Podcast
Questions and Answers
What do transcription factors primarily control?
What do transcription factors primarily control?
- The interaction of RNA with ribosomes
- The structure of RNA molecules
- The transcription of genes (correct)
- The stability of DNA
How do transcription factors enhance promoter effectiveness?
How do transcription factors enhance promoter effectiveness?
- By positioning RNA polymerase effectively (correct)
- By preventing the binding of micro-RNAs
- By decreasing the affinity of RNA polymerase
- By increasing the stability of mRNA molecules
What role do micro-RNAs play in gene regulation?
What role do micro-RNAs play in gene regulation?
- They have no effect on gene regulation
- They serve as a primary energy source for transcription
- They inhibit transcription factors directly
- They can affect the stability of mRNA (correct)
What is a key approach mentioned for analyzing regulatory networks of genes?
What is a key approach mentioned for analyzing regulatory networks of genes?
Why are regulatory networks significant in cancer research?
Why are regulatory networks significant in cancer research?
What is the predominant level at which eukaryotes regulate gene expression?
What is the predominant level at which eukaryotes regulate gene expression?
What does constitively expressed mean in terms of gene regulation?
What does constitively expressed mean in terms of gene regulation?
Which of the following is NOT a potential outcome when there’s a change in gene activity?
Which of the following is NOT a potential outcome when there’s a change in gene activity?
What is meant by 'regulatory networks' in the context of gene expression?
What is meant by 'regulatory networks' in the context of gene expression?
Which of the following is a key mechanism of post-transcriptional regulation?
Which of the following is a key mechanism of post-transcriptional regulation?
What is one significant effect of pseudo-uridination on RNA?
What is one significant effect of pseudo-uridination on RNA?
Which of the following is NOT mentioned as a method of modifying RNA?
Which of the following is NOT mentioned as a method of modifying RNA?
How many unique modifications can RNA undergo according to the content?
How many unique modifications can RNA undergo according to the content?
What role does modifying RNA play in regulating its function?
What role does modifying RNA play in regulating its function?
Which of the following is a chemical modification mentioned for DNA?
Which of the following is a chemical modification mentioned for DNA?
What is the primary reason the lac operon is not activated in the absence of lactose?
What is the primary reason the lac operon is not activated in the absence of lactose?
In what situation would the TRIP operon be turned off?
In what situation would the TRIP operon be turned off?
What role does cyclic AMP play in relation to the lac operon?
What role does cyclic AMP play in relation to the lac operon?
What is a crucial factor influencing the translation capability of mRNA in the TRIP operon?
What is a crucial factor influencing the translation capability of mRNA in the TRIP operon?
Why do transcription and translation influence each other in prokaryotes?
Why do transcription and translation influence each other in prokaryotes?
What correlation is noted between dysfunction in processing and human conditions?
What correlation is noted between dysfunction in processing and human conditions?
In the context of transcription factors, what does a circle in the diagram represent?
In the context of transcription factors, what does a circle in the diagram represent?
What is indicated by the connections or shapes in the figure discussed?
What is indicated by the connections or shapes in the figure discussed?
What are the 'big takeaways' related to regarding operons as mentioned?
What are the 'big takeaways' related to regarding operons as mentioned?
What major concept is illustrated by the circular statement regarding RNA modification?
What major concept is illustrated by the circular statement regarding RNA modification?
What role do charged tRNAs play when tryptophan levels are sufficient?
What role do charged tRNAs play when tryptophan levels are sufficient?
How can small interfering RNAs (siRNAs) affect mRNA?
How can small interfering RNAs (siRNAs) affect mRNA?
What is one way eukaryotes regulate translation?
What is one way eukaryotes regulate translation?
What overall effect does changing the accessibility of RNA have on cellular function?
What overall effect does changing the accessibility of RNA have on cellular function?
What happens to translation when there is a surplus of dietary components?
What happens to translation when there is a surplus of dietary components?
What is a characteristic feature of repressible operons, such as the trp operon?
What is a characteristic feature of repressible operons, such as the trp operon?
How do iron response elements (IREs) influence gene regulation in response to iron deficiency?
How do iron response elements (IREs) influence gene regulation in response to iron deficiency?
Which phrase best describes the concept of functional heterogeneity in cell populations?
Which phrase best describes the concept of functional heterogeneity in cell populations?
What do regulatory proteins interact with to control gene expression?
What do regulatory proteins interact with to control gene expression?
What is the primary role of attenuation in gene regulation?
What is the primary role of attenuation in gene regulation?
What is the primary mechanism of transcriptional regulation in eukaryotes?
What is the primary mechanism of transcriptional regulation in eukaryotes?
Which of the following best describes constitutive gene expression?
Which of the following best describes constitutive gene expression?
How do epigenetic changes in DNA methylation affect gene expression?
How do epigenetic changes in DNA methylation affect gene expression?
What is a consequence of errors in post-transcriptional processing?
What is a consequence of errors in post-transcriptional processing?
What potential effect do regulatory networks have on cancer genetics?
What potential effect do regulatory networks have on cancer genetics?
What role do microRNAs have alongside transcription factors in gene regulation?
What role do microRNAs have alongside transcription factors in gene regulation?
What is the implication of heritable gene expression profiles in multicellular organisms?
What is the implication of heritable gene expression profiles in multicellular organisms?
What is the impact of pseudouridylation on RNA molecules?
What is the impact of pseudouridylation on RNA molecules?
Which of the following statements about gene regulatory networks is true?
Which of the following statements about gene regulatory networks is true?
