Enzymes: Catalysts in Biochemistry

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Questions and Answers

What is an apoenzyme?

  • An enzyme without its cofactor (correct)
  • An enzyme that catalyzes reactions at high pH only
  • An enzyme that has undergone a structural change
  • An enzyme in its active form with a cofactor

How do enzyme cofactors affect enzymatic activity?

  • They increase the pH of the reaction environment
  • They convert the enzyme into a different protein type
  • They decrease the activation energy of the reaction (correct)
  • They act as substrates in the reaction

What is the primary characteristic of the active site of an enzyme?

  • It is complementary in shape to the substrate upon binding (correct)
  • It is where the substrate and product are released
  • It has a fixed shape that does not change during enzyme function
  • It prevents enzyme-substrate complexes from forming

Which of the following statements about proteolytic enzymes is correct?

<p>They break peptide bonds among amino acids (C)</p> Signup and view all the answers

What is a characteristic feature of the induced-fit model of enzyme function?

<p>The substrate binds and then the enzyme adapts its shape (C)</p> Signup and view all the answers

What does a negative Gibbs Free Energy change (ΔG < 0) indicate about a reaction?

<p>The reaction will produce more product until equilibrium is reached. (B)</p> Signup and view all the answers

How does the presence of an enzyme affect a chemical reaction?

<p>It lowers the activation energy required to reach the transition state. (C)</p> Signup and view all the answers

In Michaelis-Menten kinetics, what does Km represent?

<p>The substrate concentration at which the reaction rate is half of Vmax. (B)</p> Signup and view all the answers

Which statement correctly describes the relationship between reaction rate and reactant concentration in first-order reactions?

<p>The reaction rate is directly proportional to the reactant concentration. (A)</p> Signup and view all the answers

What does kcat represent in enzyme kinetics?

<p>The maximum rate of product formation when the enzyme is fully saturated. (A)</p> Signup and view all the answers

What is the main purpose of the Lineweaver-Burk plot?

<p>To simplify the determination of kinetic parameters. (A)</p> Signup and view all the answers

In a Lineweaver-Burk plot, how is $K_M$ determined?

<p>As the negative reciprocal of the x-intercept. (C)</p> Signup and view all the answers

What type of plot is created by plotting $V$ against $V/[S]$?

<p>Eadie-Hofstee diagram. (A)</p> Signup and view all the answers

What characteristic is common to allosteric enzymes?

<p>They have multiple active sites located on different subunits. (A)</p> Signup and view all the answers

What happens when an allosteric inhibitor binds to an enzyme?

<p>All active sites become less effective. (D)</p> Signup and view all the answers

What type of regulation involves a regulator molecule binding to an enzyme at a site other than the active site?

<p>Allosteric regulation. (A)</p> Signup and view all the answers

In cooperativity, how does a substrate affect other active sites on an allosteric enzyme?

<p>It enhances their activity once one active site is occupied. (A)</p> Signup and view all the answers

The slope of an Eadie-Hofstee plot represents what kinetic parameter?

<p>The negative value of $K_M$. (A)</p> Signup and view all the answers

Which of the following statements about competitive and noncompetitive inhibition is correct?

<p>Only competitive inhibition can be reversed by increasing substrate concentration. (C)</p> Signup and view all the answers

Chymotrypsin is an example of which type of enzymatic behavior?

<p>Enzyme that obeys Michaelis–Menten kinetics. (B)</p> Signup and view all the answers

Flashcards

Enzyme

A biological catalyst that speeds up biochemical reactions.

Substrate

The reactant in an enzyme-catalyzed reaction.

Enzyme Specificity

Enzymes are typically highly specific, reacting only with their particular substrate.

Cofactor

Non-protein molecules or ions that help an enzyme function.

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Coenzyme

Organic cofactor that helps in catalysis.

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Holoenzyme

An enzyme with all its necessary cofactors bound to it.

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Apoenzyme

Enzymes without their cofactors.

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Catalytic Site

The part of the enzyme where the chemical reaction occurs.

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Binding Site/Active Site

Where the substrate binds to the enzyme.

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Transition State

The highest-energy species in a reaction pathway.

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Gibbs Free Energy (ΔG)

A thermodynamic function that predicts if a reaction will proceed spontaneously. A negative ΔG means the reaction will proceed to the right, while a positive ΔG means it will proceed to the left.

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ΔG < 0

Indicates a spontaneous reaction; the reaction will proceed to the right.

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ΔG > 0

Indicates a nonspontaneous reaction; the reaction will proceed to the left.

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First-order reaction

A reaction where the rate is directly proportional to the concentration of one reactant.

