preinitiation complex, which component directly binds to the TATA box?
In the context of the preinitiation complex, which component directly binds to the TATA box?
Which of the following is NOT a feature of RNA polymerase II?
Which of the following is NOT a feature of RNA polymerase II?
What is the primary role of transcription factors in eukaryotic transcription?
What is the primary role of transcription factors in eukaryotic transcription?
What determines the frequency of transcription in eukaryotes?
What determines the frequency of transcription in eukaryotes?
What is the significance of the CAAT box in the transcription process?
What is the significance of the CAAT box in the transcription process?
Which mechanism is associated with the absence of a hairpin in histone mRNAs?
Which mechanism is associated with the absence of a hairpin in histone mRNAs?
Which transcription factor is recruited after TFIIB during the formation of the transcription initiation complex?
Which transcription factor is recruited after TFIIB during the formation of the transcription initiation complex?
What initiates the transcription process by RNA polymerase II?
What initiates the transcription process by RNA polymerase II?
What is the role of Polyadenylation Specificity Factor (CPSF) in transcription termination?
What is the role of Polyadenylation Specificity Factor (CPSF) in transcription termination?
Which of the following statements about capping of mRNA is true?
Which of the following statements about capping of mRNA is true?
What is the main consequence of enhancer sequences binding during transcription initiation?
What is the main consequence of enhancer sequences binding during transcription initiation?
What role does Cleavage Stimulation Factor (CstF) play in transcription termination?
What role does Cleavage Stimulation Factor (CstF) play in transcription termination?
During transcription elongation, what process must occur to allow RNA synthesis to progress?
During transcription elongation, what process must occur to allow RNA synthesis to progress?
What sequence in the emerging RNA is critical for transcription termination?
What sequence in the emerging RNA is critical for transcription termination?
What is the role of the sigma factor in prokaryotic transcription initiation?
What is the role of the sigma factor in prokaryotic transcription initiation?
What is the significance of the TATA box in prokaryotic transcription?
What is the significance of the TATA box in prokaryotic transcription?
Which enzyme is responsible for relieving positive supercoiling during RNA transcription?
Which enzyme is responsible for relieving positive supercoiling during RNA transcription?
What characterizes the Rho factor in prokaryotic transcription termination?
What characterizes the Rho factor in prokaryotic transcription termination?
What is the composition of prokaryotic RNA polymerase?
What is the composition of prokaryotic RNA polymerase?
Which statement about the palindromic GC-rich region at transcription termination is true?
Which statement about the palindromic GC-rich region at transcription termination is true?
What is the function of topoisomerase during transcription in prokaryotes?
What is the function of topoisomerase during transcription in prokaryotes?
What distinguishes Rho-independent termination of transcription from Rho-dependent termination?
What distinguishes Rho-independent termination of transcription from Rho-dependent termination?
Flashcards
Prokaryotic RNA Polymerase
Prokaryotic RNA Polymerase
In prokaryotes, this enzyme is responsible for creating all three types of RNA: mRNA, rRNA, and tRNA.
Sigma Factor (σ)
Sigma Factor (σ)
A protein subunit of prokaryotic RNA polymerase that recognizes and binds to the promoter region.
TATA Box
TATA Box
A specific DNA sequence located around 10 bases upstream of the start point of transcription in prokaryotes.
