Enzymes and Their Activity Units

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Questions and Answers

What is the primary role of Coenzyme A (CoASH)?

  • Carrying the acyl group of fatty acids (correct)
  • Functioning as a coenzyme for vitamin C
  • Serving as a reducing agent in oxidative phosphorylation
  • Acting as a hydrogen donor in insulin regulation

Which vitamin acts as a coenzyme for the enzymes dopamine oxidase and polyphenol oxidase?

  • Vitamin B2 (Riboflavin)
  • Vitamin B1 (Thiamin)
  • Vitamin C (L-ascorbic acid) (correct)
  • Vitamin B3 (Niacin)

Which compound is described as a hydrogen carrier in oxidative decarboxylation?

  • Biotin
  • Pyridoxal phosphate
  • Coenzyme Q (Ubiquinone)
  • Lipoic acid (correct)

What function does Pyridoxal phosphate primarily serve?

<p>Coenzyme for transamination and decarboxylation (A)</p> Signup and view all the answers

Which amino acid is part of the tripeptide known as Glutathion?

<p>Cysteine (A)</p> Signup and view all the answers

What is the primary role of enzymes in biological systems?

<p>To increase the rate of chemical reactions (A)</p> Signup and view all the answers

Which of the following describes a holoenzyme?

<p>An enzyme made up of both a protein part and a non-protein part (C)</p> Signup and view all the answers

What is a common characteristic of ribozymes?

<p>They can catalyze the cleavage of nucleic acids (B)</p> Signup and view all the answers

How is enzyme activity expressed in terms of International Units (IU)?

<p>Amount of enzyme that converts one micromole of substrate per minute (B)</p> Signup and view all the answers

What distinguishes a coenzyme from a prosthetic group?

<p>Prosthetic groups are usually derivatives of vitamins (C)</p> Signup and view all the answers

Where are intracellular enzymes primarily produced?

<p>In the cytosol or endoplasmic reticulum (B)</p> Signup and view all the answers

Which of the following best describes coenzymes?

<p>They can accept or donate groups during reactions (D)</p> Signup and view all the answers

Which of the following enzymes is classified as an extracellular enzyme?

<p>Pepsin (A)</p> Signup and view all the answers

Which enzyme acts specifically on α (1,4) glycosidic bonds?

<p>Amylase (D)</p> Signup and view all the answers

What term describes enzymes that are produced in an inactive form?

<p>Zymogens (D)</p> Signup and view all the answers

Which of the following methods can activate zymogens?

<p>By HCl (A)</p> Signup and view all the answers

The enzyme L-amino acid oxidase is specific for which type of substrate?

<p>L-amino acids (B)</p> Signup and view all the answers

What type of enzymes catalyze the transfer of phosphate groups?

<p>Kinases (A)</p> Signup and view all the answers

Which enzyme catalyzes both oxidation and decarboxylation reactions of citrate?

<p>Isocitrate dehydrogenase (B)</p> Signup and view all the answers

What is the primary role of oxidases in biochemical reactions?

<p>Removing hydrogen from a substrate (D)</p> Signup and view all the answers

Which enzyme class is responsible for hydrolyzing glycosidic bonds?

<p>Carbohydrases (C)</p> Signup and view all the answers

Which of the following enzymes is categorized as a peroxidase?

<p>Catalase (C)</p> Signup and view all the answers

Which of the following statements is true for dehydrogenases?

<p>Many depend on NAD⁺ and FAD. (B)</p> Signup and view all the answers

Which statement correctly describes optical specificity?

<p>Enzymes only act on one specific optical isomer. (D)</p> Signup and view all the answers

What function do lyases perform in biochemical reactions?

<p>Remove groups from substances to form double bonds (C)</p> Signup and view all the answers

Which of the following enzymes is an example of a dioxygenase?

<p>Tryptophan pyrrolase (A)</p> Signup and view all the answers

Which enzyme class includes enzymes that catalyze the interconversion of isomers?

<p>Isomerases (A)</p> Signup and view all the answers

Which enzyme would hydrolyze the ester bond of triglycerides?

<p>Lipase (C)</p> Signup and view all the answers

What type of reaction do oxidases participate in?

<p>Oxidation involving oxygen (C)</p> Signup and view all the answers

Which of the following substances is a non-specific irreversible inhibitor of enzymes?

<p>Heat (A)</p> Signup and view all the answers

What effect does fluoride ion (F⁻) have on enzyme activity?

<p>Inhibits by precipitating calcium ions (D)</p> Signup and view all the answers

Which substance is known to react with the thiol (SH) group of enzymes leading to irreversible inhibition?

<p>Iodoacetic acid (D)</p> Signup and view all the answers

What is the role of antithrombin III in enzyme inhibition?

<p>It irreversibly inhibits thrombin (B)</p> Signup and view all the answers

Which of the following can bind to Fe ions and inhibit cytochrome oxidase enzyme activity?

<p>Carbon monoxide (D)</p> Signup and view all the answers

Which of the following substances is secreted to protect the stomach lining against pepsin?

<p>Mucin (A)</p> Signup and view all the answers

What type of agents are organo-phosphorus compounds like Malathion classified as?

