Eukaryotic Organisms and Genome Organization
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Questions and Answers

What are the two main types of gene regulation that occur in eukaryotes?

  • Transcriptional and Translational
  • Post-Transcriptional and Translational
  • Transcriptional and Post-Transcriptional (correct)
  • What is the name of the most common mechanism of genomic imprinting?

    DNA methylation

    The presence of a Barr body is an indication of a compacted inactive X chromosome in females.

    True (A)

    The movement of a transposon from one location to another is called ______

    <p>transposition</p> Signup and view all the answers

    Name the scientist who first discovered transposons in corn?

    <p>Barbara McClintock</p> Signup and view all the answers

    Which of the following are examples of eukaryotic cis-acting elements? (Select all that apply)

    <p>TATA box (A), Enhancer (C), Promoter (D), Suppressor (E)</p> Signup and view all the answers

    Which of the following are examples of eukaryotic trans-acting factors? (Select all that apply)

    <p>Sigma factor (D)</p> Signup and view all the answers

    Hormonal control is a type of translational regulation that affects gene expression.

    <p>True (A)</p> Signup and view all the answers

    Which of the following is an example of a post-translational modification that affects protein functionality?

    <p>Phosphorylation (C)</p> Signup and view all the answers

    What is the common name for a molecule that is inactive but can be activated through a post-translational modification?

    <p>Zymogen</p> Signup and view all the answers

    Which of the following is an example of tissue-specific gene regulation? (Select all that apply)

    <p>Genes expressed only in muscle cells (B), Genes expressed only in the liver (C)</p> Signup and view all the answers

    What is the most common methylation mechanism in eukaryotic cells?

    <p>Genomic Imprinting (C)</p> Signup and view all the answers

    What is the theoretical age limit for eukaryotes?

    <p>120 years</p> Signup and view all the answers

    What type of cell makes up almost all eukaryotic organisms?

    <p>multicellular</p> Signup and view all the answers

    Eukaryotes have a much smaller genome size compared to prokaryotes.

    <p>False (B)</p> Signup and view all the answers

    Where is the DNA located in eukaryotic cells?

    <p>All of the above (D)</p> Signup and view all the answers

    What is the role of transposons in DNA?

    <p>They can move from one location to another within the genome. (A)</p> Signup and view all the answers

    What is the function of the promoter region in a eukaryotic gene?

    <p>It is the site where RNA polymerase binds to initiate transcription.</p> Signup and view all the answers

    Which of the following is NOT a type of DNA-binding domain found in transcription factors?

    <p>Histone acetylation motif (A)</p> Signup and view all the answers

    What is a key function of enhancers in gene regulation?

    <p>They can increase the rate of transcription of a gene.</p> Signup and view all the answers

    Which level of gene regulation involves the modification of proteins after they have been synthesized?

    <p>Post-Translational regulation (C)</p> Signup and view all the answers

    What is the process called where introns are removed and exons are joined together in eukaryotic mRNA?

    <p>RNA splicing</p> Signup and view all the answers

    The regulation of gene expression in eukaryotes is more complex than in prokaryotes.

    <p>True (A)</p> Signup and view all the answers

    What is the name of the iron-containing molecule that is essential for hemoglobin synthesis?

    <p>Heme</p> Signup and view all the answers

    The timing of an event can influence gene expression.

    <p>True (A)</p> Signup and view all the answers

    Match the following gene regulatory elements with their descriptions. (Match the letters with the numbers)

    <p>A. Promoter = 1. A DNA sequence that acts as a binding site for RNA polymerase. B. Enhancer = 2. A protein that binds to DNA and can activate or repress gene expression. C. Suppressor = 3. A DNA sequence that can bind to transcription factors to increase the rate of transcription. D. Trans-acting factor = 4. A DNA sequence that can inhibit gene expression. E. Cis-acting element = 5. A DNA sequence located on the same chromosome as the gene that it regulates. F. Trans-acting factor = 6. A protein that interacts with a cis-acting element to regulate gene expression.</p> Signup and view all the answers

    What is the function of the proteasome in a cell?

    <p>The proteasome breaks down proteins that are no longer needed by the cell.</p> Signup and view all the answers

    What is the process of converting an inactive precursor protein into an active form called?

    <p>Zymogen activation</p> Signup and view all the answers

    Eukaryotic gene regulation can be influenced by developmental stage.

    <p>True (A)</p> Signup and view all the answers

    The regulation of gene expression is identical in all cells of a multicellular organism.

    <p>False (B)</p> Signup and view all the answers

    What is the primary function of the TATA box in a eukaryotic gene?

    <p>The TATA box is a binding site for the TATA-binding protein, which helps position RNA polymerase at the start of transcription.</p> Signup and view all the answers

    Flashcards

    Eukaryotic Genome Organization

    Eukaryotic DNA is organized into multiple linear chromosomes within the nucleus and mitochondria (and chloroplasts in plants). It is highly compact to fit within the cell.

