SN-Phylogenetics Study Guide Quiz

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Questions and Answers

What type of rock are fossils generally found in?

  • Igneous rock
  • Volcanic rock
  • Sedimentary rock (correct)
  • Metamorphic rock

Why is the fossil record considered biased and incomplete?

  • Soft tissue decomposes and is rarely preserved (correct)
  • The fossil record is too extensive to study comprehensively
  • It only contains fossils of vertebrates
  • Fossils are often found in inaccessible locations

What can fossil records tell us about organisms?

  • Nothing about evolution
  • Diversity, speciation, and extinction (correct)
  • Only about the physiology of organisms
  • Only about the habitat of organisms

Why do we not have fossils for most invertebrates?

<p>Soft tissue decomposes and is rarely preserved (B)</p> Signup and view all the answers

What is the study of evolutionary relationships among organisms, constructing evolutionary trees based on classification and evolutionary history?

<p>Phylogenetics (C)</p> Signup and view all the answers

Which type of data is used to determine evolutionary relationships by comparing DNA sequences for similarity?

<p>Molecular data from DNA (D)</p> Signup and view all the answers

What can molecular analysis reveal that differs from expectations based on morphological and fossil data?

<p>Relationships (A)</p> Signup and view all the answers

In which fields are phylogenetic trees used, as per the text?

<p>Conservation, agriculture, forensics, and medicine (C)</p> Signup and view all the answers

How is phylogenetic analysis used in agriculture?

<p>To identify differences in plant varieties produced by selective breeding (C)</p> Signup and view all the answers

What is a way phylogenetic trees are used in conservation, as mentioned in the text?

<p>To understand environmental pressures and combat poaching (B)</p> Signup and view all the answers

What is the primary use of phylogenetic trees in forensics?

<p>To prove or disprove criminal involvement and trace origins of pathogens (D)</p> Signup and view all the answers

How are phylogenies crucial in the understanding of viruses, diseases, and cancer?

<p>They can be used to study disease spread (C)</p> Signup and view all the answers

What is illustrated by the similar morphological features of distantly related species like armadillos, anteaters, and pangolins?

<p>Convergent evolution (D)</p> Signup and view all the answers

What led to many wrong classifications in Linnaeus' attempt to classify plants?

<p>Homoplasies (A)</p> Signup and view all the answers

What is used to construct phylogenetic trees in today's trend?

<p>Molecular data (A)</p> Signup and view all the answers

What is the study of evolutionary relationships among organisms, constructing evolutionary trees based on classification and evolutionary history?

<p>Phylogenetics (D)</p> Signup and view all the answers

What is taxonomy?

<p>The study of classification of organisms (D)</p> Signup and view all the answers

Who is considered the 'father' of biological taxonomy?

<p>Carl Linnaeus (D)</p> Signup and view all the answers

In binomial nomenclature, which label is always capitalized?

<p>The genus (D)</p> Signup and view all the answers

What is the correct hierarchical classification for humans?

<p>Kingdom: Animalia, Phylum: Chordata, Order: Primates, Family: Hominidae, Genus: Homo, Species: Homo sapiens (D)</p> Signup and view all the answers

What mnemonic device is commonly used to remember the order of hierarchical levels in taxonomy?

<p>Kings Play Chess On Fine Girls' Stomachs (B)</p> Signup and view all the answers

What is the traditional classification system of living things separated into?

<p>Five different kingdoms (D)</p> Signup and view all the answers

What are the three domains in the three-domain system of classification?

<p>Bacteria, Archaea, Eukarya (B)</p> Signup and view all the answers

Why is the three-domain system gaining popularity?

<p>Due to the increasing evidence of two very different branches of prokaryotic life (C)</p> Signup and view all the answers

What did Carl Linnaeus reject?

<p>The idea of evolution (A)</p> Signup and view all the answers

What is the second label in binomial nomenclature?

<p>The species (C)</p> Signup and view all the answers

What is systematics?

<p>The study of both taxonomy and phylogenetics (B)</p> Signup and view all the answers

What is phylogenetics?

<p>The study of evolutionary relationships between organisms (B)</p> Signup and view all the answers

What is radiometric dating used to determine?

<p>The absolute timing of speciation (B)</p> Signup and view all the answers

Which isotope is used to date items that are 100 to 60,000 years old?

<p>Carbon-14 (D)</p> Signup and view all the answers

What is the primary factor that allows scientists to assess the age of rocks or fossils using radiometric dating?

<p>The constant and predictable decay rates of isotopes (A)</p> Signup and view all the answers

What is the half-life of Carbon-14?

<p>5,700 years (C)</p> Signup and view all the answers

Which isotopes are used to date items that are 10 million to 4.5 billion years old?

<p>Potassium-40 and Uranium-238 (D)</p> Signup and view all the answers

What does radiocarbon dating using carbon-14 require knowledge of?

<p>Its known half-life, measuring remaining carbon-14, and the rate of decay (D)</p> Signup and view all the answers

What is used to determine evolutionary relationships based on homologies?

<p>Morphological data (A)</p> Signup and view all the answers

What are homologies in evolutionary biology?

<p>Structural similarities due to common ancestry (A)</p> Signup and view all the answers

What causes homoplasies and analogies in evolutionary biology?

<p>Convergent evolution (B)</p> Signup and view all the answers

What are analogies in evolutionary biology?

<p>Similarities in function not due to common ancestry (D)</p> Signup and view all the answers

When does convergent evolution occur?

<p>When similar adaptations develop independently in unrelated organisms living in similar environments (D)</p> Signup and view all the answers

What are morphological traits used for in phylogenetics?

<p>To classify organisms based on shared traits due to common ancestry (C)</p> Signup and view all the answers

What does the parsimony method involve in analyzing evolutionary relationships?

