Eukaryotic Genes and mRNA Processing
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Questions and Answers

Which of the following best describes the role of introns in eukaryotic genes?

  • Sequences responsible for adding a poly-A tail
  • Expressed sequences that code for proteins
  • Sequences that initiate DNA replication
  • Noncoding sequences that interrupt expressed sequences (correct)

RNA splicing involves the addition of introns into the mRNA sequence.

False (B)

What is the name of expressed sequences present in eukaryotic genes?

exons

The complex structure responsible for splicing introns from pre-mRNA is called the ________.

<p>spliceosome</p> Signup and view all the answers

Match the following mRNA modifications with their descriptions:

<p>5' capping = Addition of a modified guanine nucleotide to the 5' end of pre-mRNA Intron splicing = Removal of non-coding sequences from pre-mRNA Addition of a poly-A tail = Addition of a string of adenine nucleotides to the 3' end of pre-mRNA</p> Signup and view all the answers

George Beadle and Edward Tatum's experiment with Neurospora crassa led to which fundamental concept in molecular genetics?

<p>The one gene-one enzyme concept (C)</p> Signup and view all the answers

If a cell were unable to perform 5' capping during mRNA processing, which of the following consequences would be most likely?

<p>Reduced mRNA stability and translation efficiency (D)</p> Signup and view all the answers

In eukaryotes, transcription and translation occur simultaneously within the cytoplasm.

<p>False (B)</p> Signup and view all the answers

Insanely difficult: Considering the role of snRNAs in the spliceosome, propose a specific experimental technique that could be used to identify the precise binding sites of a particular snRNA on a pre-mRNA molecule during splicing. What would be a significant challenge in performing this experiment and how might it be addressed?

<p>One possible technique is <strong>crosslinking immunoprecipitation followed by sequencing (CLIP-seq)</strong>. This involves UV crosslinking a specific snRNA to the pre-mRNA it interacts with, immunoprecipitating the snRNA, and then sequencing the bound RNA fragments to identify the binding sites. A significant challenge is the transient and dynamic nature of snRNA-pre-mRNA interactions within the spliceosome. To address this, one could use fast and efficient crosslinking methods and optimize the immunoprecipitation protocol to capture these transient complexes effectively.</p> Signup and view all the answers

In the polypeptide puzzle worksheet, what information is contained in Section A?

<p>An mRNA sequence (C)</p> Signup and view all the answers

In the procedure described, gaps should be left while dividing the mRNA sequence into triplets.

<p>False (B)</p> Signup and view all the answers

What is the role of Section B in the polypeptide puzzle worksheet activity?

<p>Section B provides a guide to correctly match mRNA triplets to their corresponding amino acids.</p> Signup and view all the answers

In the activity, after identifying an amino acid, one should look for the corresponding ______ in Section C.

<p>word</p> Signup and view all the answers

Match the section of the polypeptide puzzle worksheet with its content:

<p>Section A = mRNA sequence Section B = Guide to mRNA triplet-amino acid matching Section C = Amino acids and corresponding words Section D = Word order guide for decoding</p> Signup and view all the answers

Suppose a mutation occurs where a single nucleotide in an mRNA triplet is changed, and this altered triplet codes for the same amino acid as the original triplet. What is the most likely outcome?

<p>The resulting amino acid sequence will remain unchanged due to the redundancy of the genetic code. (D)</p> Signup and view all the answers

What is the function of the start codon (AUG) in mRNA translation?

<p>To indicate the starting point for translation. (B)</p> Signup and view all the answers

Imagine a scenario where, due to a cellular error, a uracil base (U) is mistakenly inserted instead of a guanine base (G) at the beginning of the 10th codon in the provided mRNA sequence. Given the potential repercussions, what is the most likely immediate outcome at the protein level, assuming that the alteration doesn't introduce a premature stop codon?

<p>A single amino acid substitution at the 10th position and the rest of the protein sequence remains the same. (A)</p> Signup and view all the answers

In DNA replication, new nucleotide chains are synthesized in the 3' to 5' direction.

<p>False (B)</p> Signup and view all the answers

What enzyme is responsible for unwinding the DNA helix at the replication origin?

<p>DNA helicase</p> Signup and view all the answers

Synthesis on the lagging strand occurs in segments called _______ fragments.

