Epigenetics Overview and Processes

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Questions and Answers

People exposed to famine before birth showed changes in methylation levels compared to their siblings who were not exposed.

True (A)

Older identical twins with different lifestyles exhibit more similar DNA methylation patterns than younger twins.

False (B)

The genome is the complete set of DNA that is consistent across all individuals.

False (B)

The degree of epigenetic change is linked with changes in genetic function.

<p>True (A)</p> Signup and view all the answers

Hypomethylation is commonly associated with decreased transcriptional activity.

<p>False (B)</p> Signup and view all the answers

Epigenetic changes can weaken the immune system during infections.

<p>True (A)</p> Signup and view all the answers

The IL-12B gene is turned 'on' during Mycobacterium tuberculosis infections.

<p>False (B)</p> Signup and view all the answers

Increased DNA methylation levels are typically found in normal cells compared to cancer cells.

<p>False (B)</p> Signup and view all the answers

BRCA1 gene mutations are associated with a reduced risk of breast cancer.

<p>False (B)</p> Signup and view all the answers

Colorectal cancer screening tests may use stool samples to check for abnormal DNA methylation.

<p>True (A)</p> Signup and view all the answers

Epigenetics can alone diagnose cancer.

<p>False (B)</p> Signup and view all the answers

Epigenetic changes always involve alterations to the DNA sequence.

<p>False (B)</p> Signup and view all the answers

DNA methylation typically activates genes by adding a methyl group.

<p>False (B)</p> Signup and view all the answers

A pregnant woman's nutrition has no impact on her baby's epigenetics.

<p>False (B)</p> Signup and view all the answers

X-chromosome inactivation is a mechanism to equalize gene expression levels between male and female mammals.

<p>True (A)</p> Signup and view all the answers

Children born during the Dutch winter famine were more prone to certain diseases later in life.

<p>True (A)</p> Signup and view all the answers

Chemical changes such as acetylation can influence gene expression.

<p>True (A)</p> Signup and view all the answers

Non-coding RNA is involved in preventing the breakdown of coding RNA.

<p>False (B)</p> Signup and view all the answers

Epigenetic mechanisms have been linked to various illnesses, including cancer and autoimmune diseases.

<p>True (A)</p> Signup and view all the answers

Demethylation turns genes 'off' by removing methyl groups from DNA.

<p>False (B)</p> Signup and view all the answers

Heavy metals and pesticides are known to be potential drivers behind epigenetic processes.

<p>True (A)</p> Signup and view all the answers

Methylation occurs on the active Xist gene while the Xist locus on the inactive X chromosome remains unmethylated.

<p>False (B)</p> Signup and view all the answers

Histones that are tightly packed lead to genes being turned 'on'.

<p>False (B)</p> Signup and view all the answers

Non-coding RNA can help modulate gene expression by breaking down coding RNA.

<p>True (A)</p> Signup and view all the answers

Epigenetic changes are identical at all stages of life.

<p>False (B)</p> Signup and view all the answers

DNA methylation levels decrease with age, with newborns showing the highest levels.

<p>True (A)</p> Signup and view all the answers

Smoking has no impact on DNA methylation levels in specific genes.

<p>False (B)</p> Signup and view all the answers

Some epigenetic changes can be reversed depending on behavior or environmental changes.

<p>True (A)</p> Signup and view all the answers

The state of the epigenome at birth is indicative of how it will remain throughout an individual's life.

<p>False (B)</p> Signup and view all the answers

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Flashcards

Genome

The complete set of DNA instructions unique to an individual.

Epigenome

A layer of chemical compounds that sit on top of the genome and tell it what to do.

Epigenetic Modification

Changes in how genes are expressed without altering the underlying DNA sequence. It involves chemical modifications like methylation and acetylation.

DNA Methylation

The process of adding a methyl group to DNA, often leading to decreased gene expression.

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Epigenetics and Disease Risk

Differences in DNA methylation patterns between individuals can contribute to varying disease risk.

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What is epigenetics?

The study of how environmental factors and behavior can influence gene expression without altering the DNA sequence.

