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Questions and Answers
What are the two main types of gene regulation that occur in eukaryotes?
What are the two main types of gene regulation that occur in eukaryotes?
What is the name of the most common mechanism of genomic imprinting?
What is the name of the most common mechanism of genomic imprinting?
DNA methylation
The presence of a Barr body is an indication of a compacted inactive X chromosome in females.
The presence of a Barr body is an indication of a compacted inactive X chromosome in females.
True (A)
The movement of a transposon from one location to another is called ______
The movement of a transposon from one location to another is called ______
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Name the scientist who first discovered transposons in corn?
Name the scientist who first discovered transposons in corn?
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Which of the following are examples of eukaryotic cis-acting elements? (Select all that apply)
Which of the following are examples of eukaryotic cis-acting elements? (Select all that apply)
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Which of the following are examples of eukaryotic trans-acting factors? (Select all that apply)
Which of the following are examples of eukaryotic trans-acting factors? (Select all that apply)
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Hormonal control is a type of translational regulation that affects gene expression.
Hormonal control is a type of translational regulation that affects gene expression.
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Which of the following is an example of a post-translational modification that affects protein functionality?
Which of the following is an example of a post-translational modification that affects protein functionality?
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What is the common name for a molecule that is inactive but can be activated through a post-translational modification?
What is the common name for a molecule that is inactive but can be activated through a post-translational modification?
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Which of the following is an example of tissue-specific gene regulation? (Select all that apply)
Which of the following is an example of tissue-specific gene regulation? (Select all that apply)
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What is the most common methylation mechanism in eukaryotic cells?
What is the most common methylation mechanism in eukaryotic cells?
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What is the theoretical age limit for eukaryotes?
What is the theoretical age limit for eukaryotes?
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What type of cell makes up almost all eukaryotic organisms?
What type of cell makes up almost all eukaryotic organisms?
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Eukaryotes have a much smaller genome size compared to prokaryotes.
Eukaryotes have a much smaller genome size compared to prokaryotes.
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Where is the DNA located in eukaryotic cells?
Where is the DNA located in eukaryotic cells?
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What is the role of transposons in DNA?
What is the role of transposons in DNA?
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What is the function of the promoter region in a eukaryotic gene?
What is the function of the promoter region in a eukaryotic gene?
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Which of the following is NOT a type of DNA-binding domain found in transcription factors?
Which of the following is NOT a type of DNA-binding domain found in transcription factors?
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What is a key function of enhancers in gene regulation?
What is a key function of enhancers in gene regulation?
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Which level of gene regulation involves the modification of proteins after they have been synthesized?
Which level of gene regulation involves the modification of proteins after they have been synthesized?
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What is the process called where introns are removed and exons are joined together in eukaryotic mRNA?
What is the process called where introns are removed and exons are joined together in eukaryotic mRNA?
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The regulation of gene expression in eukaryotes is more complex than in prokaryotes.
The regulation of gene expression in eukaryotes is more complex than in prokaryotes.
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What is the name of the iron-containing molecule that is essential for hemoglobin synthesis?
What is the name of the iron-containing molecule that is essential for hemoglobin synthesis?
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The timing of an event can influence gene expression.
The timing of an event can influence gene expression.
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Match the following gene regulatory elements with their descriptions. (Match the letters with the numbers)
Match the following gene regulatory elements with their descriptions. (Match the letters with the numbers)
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What is the function of the proteasome in a cell?
What is the function of the proteasome in a cell?
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What is the process of converting an inactive precursor protein into an active form called?
What is the process of converting an inactive precursor protein into an active form called?
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Eukaryotic gene regulation can be influenced by developmental stage.
Eukaryotic gene regulation can be influenced by developmental stage.
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The regulation of gene expression is identical in all cells of a multicellular organism.
The regulation of gene expression is identical in all cells of a multicellular organism.
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What is the primary function of the TATA box in a eukaryotic gene?
What is the primary function of the TATA box in a eukaryotic gene?
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Flashcards
Eukaryotic Genome Organization
Eukaryotic Genome Organization
Eukaryotic DNA is organized into multiple linear chromosomes within the nucleus and mitochondria (and chloroplasts in plants). It is highly compact to fit within the cell.
Eukaryotic Gene Regulation
Eukaryotic Gene Regulation
The complex process of controlling when and how genes are expressed in a eukaryotic cell, from DNA all the way to the final protein product.
Transcriptional Regulation (Long Term)
Transcriptional Regulation (Long Term)
Long-term changes in gene expression involving DNA compaction, methylation, and major rearrangements (e.g., transpositions).