    Eukaryotic Gene Regulation

    The complex process of controlling when and how genes are expressed in a eukaryotic cell, from DNA all the way to the final protein product.

    Transcriptional Regulation (Long Term)

    Long-term changes in gene expression involving DNA compaction, methylation, and major rearrangements (e.g., transpositions).

    Transcriptional Regulation (Short Term)

    Short-term changes in gene expression influenced by transcription factors and cis-acting elements.

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    Post-Transcriptional Regulation

    Changes in gene expression occurring after transcription, involving mRNA processing (e.g., alternative splicing) and mRNA stability.

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    Translational Regulation

    Controlling the production of proteins from mRNA. Influenced by hormones, availability of cofactors, and timing.

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    Post-Translational Regulation

    Changes to proteins after they are made, including degradation, phosphorylation, and activation.

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    Cis-acting Elements

    DNA sequences that regulate gene expression, located near the gene they control.

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    Trans-acting Factors

    Proteins that bind to regulatory DNA sequences (cis factors) and influence gene expression.

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    Tissue-Specific Gene Expression

    Different cells in the body express different sets of genes, leading to distinct functions.

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    Developmental Regulation

    Gene expression changes over an organism's life cycle, directing cell differentiation and overall development.

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    Coordinated Gene Expression

    Multiple genes working together to achieve a common function.

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    DNA Rearrangement

    Process of changing DNA sequence through events such as translocations, deletions and insertions, playing a role in evolution and immune system function.

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    Transposons (Transposable Elements)

    Segments of DNA that can move to different locations within the genome.

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    Alternative Splicing

    A single gene can produce multiple protein isoforms by different ways to splice RNA.

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    mRNA Stability

    Varying lifespans of mRNA molecules determine how much protein is produced from a given gene.

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    Hormonal Control

    Specific hormones activate or deactivate specific gene expression patterns.

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    Protein Degradation

    Breakdown of proteins by the cell to control protein levels.

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    Zymogen Activation

    Inactive enzyme precursors (zymogens) activated into active forms after undergoing changes.

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    Promoter

    DNA region where RNA polymerase binds to initiate transcription.

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    Enhancer

    DNA sequences that increase the rate of transcription initiation.

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    Suppressor

    DNA sequences decreasing the rate of transcription initiation.

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    TATA Box

    A specific DNA sequence often found in eukaryotic promoters that helps positioning RNA polymerase.

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    What did Mendel study?

    Gregor Mendel, considered the father of genetics, conducted experiments with pea plants (Pisum sativum) to understand how traits are passed down from one generation to the next.

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    What is an allele?

    An allele represents a specific version or form of a gene. For example, the gene for flower color may have an allele for purple flowers and another allele for white flowers.

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    What is the difference between a character and a trait?

    A character is a general feature or attribute, like flower color. A trait is a specific variation of that character, like purple flowers.

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    What does homozygous mean?

    Homozygous means having the same allele on both chromosomes for a particular gene. For example, an individual with two alleles for purple flowers would be homozygous for that trait.

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    What is a phenotype?

    Phenotype refers to the observable physical characteristics or trait of an organism, which is determined by its genotype.

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    What is a genotype?

    It is the genetic makeup of an organism, representing the combination of alleles an individual has for specific genes.

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    What is the Law of Segregation?

    This law states that allele pairs separate during gamete (sperm or egg cell) formation, so each gamete receives only one allele from each pair. This ensures that offspring inherit one allele from each parent.

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    What is the Law of Independent Assortment?

    This law states that the inheritance of one trait is independent of the inheritance of another trait, as long as the genes are on different chromosomes.

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    What does dominant mean?

    A dominant allele will express its trait even if only one copy is present. It masks the effect of the recessive allele.

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    What does recessive mean?

    A recessive allele will only express its trait if two copies of it are present. It is masked by the dominant allele.

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    What is a test cross?

    A test cross is done to determine an unknown genotype. It involves crossing an individual with an unknown genotype with a homozygous recessive individual.

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    What is codominance?

    Codominance occurs when both alleles for a trait are expressed equally in the heterozygous condition, without one dominating the other.

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    What is incomplete dominance?

    Incomplete dominance occurs when the heterozygous phenotype is a blend or intermediate between the two homozygous phenotypes.

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    What is epistasis?

    Epistasis is a gene interaction where the expression of one gene affects the expression of another gene at a different locus.

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    What is polygenic inheritance?

    Polygenic inheritance occurs when a trait is controlled by multiple genes, leading to a wide range of phenotypes.

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    What is pleiotropy?

    Pleiotropy occurs when a single gene can have multiple effects on different traits.

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    How does the environment affect phenotype?