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How do epigenetic changes differ from genetic changes?

Epigenetic changes can be reversed, unlike genetic changes. They don't change the DNA sequence but can alter how the body reads it.

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How do epigenetic changes affect gene expression?

Epigenetic changes can turn genes "on" or "off." This is how epigenetic processes impact our health.

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What is DNA methylation?

Addition of a methyl group (CH3) to DNA, primarily at cytosine bases, typically turning genes "off."

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What is demethylation?

Process of removing the methyl group from DNA, usually "turning genes on."

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What is X-chromosome inactivation (XCI)?

A process in female mammals where one X chromosome is inactivated to balance gene expression between sexes. The Xist gene seems to play a role in selecting which chromosome is inactivated.

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What are some types of epigenetic processes?

Chemical modifications, chromatin modifications, and non-coding RNA are all epigenetic mechanisms that influence gene expression.

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What are some known or suspected drivers of epigenetic processes?

Factors like heavy metals, pesticides, and viruses can cause epigenetic changes. These can impact gene expression.

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How can infections affect epigenetics?

Infections can change the methylation patterns of DNA and histone proteins, impacting immune system function. This can weaken the immune response, allowing the infection to persist.

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How can epigenetics influence cancer risk?

Changes in epigenetic markers, like increased DNA methylation, can increase the risk of developing cancer. These changes can affect gene expression related to cell growth and division.

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How can epigenetics aid in cancer diagnosis?

Epigenetic changes can be used to identify different subtypes of cancer. Abnormal methylation patterns in specific regions of the genome can help diagnose certain cancers.

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How does a pregnant woman's environment affect her child's epigenetics?

A pregnant woman's diet and lifestyle can affect the epigenetic programming of the fetus. These changes can influence the child's health later in life.

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What did the Dutch Winter Famine reveal about epigenetics?

The Dutch Winter Famine (1944-1945) showed that prenatal exposure to famine can lead to epigenetic changes that increase the risk of developing chronic diseases later in life.

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Can epigenetic changes be reversed?

Some epigenetic changes can be reversed by lifestyle interventions, such as dietary changes and exercise.

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What is the potential of epigenetics research?

Epigenetics is a relatively new field but offers a promising avenue for understanding and potentially preventing diseases. Researchers are exploring epigenetic therapies for cancer and other conditions.

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Methylation in X-chromosome inactivation

The process of modifying DNA by adding methyl groups, influencing gene expression. It plays a crucial role in X-chromosome inactivation, where the inactive chromosome becomes methylated, while the remaining active X chromosome remains unmethylated.

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Histone Modification

Histones are proteins that DNA wraps around. When histones are tightly packed, genes are 'off'. Loosely packed histones allow more DNA exposure, turning genes 'on'. Chemical modifications can alter histone packing.

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Non-coding RNA's Role in Gene Regulation

Non-coding RNAs regulate gene expression by interacting with coding RNAs, leading to their breakdown and preventing protein production. They can also recruit proteins to modify histones, turning genes 'on' or 'off'.

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Epigenetics

Epigenetics encompasses modifications to DNA and its associated proteins that influence gene expression without altering the underlying DNA sequence. These modifications can be influenced by factors like environment and lifestyle.

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Epigenetics and Development

Epigenetic changes happen throughout life, starting even before birth. These changes are essential in determining the fate of cells during differentiation, as different cells specialize for specific functions.

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Epigenetics and Age

Epigenetic changes, including DNA methylation patterns, can vary with age. For example, DNA methylation levels are generally higher in newborns, gradually decreasing throughout life. This suggests that epigenetic modifications are dynamic and constantly adapting.

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Reversibility of Epigenetic Changes

Not all epigenetic modifications are permanent; some can be altered in response to changes in behavior or environment. This suggests that epigenetic changes can be reversible, offering potential avenues for therapeutic interventions.

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Smoking and Epigenetics

Smoking can induce epigenetic changes, particularly at certain parts of the AHRR gene. Smokers tend to have less DNA methylation at this gene compared to non-smokers. However, quitting smoking can lead to an increase in DNA methylation levels at this gene over time, potentially reaching levels similar to non-smokers.