In the context of gene regulation, what is a significant feature of inducible genes?
In the context of gene regulation, what is a significant feature of inducible genes?
Flashcards
Eukaryotic gene regulation
Eukaryotic gene regulation
Primarily happens at the transcription level, but other levels like post-transcriptional, translational, and post-translational are also important.
Constitutively expressed genes
Constitutively expressed genes
Genes that are always on; they are essential for basic cellular functions.
Post-transcriptional regulation
Post-transcriptional regulation
Controlling gene expression after transcription; includes mRNA processing, localization, export, import, translation, and protein modification.
Gene expression levels
Gene expression levels
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Gene expression pathway
Gene expression pathway
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Transcription factors
Transcription factors
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Regulatory networks
Regulatory networks
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Transcription factors
Transcription factors
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RNA polymerase
RNA polymerase
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Regulatory networks
Regulatory networks
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Computational analysis
Computational analysis
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Micro-RNAs
Micro-RNAs
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Gene regulation
Gene regulation
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Binding domains
Binding domains
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Cellular processes
Cellular processes
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Cancer research
Cancer research
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RNA Modification
RNA Modification
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Pseudo-uridine
Pseudo-uridine
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RNA Regulation (Chemical)
RNA Regulation (Chemical)
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tRNA Modification Examples
tRNA Modification Examples
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DNA Modifications (heritable)
DNA Modifications (heritable)
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Inactive X Chromosome
Inactive X Chromosome
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Transcription factor function
Transcription factor function
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RNA modification examples
RNA modification examples
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Operon regulation (on/off)
Operon regulation (on/off)
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Human conditions & RNA processing steps
Human conditions & RNA processing steps
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Regulatory network visualization
Regulatory network visualization
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mRNA regulation
mRNA regulation
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Translational regulation
Translational regulation
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Small interfering RNAs (siRNAs)
Small interfering RNAs (siRNAs)
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Antisense RNA
Antisense RNA
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RNA accessibility
RNA accessibility
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Environmental factors & translation
Environmental factors & translation
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Negative feedback regulation
Negative feedback regulation
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Lac Operon Regulation
Lac Operon Regulation
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Lac Operon 'off' signal
Lac Operon 'off' signal
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TRP Operon Regulation
TRP Operon Regulation
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TRP Operon 'on' signal
TRP Operon 'on' signal
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Attenuation
Attenuation
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Transcription and Translation Coupling
Transcription and Translation Coupling
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Constitutive gene
Constitutive gene
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Coordinate regulation
Coordinate regulation
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Operator (gene)
Operator (gene)
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Promoter (gene)
Promoter (gene)
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Regulatory element
Regulatory element
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Regulatory protein
Regulatory protein
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Inducible gene
Inducible gene
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Repressible gene
Repressible gene
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aporepressor
aporepressor
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Iron response element
Iron response element
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Attenuation
Attenuation
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Gene Regulation by Environment
Gene Regulation by Environment
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Promoters
Promoters
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Operators
Operators
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Regulatory Elements
Regulatory Elements
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Regulatory Proteins
Regulatory Proteins
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Constitutive Genes
Constitutive Genes
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Inducible Genes
Inducible Genes
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Repressible Genes
Repressible Genes
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DNA Mutations
DNA Mutations
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Gene Expression Pathway
Gene Expression Pathway
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Eukaryotic Gene Regulation
Eukaryotic Gene Regulation
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Post-transcriptional Regulation
Post-transcriptional Regulation
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RNA Modifications
RNA Modifications
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Heritable Gene Expression
Heritable Gene Expression
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Gene Regulatory Networks
Gene Regulatory Networks
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Study Notes
Eukaryotic Transcription Regulation
- Eukaryotes primarily regulate gene expression at the transcriptional level, unlike prokaryotes.
- Essential genes are often constitutively expressed, meaning always turned on.
- Regulation involves various steps, including transcription, post-transcriptional processing, localization, import/export, translation, and degradation.
- Changes in gene activity can increase, decrease or have no effect on activity levels.
- Deregulation can lead to adverse outcomes.
- Gene expression is considered a pathway, with multiple factors affecting each step.
Transcription Factors
- Transcription factors control transcription by influencing RNA polymerase binding to DNA.
- High-affinity promoters are activated rapidly, while lower-affinity promoters respond more slowly.
- A single transcription factor can control numerous genes.
- Regulatory networks involve complex interactions between multiple genes and factors, affecting various cellular processes like migration.
RNA Modifications
- RNA molecules undergo numerous modifications, impacting RNA function and stability.
- Chemical modifications and splicing significantly impact RNA function.
- Pseudo-uridylation is an example of RNA modification influencing translation and mRNA stability.
- Modifications can affect base pairing and overall conformation of the molecule.
- Modifications are crucial for regulating cellular processes and influencing expression.
Heritable Gene Expression Patterns
- Clonal identities show functional heterogeneity, even with genetically identical cells.
- Expression patterns can differ in clonal populations, affecting responses to treatments.
- The liver and brain have different gene expression patterns.
- Environmental factors can influence heritable expression patterns.
Prokaryotic Gene Regulation
- Prokaryotic systems commonly use inducible and repressible systems for gene regulation.
- Catabolic enzymes are often inducible, while anabolic enzymes are typically repressible.
- The operon model links multiple genes involved in a single metabolic pathway.
- Operators inhibit expression of controlled genes.
- Lactose presence in the system affects the regulation of the operon.
- Glucose presence inhibits expression of controlled genes.
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