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Questions and Answers

Which term describes reactions that break down molecules into smaller units, releasing energy in the process?

  • Kinase
  • Catalytic
  • Anabolic
  • Catabolic (correct)
  • Phosphorylase

Which of the following is NOT a biochemically accurate difference between DNA and RNA?

  • DNA contains the nitrogenous base Uracil where RNA contains the nitrogenous base Thymine. (correct)
  • DNA contains the nitrogenous base Thymine where RNA contains the nitrogenous base Uracil.
  • DNA is (almost always) double-stranded, whereas RNA is (almost always) single-stranded.
  • DNA lacks an oxygen on the ribose sugar in the phosphodiester backbone, whereas RNA contains this additional sugar.
  • All of the above are biochemically accurate differences between DNA and RNA.

All of the following elements are considered essential for life on Earth and are abundant in living things, EXCEPT:

  • Nitrogen
  • Sulfur
  • Potassium (correct)
  • Hydrogen
  • Oxygen

To study the distribution of a membrane protein on the extracellular surface of muscle cell plasma membranes, which microscopy technique is most suitable?

<p>Scanning Electron Microscopy (SEM) (B)</p> Signup and view all the answers

Which of the following kingdoms is NOT within the domain Eukarya?

<p>Archaea (C)</p> Signup and view all the answers

Which statement about prokaryotic cells is FALSE?

<p>Prokaryotic cells may contain some membrane-bound organelles, such as vesicles. (A)</p> Signup and view all the answers

During the process of diffusion, which substances are most likely to move passively across a cell membrane?

<p>water; chloride (D)</p> Signup and view all the answers

Which of the following statements is NOT true regarding bulk transport in cells?

<p>Forms of bulk transport do not require any energy expenditure. (B)</p> Signup and view all the answers

In the lac operon, the ________ will bind most strongly to the control region of the operon when the concentration of lactose within the cell is ________.

<p>repressor; low (C)</p> Signup and view all the answers

In a plant cell, where would one expect transcription and translation to occur, respectively?

<p>nucleus; ribosome (A)</p> Signup and view all the answers

While trying to visualize an onion root tip cell dividing using a light microscope, you find it difficult to focus the image even after setting the objective lens to the lowest magnification and turning on the lamp. Assuming you have followed the steps for Koehler Illumination, what is the MOST likely cause of the focusing problem?

<p>You did not lower the stage completely before adjusting the height using the coarse adjustment knobs. (A)</p> Signup and view all the answers

Which type of intermolecular bond is characterized by relatively weak electrostatic forces?

<p>Hydrogen bonds (B)</p> Signup and view all the answers

Hexokinase catalyzes the first reaction of glycolysis. Where does this process take place in eukaryotic cells?

<p>Cytoplasm (A)</p> Signup and view all the answers

If a researcher is studying the sodium-potassium pump, which type of transport are they investigating?

<p>Active transport (A)</p> Signup and view all the answers

A cell is placed in a solution and it begins to swell. What can be concluded about the relationship between the concentration of the solution and the concentration inside the cell?

<p>The solution is hypotonic relative to the cell. (C)</p> Signup and view all the answers

A cell signaling pathway is activated. What are the most likely molecules that are initially bound to the receptor, and subsequently bound after activation?

<p>GTP; GDP (A)</p> Signup and view all the answers

A researcher identifies a novel receptor protein with seven transmembrane domains, an extracellular N-terminus, and an intracellular C-terminus. Based on this structural information, what receptor type is it MOST likely?

<p>G-protein Coupled Receptor (GPCR) (A)</p> Signup and view all the answers

What is the immediate downstream effect after the binding of ligands to the individual extracellular domains of a Receptor Tyrosine Kinase (RTK)?

<p>The intracellular regions of the Receptor Tyrosine Kinase are phosphorylated. (A)</p> Signup and view all the answers

In a cell signaling pathway involving a G-protein coupled receptor (GPCR), what event directly follows receptor activation and interaction with a G-protein?