<p>Irreversible inhibitors (A)</p> Signup and view all the answers

What is the primary reason why certain irreversible inhibitors cannot be reversed?

<p>They change the enzyme structure permanently (C)</p> Signup and view all the answers

What is the role of inducers in enzyme synthesis?

<p>They enhance the rate of enzyme synthesis. (D)</p> Signup and view all the answers

Which type of effector binds non-covalently at the allosteric site to stimulate catalytic reactions?

<p>Positive effectors (C)</p> Signup and view all the answers

How does feedback inhibition affect enzyme activity?

<p>It inhibits the activity of the first enzyme in the pathway. (B)</p> Signup and view all the answers

What happens to the kinetic curve in allosteric regulation compared to Michaelis-Menten kinetics?

<p>It becomes sigmoidal. (A)</p> Signup and view all the answers

What effect does glucagon have on glycolytic enzyme synthesis?

<p>It decreases the synthesis of key glycolytic enzymes. (A)</p> Signup and view all the answers

What is the mechanism of reversible covalent modification in enzyme regulation?

<p>Addition or removal of phosphate groups. (A)</p> Signup and view all the answers

Which of the following accurately describes feedback regulation?

<p>It targets the gene for the first enzyme's synthesis. (B)</p> Signup and view all the answers

Which of the following statements is true about allosteric enzymes?

<p>They have a regulatory site separate from the active site. (C)</p> Signup and view all the answers

Flashcards

Enzymes

Biological catalysts that speed up chemical reactions by lowering activation energy.

What are enzymes made of?

Most enzymes are proteins, but some RNA molecules with catalytic activity are called ribozymes.

What is a substrate?

The substance that an enzyme acts upon in a chemical reaction.

What are intracellular enzymes?

These enzymes are produced and function within the cells, playing a role in metabolism.

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What are extracellular enzymes?

These enzymes are synthesized inside cells but function outside of them, like in the digestive system.

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What is an International Unit (IU)?

The amount of enzyme that converts 1 micromole of substrate to product per minute.

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What is a Katal?

The amount of enzyme that converts 1 mole of substrate to product per second.

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What is a cofactor?

A non-protein component that binds to an enzyme and is essential for its activity.

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Glutathione

A tripeptide composed of glutamate, cysteine, and glycine. It acts as a hydrogen donor, like in the enzyme insulinase (insulin-glutathione transdehydrogenase), which inactivates insulin.

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Vitamin C (L-ascorbic acid)

A water-soluble vitamin that acts as a powerful reducing agent. It carries hydrogen and is essential for enzymes like dopamine oxidase and polyphenol oxidase.

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Coenzyme Q (Ubiquinone)

A lipid-soluble molecule with a structure similar to vitamin K. It acts as a hydrogen carrier in the electron transport chain, enabling cellular energy production.

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Coenzyme A (CoASH)

A crucial coenzyme involved in important metabolic processes such as oxidative decarboxylation. It carries acyl groups of fatty acids, activating them for further reactions.

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Pyridoxal phosphate (Co-transaminase)

A form of vitamin B6 that acts as a coenzyme in crucial metabolic reactions like transamination, decarboxylation, and desulfuration of amino acids.

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Low Specificity Enzymes

Enzymes that can act on several substrates that share a common chemical bond.

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Optical Specificity Enzymes

Enzymes that specifically act on only one optical isomer of a substrate, ignoring its mirror image.

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Dual Specificity Enzymes

Enzymes that are capable of acting on two different substrates in the same reaction.

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Zymogen (Proenzyme)

An inactive form of an enzyme that can be activated when needed.

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Active Site Masking in Zymogens

A segment of a polypeptide chain that masks the active site of a zymogen, preventing its activity.

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Oxidoreductases

Enzymes that catalyze oxidation-reduction reactions. They transfer electrons from one molecule to another.

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Oxidases

A subgroup of oxidoreductases that use oxygen as a hydrogen acceptor, producing water or hydrogen peroxide.

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Dehydrogenases

A subgroup of oxidoreductases that cannot use oxygen as a hydrogen carrier. They rely on other coenzymes like NAD+ or FAD.

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Transferases

These enzymes move functional groups, including methyl, acyl, amino, or phosphate groups, from one molecule to another. Kinases, a key subclass, specifically transfer phosphate groups.

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Hydrolases

Enzymes that break down molecules by adding water across a bond. These enzymes are important in digestion, biosynthesis, and signal transduction.

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Lyases

These enzymes catalyze the breaking of bonds other than by hydrolysis, often forming a double bond. Examples include decarboxylases and aldolases.

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Isomerases

Enzymes that convert one isomer to another. These isomers differ in their spatial arrangement (optical, geometric, or positional) and can significantly impact biological activity.

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Ligases (synthetases)

Enzymes that catalyze the joining of two molecules with the help of ATP. These enzymes are vital for synthesis reactions and building larger molecules.

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Aerobic oxidase

An enzyme utilizing oxygen as an electron acceptor, resulting in the formation of hydrogen peroxide (H₂O₂). Examples include 1-L-aminoacid oxidase and 2-D-aminoacid oxidase.