<p>Choosing the simplest hypothesis to explain the tree (B)</p> Signup and view all the answers

What do ancestral vs derived characters, synapomorphy, and outgroup comparison help identify in phylogenetic analysis?

<p>Traits and evolutionary relationships (C)</p> Signup and view all the answers

What do branch lengths in a phylogenetic tree indicate?

<p>Relative and absolute timing of evolution (B)</p> Signup and view all the answers

What is the primary purpose of the inexact nature of phylogenetics and its assumption of a constant rate of molecular evolution?

<p>To provide a framework for understanding evolutionary relationships (B)</p> Signup and view all the answers

What does the parsimony method entail when drawing possible trees and mapping traits to determine the most parsimonious tree?

<p>Selecting the tree with the fewest evolutionary changes (C)</p> Signup and view all the answers

What may cause conflicts between fossil and genetic data in phylogenetics?

<p>Rapid speciation events and evolutionary reversals (C)</p> Signup and view all the answers

What is the purpose of an outgroup comparison in identifying traits in phylogenetic analysis?

<p>To distinguish ancestral from derived characters (C)</p> Signup and view all the answers

What is the result of applying the most parsimonious explanation for shared traits?

<p>Identification of the most likely evolutionary scenario (B)</p> Signup and view all the answers

What is the inability of phylogenetics to account for rapid speciation events and evolutionary reversals an example of?

<p>Limitation in capturing all aspects of evolutionary history (C)</p> Signup and view all the answers

What is the example of a possible evolutionary reversal with a toothy frog as an ancestor used for?

<p>Illustrating the challenges of identifying evolutionary reversals (A)</p> Signup and view all the answers

Taxonomy is the study of evolutionary relationships between organisms

<p>False (B)</p> Signup and view all the answers

The first label in binomial nomenclature is always the genus and is capitalized

<p>True (A)</p> Signup and view all the answers

Carl Linnaeus rejected the idea of evolution

<p>True (A)</p> Signup and view all the answers

The three-domain system of classification separates living things into Bacteria, Archaea, and Eukarya

<p>True (A)</p> Signup and view all the answers

The five traditional kingdoms of living things are Monera, Protists, Plants, Fungi, and Animals

<p>True (A)</p> Signup and view all the answers

The study of the classification of organisms is known as phylogenetics

<p>False (B)</p> Signup and view all the answers

The increasing popularity of the three-domain system is due to the increasing evidence of two very different branches of prokaryotic life

<p>True (A)</p> Signup and view all the answers

Linnaeus set up a system of trinomial nomenclature for describing a species

<p>False (B)</p> Signup and view all the answers

The rules for binomial nomenclature are relatively lenient in the scientific community

<p>False (B)</p> Signup and view all the answers

List the hierarchical classification system used in taxonomy (each of the 7 classifications).

<p>Kingdom, Phylum, Class, Order, Family, Genus, and Species</p> Signup and view all the answers

What are the two different kinds of study that make up systematics.

<p>Taxonomy and Phylogenetics</p> Signup and view all the answers

Why is the three-domain system gaining popularity and what evidence supports it?

<p>Due to the increasing evidence of two very different branches of prokaryotic life. The evidence shows that Archaea are actually more closely related to Eukarya than to Bacteria.</p> Signup and view all the answers

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Study Notes

Radiometric Dating and Morphological Data in Evolutionary Biology

  • Fossils collected from Hogtown Creek in Gainesville were used to understand the order of species' appearance based on their depth in the ground.
  • Radiometric dating is used to determine the absolute timing of speciation and relies on measuring the decay of radioactive isotopes.
  • Decay rates of isotopes are constant and predictable, allowing scientists to assess the age of rocks or fossils by measuring the proportion of remaining radioactive isotopes.
  • Carbon-14, with a half-life of 5,700 years, is used to date items that are 100 to 60,000 years old.
  • Potassium-40 and Uranium-238, with half-lives in the billions of years, are used to date items that are 10 million to 4.5 billion years old.
  • Radiocarbon dating using carbon-14 requires knowledge of its known half-life, measuring remaining carbon-14, and the rate of decay.
  • Morphological data, such as structural differences in organisms, is used to determine evolutionary relationships based on homologies.
  • Homologies are structural similarities due to common ancestry, while homoplasies and analogies arise from convergent evolution.
  • Homoplasies and analogies occur due to convergent evolution, where similar features evolve independently in different groups of organisms due to similar selective pressures.
  • Analogies are similarities in function not due to common ancestry, while homoplasies are similarities in appearance not due to common ancestry.
  • Convergent evolution occurs when similar adaptations develop independently in unrelated organisms living in similar environments.
  • Morphological traits are used in phylogenetics to classify organisms based on shared traits due to common ancestry, avoiding homoplasies and analogies.

Understanding Phylogenetic Trees and Evolutionary Relationships

  • Branch length can indicate relative and absolute timing of evolution
  • Sister taxa are groups originating from the same node in a phylogenetic tree
  • Ancestral vs derived characters, synapomorphy, and outgroup comparison help identify traits
  • Character tables and the parsimony method aid in analyzing evolutionary relationships
  • The parsimony method involves choosing the simplest hypothesis to explain the tree
  • It includes steps like drawing possible trees and mapping traits to determine the most parsimonious tree
  • Example of applying the most parsimonious explanation for shared traits
  • A practice question illustrates the use of the parsimony method
  • Problems associated with phylogenetics, including conflicts between fossil and genetic data
  • The inexact nature of phylogenetics and its assumption of a constant rate of molecular evolution
  • Phylogenetics' inability to account for rapid speciation events and evolutionary reversals
  • Example of a possible evolutionary reversal with a toothy frog as an ancestor

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