Transcriptional Regulation (Short Term)
Transcriptional Regulation (Short Term)
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Post-Transcriptional Regulation
Post-Transcriptional Regulation
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Translational Regulation
Translational Regulation
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Post-Translational Regulation
Post-Translational Regulation
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Cis-acting Elements
Cis-acting Elements
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Trans-acting Factors
Trans-acting Factors
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Tissue-Specific Gene Expression
Tissue-Specific Gene Expression
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Developmental Regulation
Developmental Regulation
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Coordinated Gene Expression
Coordinated Gene Expression
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DNA Rearrangement
DNA Rearrangement
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Transposons (Transposable Elements)
Transposons (Transposable Elements)
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Alternative Splicing
Alternative Splicing
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mRNA Stability
mRNA Stability
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Hormonal Control
Hormonal Control
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Protein Degradation
Protein Degradation
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Zymogen Activation
Zymogen Activation
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Promoter
Promoter
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Enhancer
Enhancer
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Suppressor
Suppressor
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TATA Box
TATA Box
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What did Mendel study?
What did Mendel study?
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What is an allele?
What is an allele?
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What is the difference between a character and a trait?
What is the difference between a character and a trait?
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What does homozygous mean?
What does homozygous mean?
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What is a phenotype?
What is a phenotype?
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What is a genotype?
What is a genotype?
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What is the Law of Segregation?
What is the Law of Segregation?
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What is the Law of Independent Assortment?
What is the Law of Independent Assortment?
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What does dominant mean?
What does dominant mean?
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What does recessive mean?
What does recessive mean?
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What is a test cross?
What is a test cross?
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What is codominance?
What is codominance?
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What is incomplete dominance?
What is incomplete dominance?
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What is epistasis?
What is epistasis?
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What is polygenic inheritance?
What is polygenic inheritance?
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What is pleiotropy?
What is pleiotropy?
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How does the environment affect phenotype?
How does the environment affect phenotype?
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What is epigenetics?
What is epigenetics?
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What is DNA methylation?
What is DNA methylation?
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What is histone acetylation?
What is histone acetylation?
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What are non-coding RNAs?
What are non-coding RNAs?
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How can the microbiome affect gene expression?
How can the microbiome affect gene expression?
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What is genomic imprinting?
What is genomic imprinting?
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What are telomeres?
What are telomeres?
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What is a blood type?
What is a blood type?
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What is a universal blood donor?
What is a universal blood donor?
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What is a universal blood acceptor?
What is a universal blood acceptor?
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Study Notes
Eukaryotic Organisms
- Almost all are multicellular
- Multiple types of tissues
- Long life spans
- Large genome size (e.g., 3 billion base pairs)
- DNA in nucleus and mitochondria (in all eukaryotes)
- Plants have chloroplast DNA
- Nuclear DNA in multiple linear chromosomes, compact
- Genetic variations due to sexual reproduction and genomic rearrangements
Eukaryotic Needs and Genome Organization
- DNA double helix (2 nm)
- Nucleosomes (10 nm)
- 30-nm chromatin fiber
- Looped domains (300 nm)
- Metaphase chromosome (700 nm per chromatid, 1400 nm per chromosome)
Composition of Human Genome
- Protein coding genes: 2%
- Introns: 26%
- Miscellaneous unique sequences: 12%
- LINES: 20%
- SINES: 20%
- LTR retrotransposons: 8%
- DNA transposons 3%
- Simple sequence repeats: 3%
- Segmental duplications: 5%
- Heterochromatin: 8%
Regulation of Eukaryotic Gene Expression
- Transcriptional Regulation:
- Long-term: DNA compaction and methylation
- Short-term: Transcription factors (short term)
- Post-Transcriptional Regulation:
- Alternative splicing and mRNA stability
- Translational Regulation:
- Hormonal control, timing, cofactors (ex. Timing of fertilization)
- Post-Translational Regulation:
- Phosphorylation
- Zymogen activation
- Protein degradation
- Developmental regulation: (e.g., seed → tree)
- Coordinated regulation: (e.g., glycolysis)
- Tissue-specific gene expression: Different tissues express specific genes.
DNA Methylation
- Most common method of genomic imprinting
- Parental germline establishes imprinting methylation
- Methylation remains in the zygote
Transcriptional - Long Term & Developmental Regulation
- Human a-globin and b-globin gene evolution
- DNA rearrangements in antibody (B-cell) maturation
Transcriptional – Long Term Regulation
- Transposable elements (TEs) in DNA rearrangement
- Mechanism of TE movement: TE moves to another location, and replication fills in gaps
- First discovered in corn by Barbara McClintock (1902-1992), awarded Nobel Prize in 1983
- Jumping genes: 11% of our genome is made up of jumping genes
Mechanism of Transposition
- Movement of TEs from one location in DNA to another location
- Transposons/Transposable Elements
Transcriptional – Short Term Regulation
- A eukaryotic gene and its transcript
Post-Transcriptional Regulation
- Alternative splicing and mRNA stability
Transcriptional – Short Term Regulation
- Three major DNA-binding domains in transcription factors (e.g., zinc finger, helix-turn-helix, leucine zipper)
- Model for enhancer action
Hormonal Control
- Prolactin and lactation after childbirth
- Availability of heme (iron complex)
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Description
Explore the fascinating world of eukaryotic organisms, focusing on their complex genome organization and gene expression regulation. This quiz covers essential aspects of their cellular structure, genetic makeup, and the intricacies of gene regulation processes.