<p>Okazaki</p> Signup and view all the answers

A scientist mutates a gene such that the DNA gyrase (topoisomerase II) enzyme no longer functions correctly in vivo. Which of these outcomes would you expect?

<p>The DNA helix will be unable to unwind, thus preventing replication. (A)</p> Signup and view all the answers

What is the updated version of the 'one gene' concept, considering that some proteins are made of multiple polypeptides?

<p>One gene-one polypeptide (C)</p> Signup and view all the answers

The genetic code uses a different set of instructions for each type of living cell during translation.

<p>False (B)</p> Signup and view all the answers

In mRNA, how many nucleotides comprise a codon?

<p>three</p> Signup and view all the answers

The start codon, ______, signals the initiation of translation.

<p>AUG</p> Signup and view all the answers

Which of the following is NOT a stop codon?

<p>UAC (A)</p> Signup and view all the answers

In an mRNA sequence, a single nucleotide can be part of multiple codons simultaneously.

<p>False (B)</p> Signup and view all the answers

What catalyzes the reaction that bonds tRNA to the A site during translation?

<p>Peptidyl transferase (C)</p> Signup and view all the answers

What does it mean for the genetic code to be 'degenerate'?

<p>An amino acid can be coded by more than one codon. (B)</p> Signup and view all the answers

The E site on the ribosome is the entry point for new tRNA molecules carrying amino acids.

<p>False (B)</p> Signup and view all the answers

In what direction is the genetic code read?

<p>5' --&gt; 3' direction (C)</p> Signup and view all the answers

What is the start codon that initiates translation?

<p>AUG</p> Signup and view all the answers

Besides mRNA, name two other essential molecules required for translation to proceed.

<p>tRNA and ribosomes</p> Signup and view all the answers

Translation is terminated when a stop codon is encountered at the ______ site of the ribosome.

<p>A</p> Signup and view all the answers

If a mutation occurred altering a tRNA molecule such that it still binds to its correct amino acid but now recognizes a different codon, what is the most likely outcome?

<p>The protein will have an amino acid substitution at a specific location, altering its function. (C)</p> Signup and view all the answers

Match the post-translational modification with its description:

<p>Phosphorylation = Addition of a phosphate group Methylation = Addition of a methyl group Glycosylation = Addition of a sugar group Lipidation = Attachment of a lipid group</p> Signup and view all the answers

What is the role of release factors in translation?

<p>Triggering the dissociation of the translation complex (B)</p> Signup and view all the answers

Post-translational modifications are essential for all polypeptide products to achieve their fully functional state.

<p>True (A)</p> Signup and view all the answers

The movement of the ribosome along the mRNA in the 3' direction, leading to the translocation of tRNA molecules, is known as ______.

<p>translocation</p> Signup and view all the answers

What would be the consequence of a DNA replication error that changes a UGA codon to UGG?

<p>The polypeptide chain would continue to elongate past where it should have stopped, potentially leading to a non-functional or misfolded protein.</p> Signup and view all the answers

Flashcards

mRNA sequence

A sequence of nucleotides that encodes genetic information for protein synthesis.

Triplet

A group of three nucleotides on the mRNA that corresponds to one amino acid.

Amino Acid

Building blocks of proteins; correspond to mRNA triplets.

Decoding the message

The process of translating mRNA sequences into a sequence of amino acids.

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Mutation effect

A change in a nucleotide that can alter the amino acid sequence.

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Comparison with a partner

An activity where students share and discuss their decoded messages.

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Guide questions

Questions intended to facilitate understanding and reflection on the activity.

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Start Codon

A specific mRNA sequence (AUG) where translation begins.

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Stop Codon

A nucleotide sequence (UAA, UAG, UGA) that ends translation.

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Replication Fork

The Y-shaped region where DNA is split for replication.

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Okazaki Fragments

Short segments of DNA synthesized on the lagging strand during replication.

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Leading Strand

The strand of DNA that is synthesized continuously in the same direction as the replication fork.

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Exons

Expressed sequences in eukaryotic genes, coding for proteins.

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Introns

Noncoding, intervening sequences in eukaryotic genes, interrupting exons.

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RNA splicing

Process of removing introns and joining exons in pre-mRNA.