    Environmental factors can influence gene expression and thus affect the phenotype. Example: Nutrition, stress, temperature, etc.

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    What is epigenetics?

    Epigenetics is the study of heritable changes in gene expression that occur without alterations in the DNA sequence.

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    What is DNA methylation?

    DNA methylation is a process where methyl groups are added to DNA, often inhibiting gene expression. These changes can be inherited.

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    What is histone acetylation?

    Histone acetylation is a process where acetyl groups are added to histone proteins, which makes DNA more accessible for transcription and increases gene expression.

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    What are non-coding RNAs?

    Non-coding RNAs are RNA molecules that do not code for proteins but can regulate gene expression. Examples include microRNAs.

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    How can the microbiome affect gene expression?

    The gut microbiome can influence gene expression, potentially impacting health and traits like weight.

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    What is genomic imprinting?

    Genomic imprinting refers to the phenomenon where the expression of a gene depends on whether it was inherited from the mother or father. This is a type of epigenetic modification that influences gene expression.

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    What are telomeres?

    Telomeres are protective caps at the ends of chromosomes. They shorten with each cell division, playing a role in aging.

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    What is a blood type?

    Blood type is a genetic trait that involves antigens on the surface of red blood cells. The ABO blood group system is an example, with alleles IA, IB, and i.

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    What is a universal blood donor?

    A universal blood donor has blood type O, meaning they have neither A nor B antigens. Their blood can be safely transfused to most individuals without causing an immune reaction.

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    What is a universal blood acceptor?

    A universal blood acceptor has blood type AB, meaning they have both A and B antigens. They can receive blood from anyone, but can only donate to other AB individuals.

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    Study Notes

    Eukaryotic Organisms

    • Almost all are multicellular
    • Multiple types of tissues
    • Long life spans
    • Large genome size (e.g., 3 billion base pairs)
    • DNA in nucleus and mitochondria (in all eukaryotes)
    • Plants have chloroplast DNA
    • Nuclear DNA in multiple linear chromosomes, compact
    • Genetic variations due to sexual reproduction and genomic rearrangements

    Eukaryotic Needs and Genome Organization

    • DNA double helix (2 nm)
    • Nucleosomes (10 nm)
    • 30-nm chromatin fiber
    • Looped domains (300 nm)
    • Metaphase chromosome (700 nm per chromatid, 1400 nm per chromosome)

    Composition of Human Genome

    • Protein coding genes: 2%
    • Introns: 26%
    • Miscellaneous unique sequences: 12%
    • LINES: 20%
    • SINES: 20%
    • LTR retrotransposons: 8%
    • DNA transposons 3%
    • Simple sequence repeats: 3%
    • Segmental duplications: 5%
    • Heterochromatin: 8%

    Regulation of Eukaryotic Gene Expression

    • Transcriptional Regulation:
      • Long-term: DNA compaction and methylation
      • Short-term: Transcription factors (short term)
    • Post-Transcriptional Regulation:
      • Alternative splicing and mRNA stability
    • Translational Regulation:
      • Hormonal control, timing, cofactors (ex. Timing of fertilization)
    • Post-Translational Regulation:
      • Phosphorylation
      • Zymogen activation
      • Protein degradation
    • Developmental regulation: (e.g., seed → tree)
    • Coordinated regulation: (e.g., glycolysis)
    • Tissue-specific gene expression: Different tissues express specific genes.

    DNA Methylation

    • Most common method of genomic imprinting
    • Parental germline establishes imprinting methylation
    • Methylation remains in the zygote

    Transcriptional - Long Term & Developmental Regulation

    • Human a-globin and b-globin gene evolution
    • DNA rearrangements in antibody (B-cell) maturation

    Transcriptional – Long Term Regulation

    • Transposable elements (TEs) in DNA rearrangement
    • Mechanism of TE movement: TE moves to another location, and replication fills in gaps
    • First discovered in corn by Barbara McClintock (1902-1992), awarded Nobel Prize in 1983
    • Jumping genes: 11% of our genome is made up of jumping genes

    Mechanism of Transposition

    • Movement of TEs from one location in DNA to another location
    • Transposons/Transposable Elements

    Transcriptional – Short Term Regulation

    • A eukaryotic gene and its transcript

    Post-Transcriptional Regulation

    • Alternative splicing and mRNA stability

    Transcriptional – Short Term Regulation

    • Three major DNA-binding domains in transcription factors (e.g., zinc finger, helix-turn-helix, leucine zipper)
    • Model for enhancer action

    Hormonal Control

    • Prolactin and lactation after childbirth
    • Availability of heme (iron complex)

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    Description

    Explore the fascinating world of eukaryotic organisms, focusing on their complex genome organization and gene expression regulation. This quiz covers essential aspects of their cellular structure, genetic makeup, and the intricacies of gene regulation processes.

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