TTGACA Box
TTGACA Box
Signup and view all the flashcards
Elongation in Transcription
Elongation in Transcription
Signup and view all the flashcards
Rho Factor
Rho Factor
Signup and view all the flashcards
Rho-Independent Termination
Rho-Independent Termination
Signup and view all the flashcards
Palindromic GC-Rich Region
Palindromic GC-Rich Region
Signup and view all the flashcards
Histone mRNA Hairpin Element
Histone mRNA Hairpin Element
Signup and view all the flashcards
Promoter
Promoter
Signup and view all the flashcards
Preinitiation Complex (PIC)
Preinitiation Complex (PIC)
Signup and view all the flashcards
GC Box
GC Box
Signup and view all the flashcards
TATA box-binding protein (TBP)
TATA box-binding protein (TBP)
Signup and view all the flashcards
Transcription Factor IID (TFIID)
Transcription Factor IID (TFIID)
Signup and view all the flashcards
Transcription
Transcription
Signup and view all the flashcards
Basal Transcription Apparatus
Basal Transcription Apparatus
Signup and view all the flashcards
Enhancer Sequences
Enhancer Sequences
Signup and view all the flashcards
DNA Unwinding
DNA Unwinding
Signup and view all the flashcards
Capping
Capping
Signup and view all the flashcards
Polyadenylation
Polyadenylation
Signup and view all the flashcards
Splicing
Splicing
Signup and view all the flashcards
Elongation
Elongation
Signup and view all the flashcards
Termination
Termination
Signup and view all the flashcards
Sigma Factor
Sigma Factor
Signup and view all the flashcards
TATA Box (Pribnow Box) & TTGACA Box
TATA Box (Pribnow Box) & TTGACA Box
Signup and view all the flashcards
TATA & CAAT & GC Boxes
TATA & CAAT & GC Boxes
Signup and view all the flashcards
Gyrase Enzyme
Gyrase Enzyme
Signup and view all the flashcards
RNA Splicing
RNA Splicing
Signup and view all the flashcards
snRNAs (small nuclear RNAs)
snRNAs (small nuclear RNAs)
Signup and view all the flashcards
Alternative Splicing
Alternative Splicing
Signup and view all the flashcards
tRNA (transfer RNA)
tRNA (transfer RNA)
Signup and view all the flashcards
Study Notes
Gene Expression (Transcription) in Prokaryotes
- Prokaryotes use only one RNA polymerase for synthesizing three types of RNA.
- This polymerase is composed of a sigma factor and two alpha and two beta subunits.
- The sigma factor recognizes and binds to the promoter region (TATA box).
- RNA polymerase then binds to the start point (of transcription).
- Rifampicin, an antibiotic inhibits RNA synthesis by binding to the beta subunit of the polymerase.
- Two key sequences identify the start site for transcription:
- TATA box (10 bases upstream of start point)
- TTGACA box (35 bases upstream of start point). This sequence determines the frequency of transcription.
Gene Expression (Transcription) in Eukaryotes
- Eukaryotes have three RNA polymerases (I, II, and III).
- Each polymerase is involved in the synthesis of different types of RNA:
- RNA polymerase I synthesizes rRNA
- RNA polymerase II synthesizes mRNA
- RNA polymerase III synthesizes tRNA
Transcription Initiation in Eukaryotes
- Preinitiation complex (PIC) formation is crucial for initiating transcription in eukaryotes.
- The PIC comprises RNA polymerase II and general transcription factors.
- TBP (TATA-box binding protein) of TFII D binds to the TATA box (-10 sequence)
- The other transcription factors TFII A, TFII B, TFII F, TFII E, TFII H bind to the other factors to form the complete PIC.
- These factors facilitate the unwinding of the DNA double helix.
- The initiation complex forms in the promoter region, but RNA polymerase II does not bind directly to the promoter sequence itself, rather to the PIC.
Other Transcription Factors
- CAAT box (CCAAT) is 40 bases from the initiation of transcription
- GC box (GGGCGG) is 200 bases away from the initiation of transcription. Both affect transcription frequency.
- TBP and TAFs (collectively known as TFIID) bind to the TATA box to initiate transcription.
- Other transcription factors (TFII A, TFII B, etc.) then bind to the complex, leading to the unwinding of the DNA double helix.
- Enhancer sequences can modify the initiation complex and affect the rate of transcription.
Transcription Elongation
- RNA polymerase unwinds DNA and creates a new strand of RNA.
- The process of making the new strand begins by phosphorylation of the RNA polymerase enzyme by a kinase.
Transcription Termination
- The "end" of the RNA transcript is determined by a specific sequence (AAUAAA) followed by a GU-rich sequence. Proteins then bind to this sequence and a poly(A) polymerase adds a poly-A tail (100-200 adenine nucleotides) to the 3' end of the mRNA.
- Polyadenylation is important to protect the 3' end of the mRNA (from enzyme degradation) and to initiate translation.
- Capping and polyadenylation are post-transcriptional modifications to mRNA.
RNA Splicing
- Splicing removes non-coding intron sequences and joins coding exon sequences from the primary RNA transcript.
- Small nuclear ribonucleoproteins (snRNPs) are essential in splicing
- Different splicing patterns result in multiple protein products from a single gene (alternative splicing). RNA polymerase III processes tRNA and RNA polymerase I processes rRNA.
Processing of other RNA molecules
- tRNA is processed by removing extensions, adding CCA to the 3' end, removing introns, and modifying bases (methylation of uracil) for proper function.
- rRNA is processed and cleaved (split into distinctive segments) in the nucleus to form functioning ribosomal subunits.
Studying That Suits You
Use AI to generate personalized quizzes and flashcards to suit your learning preferences.