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5’ capping

Addition of a methyl group to the 5' end of mRNA for stability.

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Poly-A tail

Addition of a string of adenine nucleotides to the 3' end of mRNA.

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Spliceosome

Complex of snRNAs and proteins that carries out RNA splicing.

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snRNAs

Small nuclear RNAs that play a key role in splicing introns.

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Translation

Process where mRNA is decoded to build a protein sequence.

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One Gene-One Enzyme

Concept stating each gene encodes for a specific enzyme or protein.

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One Gene-One Polypeptide Concept

Each polypeptide is encoded by a different gene.

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mRNA

Messenger RNA that carries genetic information for protein synthesis.

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Codons

Three-nucleotide sequences in mRNA that code for amino acids.

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Nonoverlapping Code

In mRNA, each nucleotide is part of only one codon.

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Comma-less Code

No punctuation between codons in reading mRNA.

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Degeneracy

An amino acid can be coded by more than one codon.

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Unambiguity

One codon codes for only one amino acid.

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Near Universal Code

The genetic code is similar across almost all organisms.

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Peptidyl Transferase

An enzyme at the ribosome that catalyzes peptide bond formation.

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Ribosome

A cellular structure that synthesizes proteins by translating mRNA.

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A Site

The site on the ribosome where new tRNA brings amino acids.

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P Site

The site on the ribosome where the tRNA holds the growing polypeptide chain.

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E Site

The exit site on the ribosome where empty tRNA leaves.

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Release Factors

Proteins that recognize stop codons and trigger translation termination.

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Post-Translational Modifications

Chemical changes to a polypeptide after synthesis for functional diversity.

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Phosphorylation

Addition of a phosphate group to a protein during post-translational modifications.

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Study Notes

DNA Replication and Protein Synthesis

  • DNA replication is a critical process for cell division, ensuring daughter cells receive complete genetic material.
  • Replication occurs during the S phase of the cell cycle.
  • DNA replication is semiconservative, meaning each new DNA molecule contains one original strand and one newly synthesized strand.
  • DNA replication proceeds in both directions from the origin of replication, forming replication forks.
  • DNA polymerase III is the primary enzyme responsible for DNA synthesis during elongation. Synthesis occurs in the 5' to 3' direction.
  • The leading strand is synthesized continuously, while the lagging strand is synthesized discontinuously in short fragments (Okazaki fragments).
  • DNA polymerase I removes RNA primers and replaces them with DNA nucleotides.
  • DNA ligase joins Okazaki fragments together.
  • Proofreading mechanisms exist to ensure high accuracy in DNA replication.
  • Mismatch repair corrects errors that escape proofreading.

Types of RNA

  • There are five types of RNA: mRNA, tRNA, rRNA, snRNA, and snoRNA.
  • mRNA carries the genetic code for protein synthesis from DNA to the ribosomes.
  • tRNA carries amino acids to the ribosome, matching them to the mRNA codons.
  • rRNA forms the structural and functional component of ribosomes.
  • snRNA and snoRNA are involved in mRNA processing, including splicing.

Transcription

  • Transcription is the process of synthesizing RNA from a DNA template (a gene).
  • The enzyme RNA polymerase synthesizes the RNA molecule in the 5’ to 3’ direction.
  • RNA polymerase binds a specific sequence in the DNA called a promoter.
  • The promoter sequence signals the start of a gene.
  • During transcription, the non-template DNA strand is copied, creating an mRNA molecule.

Translation

  • Translation is the synthesis of proteins from an mRNA template.
  • Ribosomes are the organelles responsible for translation.
  • Amino acids corresponding to each codon are added to the growing polypeptide chain, based on the mRNA sequence.
  • The ribosome moves along the mRNA, reading codons and adding amino acids to the growing polypeptide chain.
  • Translation ends when a stop codon is encountered.

Post-translational Modifications

  • Polypeptides undergo various modifications (e.g., methylation, glycosylation, phosphorylation) after being synthesized.
  • These modifications can alter the structure and function of the protein.

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Description

Explore the role of introns in eukaryotic genes and the process of mRNA splicing. Test your knowledge on mRNA modifications, the function of snRNAs, and the consequences of impaired mRNA processing. Learn about gene expression.

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