<p>Activation of adenylyl cyclase or phospholipase C. (E)</p> Signup and view all the answers

How does receptor tyrosine kinase (RTK) activation MOST directly initiate a downstream signaling cascade?

<p>By recruiting and phosphorylating intracellular proteins that bind to the phosphorylated RTK. (C)</p> Signup and view all the answers

In a prokaryotic cell, if a certain gene's expression is inhibited by a protein that binds to the DNA when a specific metabolite is abundant, that protein is best described as a _______, and the metabolite concentration is relatively ______.

<p>repressor; high (E)</p> Signup and view all the answers

Consider the endomembrane system. Which group of structures is considered part of it?

<p>6, 5, 4 and 3 (C)</p> Signup and view all the answers

Structure 11 is the location of cellular respiration in animal and plant cells. Which organelle is it?

<p>mitochondria (C)</p> Signup and view all the answers

Which organelle or structure plays an important role in intracellular motility, specifically during cell division?

<p>9 (B)</p> Signup and view all the answers

Proteins that are destined to remain within the cell, such as enzymes or transcription factors, are most likely to be synthesized at a ribosome in which structure/location?

<p>10 (C)</p> Signup and view all the answers

Structure 2, the location where the concentration of genetic material (DNA) is most dense, is found in all cells, including prokaryotes. Which structure is it?

<p>ribosome (C)</p> Signup and view all the answers

Which of the following structures is/are not membrane-bound?

<p>B and C (A)</p> Signup and view all the answers

For both, G-protein Coupled Receptors and Receptor Tyrosine Kinases, the N-terminus of the protein is typically located on/in the ______, whereas the C-terminus is typically located on/in the ______.

<p>extracellular side; intracellular side (E)</p> Signup and view all the answers

Why can't large polar or ionic molecules directly cross the cell membrane?

<p>They are not miscible with the hydrophobic medial layer of the membrane. (B)</p> Signup and view all the answers

If NaCl is dissolved in water, which ions will become a cation and which will become an anion?

<p>Na+ would become a cation, Cl- would become an anion. (A)</p> Signup and view all the answers

Which of the following cellular transport mechanisms is considered a form of passive transport?

<p>Facilitated Diffusion (A)</p> Signup and view all the answers

Which of the following is a key difference between prokaryotic and eukaryotic cells?

<p>Eukaryotic cells have a nucleus; prokaryotic cells do not. (E)</p> Signup and view all the answers

What property of phospholipids allows them to spontaneously form a bilayer in an aqueous environment?

<p>Their amphipathic nature, with hydrophilic heads and hydrophobic tails. (B)</p> Signup and view all the answers

How does the enzyme, sucrase, increase the rate of sucrose hydrolysis?

<p>By lowering the activation energy of the reaction. (D)</p> Signup and view all the answers

Which of the following statements regarding enzyme inhibitors is correct?

<p>Competitive inhibitors bind to the enzyme's active site, preventing substrate binding. (E)</p> Signup and view all the answers

What role do transport proteins serve in the facilitated diffusion of certain molecules across the cell membrane?

<p>They bind to molecules, undergo a conformational change, and release the molecule on the other side of the membrane. (D)</p> Signup and view all the answers

Which statement accurately differentiates cotransporters from protein pumps?

<p>Cotransporters primarily rely on the electrochemical gradient of one molecule to drive the transport of another. (A)</p> Signup and view all the answers

In a dialysis experiment, a dialysis bag containing an unidentified molecule solution gains mass when placed in a KCl solution. What is the most likely explanation for this mass increase?

<p>Potassium and chloride ions diffused into the dialysis bag, increasing its solute concentration. (A)</p> Signup and view all the answers

Which of the following is NOT a universally true characteristic of protein channels?

<p>Their selectivity is solely determined by the size of the channel pore. (A)</p> Signup and view all the answers

A protein channel facilitates the movement of chloride ions across a cell membrane. Which amino acid type would likely be prevalent in the channel's pore lining?