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Michaelis-Menten constant (Km)

The substrate concentration at which the reaction rate is half of its maximum value.

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Vmax

The maximum rate of an enzyme-catalyzed reaction, achieved when the enzyme is saturated with substrate.

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kcat

Turnover number, the number of substrate molecules converted to product per enzyme molecule per unit time when the enzyme is saturated.

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Enzyme

Biological catalysts that speed up chemical reactions in living organisms.

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Activation Energy

The minimum energy required to initiate a chemical reaction.

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Equilibrium

State in which the rates of the forward and reverse reactions are equal, resulting in no net change in the concentrations of reactants and products.

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Michaelis-Menten Kinetics

A model describing how enzyme activity depends on substrate concentration, characterized by a maximum velocity (Vmax) and a Michaelis constant (Km).

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Lineweaver-Burk plot

A double-reciprocal plot of enzyme kinetics, where 1/V is plotted against 1/[S].

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Km

Michaelis constant; the substrate concentration at which the reaction velocity is half of the maximum velocity (Vmax).

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Vmax

Maximum velocity; the theoretical upper limit of enzyme activity.

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Allosteric regulation

Regulation of enzyme activity by binding of a molecule (activator or inhibitor) to a site other than the active site

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Allosteric site

The site on an enzyme where a regulator molecule binds to control enzyme activity.

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Allosteric enzyme

Enzymes with multiple active sites located on different protein subunits. The activity of one active site can be affected by the binding of a molecule to another active site or allosteric site.

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Competitive inhibition

A form of inhibition where the inhibitor competes with the substrate for the active site of an enzyme.

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Noncompetitive inhibition

A form of inhibition where the inhibitor binds to a site on the enzyme other than the active site, changing the enzyme's shape and reducing its activity.

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Cooperativity

A form of allosteric regulation where binding of a substrate enhances the binding of additional substrates to other enzyme subunits.

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Eadie-Hofstee diagram

A linear plot of enzyme kinetics, where velocity (V) is plotted against velocity divided by substrate concentration (V/[S]).

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Study Notes

Enzymes: Remarkable Catalysts

  • Enzymes speed up biochemical reactions.
  • Most enzymes are proteins, some are RNA.
  • Enzymes stabilize the transition state, the high-energy point in a reaction.
  • Enzymes function optimally at specific temperatures and pH levels.

Enzymes Catalyze Highly Specific Reactions

  • Reactants in enzyme-catalyzed reactions are called substrates.
  • Enzymes are highly specific, like proteolytic enzymes that hydrolyze peptide bonds between amino acids.

Proteases Readily Break Peptide Bonds

  • Proteases are enzymes that catalyze the breaking of peptide bonds.

Many Enzymes Require Cofactors for Activity

  • Enzyme cofactors are non-protein molecules or ions that assist enzymes.

Active Sites of Enzymes

  • Enzymes have catalytic and binding sites.
  • The catalytic site facilitates the conversion of substrates to products.
  • The binding site, or active site, is highly specific allowing enzymes to interact selectively with substrates.
  • The lock-and-key model suggests a rigid active site that is complementary to the substrate.
  • The induced-fit model proposes a flexible active site that changes shape to fit the substrate.

Thermodynamics and Enzymes

  • Gibbs Free Energy (G) is a useful thermodynamic function for understanding enzymes.
  • The change in Gibbs free energy (ΔG) determines the direction of a reaction (ΔG < 0, proceeds to the right; ΔG > 0, proceeds to the left).
  • Enzymes do not change the equilibrium of a reaction, but they accelerate the rate of reaction.
  • Reactions with a negative ΔG will release energy.

Michaelis-Menten Kinetics

  • Km is the Michaelis-Menten constant, a measure of the enzyme's affinity for the substrate.
  • Vmax is the maximal reaction rate.
  • kcat is the turnover number, a measure of the enzyme's catalytic efficiency.
  • Enzyme kinetics are typically mathematical.

Allosteric Regulation

  • Allosteric regulation involves a regulatory molecule binding to the enzyme at a site other than the active site.
  • This alters the enzyme's activity.
  • Competitive inhibition occurs when a molecule similar to the substrate competes for the active site.
  • Noncompetitive inhibition occurs when the inhibitor binds to a separate site, reducing enzyme function.

Examples of Enzymes that do not obey Michaelis-Menten Kinetics

  • Some enzymes, like allosteric enzymes, do not follow Michaelis-Menten kinetics because of their cooperative substrate binding.

Proteases

  • Proteases use a catalytic triad to break peptide bonds.
  • Proteases show intricate mechanisms.

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