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Study Notes

Epigenetics Overview

  • Epigenetics is the study of how behavior and environment can cause changes that affect the way genes work.
  • Unlike genetic changes, epigenetic changes are reversible and do not alter the DNA sequence.
  • Epigenetic changes affect gene expression by controlling how the body reads the DNA sequence; turning genes "on" or "off."

Types of Epigenetic Processes

  • Chemical changes: methylation, acetylation, phosphorylation, ubiquitylation, and sumolyation.
  • Chromatin modification: substances like acetyl groups modify chromatin structure to influence gene expression.
  • Non-coding RNA: assists in gene expression control by binding to coding RNA and certain proteins to break down the RNA and prevent protein production, or by recruiting proteins to modify histones, thus controlling gene expression.

DNA Methylation

  • DNA methylation adds a methyl group (CH3) to DNA, primarily on cytosine bases in a consecutive manner.
  • Demethylation removes the methyl group.
  • Methylation typically turns genes "off," while demethylation turns them "on."

Role of DNA Methylation in Early Development

  • X-chromosome inactivation (XCI) is a form of dosage compensation in mammalian females that balances X-linked gene expression in both sexes.
  • XCI results in one X chromosome being inactivated in each cell.

Xist Gene's Role in X-chromosome inactivation

  • The Xist gene is involved in selecting which X chromosome becomes inactive.
  • After Xist initiates inactivation, silencing of the chosen X chromosome is maintained through methylation. The Xist gene locus becomes methylated on the active X chromosome, while remaining unmethylated on the inactive X chromosome

Histone Modification

  • DNA wraps around proteins called histones.
  • Tightly packed histones silence genes, while loosely packed histones expose DNA and support gene activation.
  • Chemical groups can be added or removed from histones, influencing the packing and thus, gene expression.

Non-coding RNAs

  • Non-coding RNAs (ncRNAs) bind to coding RNA, along with other proteins, to break down the coding RNA, preventing use for protein production.
  • Non-coding RNAs can also recruit modifying proteins to interact with histones, influencing gene expression.

Epigenetics and Development

  • Epigenetic changes begin before birth, and all cells, regardless of function, have the same genome.
  • Epigenetics determines how cells differentiate and become specialized.

Epigenetics and Age

  • Epigenetic changes occur throughout life.
  • Epigenetic profiles differ significantly at birth, childhood, and adulthood.
  • Prenatal and early-life environments (nutrition, toxins, etc.) significantly impact epigenetic modifications.

Epigenetics and Diseases

  • Infections can change epigenetics to weaken the immune system, benefiting the infection.
  • Epigenetics can modify existing patterns in cancers.
  • Increased DNA methylation at certain genes can increase the risk of cancer.
  • Epigenetic patterns vary significantly between different cancer types; this could eventually help with earlier detection and determining cancer type.

Epigenetics and Smoking

  • Smoking modifies epigenetic changes in certain genes, including the AHRR gene, which tend to show less DNA methylation in smokers compared to non-smokers.
  • Patterns in smokers are more drastic with increasing smoking intensity and duration.
  • Epigenetic modifications are potentially reversible after quitting smoking.

Epigenetics and Colorectal Cancer

  • Abnormal DNA methylation at certain gene regions can indicate colorectal cancer.
  • Some tests for colorectal cancer identify abnormal methylation levels using stool samples.

Nutrition During Pregnancy

  • A pregnant woman's environment and behavior (diet, stress, etc.) influence the developing baby's epigenetic profile.
  • Some epigenetic modifications persist, increasing the child's likelihood of specific diseases later in life.

Epigenetics and Twin Studies

  • Twin studies reveal epigenetic similarities and differences based on shared lifestyles and aging.
  • Identical twins generally demonstrate similar epigenetic patterns, especially early in life.
  • Differences in lifestyle have a greater impact on epigenetic profiles later in life.

Genome vs. Epigenome

  • The genome is the DNA sequence, defining the organism's inherent blueprint.
  • The epigenome consists of chemical compounds that control how the genome functions.

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