<p>Positively charged amino acids (C)</p> Signup and view all the answers

A researcher discovers a new membrane transport protein. Which characteristic would definitively classify it as a 'pump' rather than a channel or transporter?

<p>It requires ATP hydrolysis to move a molecule against its concentration gradient. (C)</p> Signup and view all the answers

Consider a cell with a malfunctioning sodium-potassium pump. How would this directly impact secondary active transport mechanisms?

<p>Secondary active transport would cease because it relies on the ion gradients established by the pump. (A)</p> Signup and view all the answers

A scientist is studying a novel protein that facilitates glucose transport into cells. Initial findings indicate it does not require ATP. Which of the following experimental results would MOST strongly suggest it is a uniport transporter rather than a symport or antiport cotransporter?

<p>The rate of glucose transport is unaffected by the presence or absence of other molecules. (B)</p> Signup and view all the answers

A researcher is comparing ion channels with porins. Which statement accurately highlights a key difference between them?

<p>Ion channels are typically gated, while porins are usually open. (C)</p> Signup and view all the answers

Flashcards

Cell Membrane Permeability

Large polar or ionic molecules cannot directly pass through the cell membrane due to their inability to mix with the hydrophobic core of the lipid bilayer.

NaCl Ionization

When NaCl dissolves in water, it ionizes into Na+ (cation) and Cl- (anion).

Polarity and Solvation

Water is highly polar, while chloride ions carry a negative charge and readily dissolve in water.

Bulk Transport Energy

Endo- and exocytosis are examples of bulk transport and require energy expenditure.

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Transcription vs. Translation Location

In a plant cell, transcription (DNA to RNA) occurs in the nucleus, while translation (RNA to protein) occurs at the ribosome.

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Microscope Calibration

When using a light microscope, begin with the lowest magnification to focus, then increase magnification.

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Hydrogen Bonds

Hydrogen bonds are weak intermolecular bonds formed due to electrostatic forces.

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Hexokinase Function

Hexokinase is an enzyme that catalyzes the first reaction of glycolysis in the cytoplasm of all cells.

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ATP vs. ADP

ATP converts to ADP during energy release.

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GPCR Structure

Receptors with seven transmembrane domains, N-terminus outside, and C-terminus inside the cell.

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RTK Activation

Activation of Receptor Tyrosine Kinases leads to phosphorylation of intracellular regions.

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GPCR

G-protein Coupled Receptor

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RTK Phosphorylation

Receptor Tyrosine Kinases phosphorylate their intracellular regions upon ligand binding.

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Catabolic Process

A metabolic process that breaks down complex molecules into simpler ones, releasing energy.

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DNA vs RNA Differences

DNA contains Thymine, is usually double-stranded, and has deoxyribose sugar, while RNA contains Uracil, is usually single-stranded, and has ribose sugar.

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Most Abundant Elements in Life

While hydrogen, oxygen, and nitrogen indeed make up the bulk of living matter, potassium is an essential element but not as abundant as C, H, O, N, P, S.

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Best Microscopy for Surface Protein Study

Fluorescent microscopy is suitable for detecting a specific membrane protein on the outer surface with fluorescent labels. SEM examines surface structures but requires coating the sample. TEM examines internal details of thinly sliced samples.

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Domains Containing Eukarya Kingdoms

Archaea is a separate domain from Eukarya. Protista, Fungi, Animalia, and Plantea are kingdoms within the Eukarya domain.

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False Statement About Prokaryotes

Prokaryotic cells do not contain membrane-bound organelles like vesicles, although some may have a cell wall (not of cellulose), circular DNA and plasmids, and flagella/cilia.

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Transcription Factor

A protein that binds to specific DNA sequences, regulating gene transcription.

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Endomembrane System

A network of membranes involved in protein and lipid synthesis, modification, and transport.

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Mitochondria

The organelle where cellular respiration occurs, producing energy (ATP).

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Centrosome

Organelle or structure involved in intracellular transport and cell division.

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Ribosome

The site of protein synthesis.

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Nucleoid

Genetic material (DNA) is most concentrated, but no membrane.

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Receptor Orientation

Proteins with an N-terminus on the extracellular side and a C-terminus intracellular.

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Cotransporters vs. Pumps

Cotransporters use the energy from one molecule moving down its concentration gradient to move another molecule, unlike pumps that use ATP.

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Dialysis Tubing Result

The unidentified molecule was too large to pass through the dialysis tubing pores, causing water to enter the tubing and increases its mass.

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Potassium Chloride Diffusion

The results suggest that the potassium and chloride ions diffused into the dialysis tubing, increasing its mass.

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Protein Channel Selectivity

Channel proteins are selective based on charge and other chemical properties, not solely size.

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Amino Acids in Chloride Channels

Amino acids with a positive charge are most likely found in the inner lining of the channel to attract negative chloride ions.

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Voltage-Gated Channels

Channels open or close in response to voltage changes across the membrane.

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Ligand-Gated Channels

Occurs when a specific molecule binds to the channel, causing it to open.

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Tension-Gated Channels

Channels open or close in response to physical forces or changes in tension applied to the cell membrane.

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Study Notes

  • Spring 2025 BISC-220 Practice Exam 1 is available with an answer key.
  • The lecturer for the course is Rita Barakat, PhD.
  • The answer key corresponds to the practice exam posted on Brightspace, also the last spring's first exam.
  • Exam takers must write their name and lab instructor's name on the exam sheet.
  • Exam takers must not start the exam until instructed.
  • Exam takers must ensure the exam has 14 pages.
  • Continuing on the exam after the time is up will result in a zero grade.
  • You must use a #2 pencil to fill in the Blue Scantron Answer Sheet.
  • When filling out the answer sheet, bubble in your last name, leave an empty one for a space, and then bubble in your first name.
  • You must enter your USC ID # as the identification number.
  • Columns K & L should reflect the last two digits of the LECTURE section (13028 = 8:00 am Tuesday/Thursday, 13022 = 9:30 am Tuesday/Thursday).
  • Columns O & P should reflect the last two digits of your LAB section (ie 62 for 13162).
  • Bubble in all answers with a #2 pencil on SIDE 1, fully filling in the entire circle while fully erasing mistakes.
  • The entire exam should be turned in when you are done with the Blue Scantron Answer Sheet inserted between the exam pages to the instructor.

Cell Membrane Transport

  • Large polar or ionic molecules cannot directly cross the cell membrane because they aren't miscible or "mixable" with the hydrophobic medial layer of the membrane.
  • If 30 mg of NaCl is dissolved in water, the compound will ionize becoming a sodium cation and a chloride anion.
  • Forms of bulk transport don't require any energy expenditure.
  • Transcription takes place in the nucleus while translation takes place at the ribosome in a plant cell.
  • A plasma membrane enriched with saturated fatty acid tails is more viscous.

Microscopy and Cellular Structures

  • If visualizing an onion root tip cell under a light microscope is difficult, lowering the stage completely before adjusting the height using the coarse adjustment knobs is necessary.
  • Hydrogen bonds are relatively weak intermolecular bonds formed due to electrostatic forces.
  • Hexokinase, which catalyzes the first reaction of glycolysis in the cytoplasm of prokaryotic and eukaryotic cells, would be synthesized at a ribosome floating freely in the cytoplasm of a eukaryotic cell.
  • The structure labeled 11 in the image is the mitochondria, which play a key role in cellular respiration in animal and plant cells.
  • The structure labeled 2 is the nucleolus, the location where the concentration of genetic material (DNA) is most dense in all cells, including prokaryotes.
  • The organelle or structuring playing an important role in intracellular activity, specifically during cell division, is marked as 7 in the image.
  • Structures 7 and 9 are not membrane-bound.

Macromolecules and Energy

  • Carbohydrates are the major macromolecules essential for cell respiration and are typically utilized as an "immediate energy source" by cells.
  • A long-term carbohydrate energy storage in animals typically requires converting glucose into glycogen polysaccharides.
  • Starch is most likely the carbohydrate isolated from a plant cell broken down into glucose by pepsin.

Lipids and Fatty Acids

  • Avocado oil is an example of an unsaturated cis fatty acid in our diet.
  • Estradiol, a steroid hormone secreted by the ovaries in biological females, transport mechanism is most likely to occur via simple diffusion into the cell.

Protein Structure and Synthesis

  • The monomer for proteins is H2N-C-COOH
  • Hemoglobin is an example of a protein that has achieved a quaternary level of folding structure.
  • Disulfide bonds form at the tertiary level of protein structure.
  • Proteins that remain within the cell are most likely synthesized at a ribosome marked as 10 on the image.

Enzymes

  • Hexokinase is an enzyme that catalyzes the first reaction of glycolysis, which takes place in the cytoplasm of all cells (prokaryotic and eukaryotic).
  • An enzyme that binds a single substrate and produces two or more products is typically considered a catabolic enzyme.

DNA and RNA

  • DNA contains the nitrogenous base Thymine whereas RNA contains the nitrogenous base Uracil.
  • Messenger RNA (mRNA), transfer RNA (tRNA) and ribosomal RNA (rRNA) participates in translation in prokaryotes and eukaryotes.

Signaling Pathways and Receptors

  • Dopamine signaling via D2-type receptors results in inhibition of Adenylyl Cyclase, leading to a net decrease in movement.
  • For G-protein Coupled Receptors and Receptor Tyrosine Kinases, the N-terminus of the protein is typically located on the extracellular side whereas the C-terminus is typically located on the intracellular side
  • Excessive water consumption results in a hypotonic extracellular environment, causing cells to burst due to rapid influx of water.
  • Signaling via D2-type receptors results in inhibition of Adenylyl Cyclase, leading to a net decrease in movement.
  • All of the following statements are true about protein channels except Channel proteins are typically only selective for certain molecules based on the size of the channel pore.
  • You are studying a protein channel that is known to flux (or allow for the movement of) Chloride ions along their concentration gradient. What type of amino acids would you expect to find in the inner lining of the channel pore?

Cellular and Molecular Processes

  • The innermost valence shell of all atoms except Hydrogen and Helium is considered "full" if it contains two electrons.
  • In the lac operon, the repressor will bind most strongly to the control region of the operon when the concentration of lactose within the cell is low.
  • Cotransporters require energy in the form of favorable entropy from the movement of one molecule along its concentration gradient to function.
  • When a G-protein becomes activated, there is an exchange of GDP for GTP which aids in the dissociation of the G-protein domains.
  • For both, G-protein Coupled Receptors and Receptor Tyrosine Kinases, the N-terminus
  • is typically located on/ in the extracellular side the whereas the C-terminus is typically located on/ in the intracellular side.

The Cell

  • All of the following kingdoms are within the domain Eukarya except Archaea.
  • Prokaryotic cells may contain some membrane-bound organelles, such as vesicles.
  • Transcription factors are proteins that bind to the promoter regions of DNA to facilitate transcription of specific genes.

Signaling

  • Autocrine signaling is common for cells in individual glands to require self-regulation as a means for maintaining intracellular homeostasis in the mammalian endocrine system.
  • Ionotropic signaling mechanisms are faster than metabotropic signaling mechanisms.
  • G-protein Coupled Receptor (GPCR) signaling cascades will result in a change in gene expression.
  • All of the elements are considered to be essential for life on Earth, and are the most abundant elements in most living things, except Potassium.
  • All of the following statements is/ are true about protein channels except C. Channel proteins are typically only selective for certain molecules based on the size of the channel pore.

Dialysis

  • There was most likely a net movement of molecules into the dialysis tubing.

Isomers

  • The image containing the "correct answer" (d.) depicts the trans geometric isomer of pentene.

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