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Anaerobic oxidase

An enzyme utilizing substrates without requiring the presence of oxygen. Examples include 1- Lactate dehydrogenase and 2-Succinate dehydrogenase.

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Allosteric site

A site on an enzyme that binds to a regulatory molecule, causing conformational changes in the enzyme's structure and affecting its activity, often at the active site.

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Effector

A molecule that binds to an allosteric site on an enzyme, influencing its activity.

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Feedback inhibition

A type of allosteric regulation in which the end product of a metabolic pathway directly inhibits the activity of an enzyme earlier in the pathway. It's like a brake on the entire process.

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Regulated enzyme

An enzyme that can exist in multiple states, switching between active and inactive forms, often controlled by phosphorylation or dephosphorylation.

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Phosphorylation

The addition of a phosphate group to an enzyme, often triggering a change in its activity.

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Dephosphorylation

The removal of a phosphate group from an enzyme, often causing it to become inactive.

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Enzyme synthesis regulation

The production of an enzyme can be controlled by the presence of inducers or repressors.

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Inducer

A substance that increases the synthesis of an enzyme, stimulating its production.

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What is irreversible inhibition?

A type of inhibition that cannot be reversed by increasing the concentration of the substrate or removing the inhibitor. This means the inhibitor permanently binds to the enzyme, disabling its activity.

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Give examples of irreversible inhibitors

Examples of irreversible inhibitors include strong acids, heavy metals like mercury, and organophosphate compounds like pesticides. These substances can permanently damage enzymes, making them inactive.

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How do irreversible inhibitors work?

Some irreversible inhibitors specifically target the active site of an enzyme by binding to a specific amino acid residue. For example, iodoacetic acid reacts with thiol (SH) groups, which are often found in the active site of enzymes.

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How can irreversible inhibitors affect activators and coenzymes?

Irreversible inhibitors can also act by blocking activators or coenzymes needed for the enzyme's function. For example, fluoride ions can precipitate calcium, which is required for the activation of clotting enzymes.

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What are anti-enzymes?

Anti-enzymes are substances produced by living cells that irreversibly inhibit the activity of specific enzymes. For example, the stomach lining secretes antipepsin to protect itself from the digestive enzyme pepsin.

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How do cyanide, azide, and carbon monoxide act as irreversible inhibitors?

Cyanide ions (CN⁻), azide ions (N₃⁻), and carbon monoxide (CO) are irreversible inhibitors that can bind to iron ions, which are essential for the activity of cytochrome oxidase, a vital enzyme in cellular respiration.

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How does Isoniazid (INH) work as an irreversible inhibitor?

Isoniazid (INH), a drug used to treat tuberculosis, inhibits the activity of transaminases by binding to the coenzyme pyridoxal phosphate. This prevents the transaminases from carrying out their vital functions.

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What is the mechanism of action of EDTA?

EDTA (Ethylene Diamine Tetr Acetic acid) is an irreversible inhibitor that chelates with magnesium and calcium ions, inhibiting the function of enzymes like enolase and kinases.

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Study Notes

Enzymes

  • Enzymes are protein catalysts, increasing the rate of biochemical reactions without being changed themselves.
  • All enzymes are proteins, except some RNA molecules (ribozymes) which act as enzymes, typically catalyzing phosphodiester bond cleavage and synthesis.
  • A substrate is the substance upon which an enzyme acts.
  • Enzymes are categorized into intracellular and extracellular types.
    • Intracellular enzymes work inside cells (e.g., metabolic enzymes).
    • Extracellular enzymes are produced inside but act outside cells (e.g., digestive enzymes).
    • Enzymes are primarily synthesized in the cytosol or ER, and some in the mitochondria.
    • They are present in all body cells and fluids (plasma, CSF), and intracellular compartments.

Enzyme Activity Units

  • International Unit (IU): Indicates the amount of enzyme catalyzing the conversion of one micromole of substrate to product per minute (1 IU = 1 µmol/min).
  • Katal: Represents the amount of enzyme catalyzing the conversion of one mole of substrate to product per second (1 Katal = 1 mol/s).

Enzyme Nature

  • Mostly protein-based.
  • Can exist as simple enzymes (only protein) or holoenzymes (protein plus non-protein cofactor).
    • Cofactors can be organic (vitamins) or inorganic (metal ions like Fe²⁺, Zn²⁺, Mg²⁺).

Prosthetic groups and Co-enzymes

  • Prosthetic group: A small organic molecule covalently bonded to the apoenzyme (protein portion).
  • Coenzyme: A small organic molecule non-covalently bonded to the apoenzyme. Often derived from vitamins and can accept or donate specific groups during a reaction.

Enzyme Specificity

  • Absolute: One enzyme catalyzes only one substrate.
  • Group: An enzyme catalyzes reactions involving specific functional groups.
  • Stereo: One enzyme catalyzes reactions utilizing only one stereoisomer of a substrate.
  • Dual: An enzyme catalyzes reactions on two substrates simultaneously.

Enzyme Classification

  • Enzyme Commission (EC) numbers categorize enzymes based on the type of reaction they catalyze (e.g., oxidation-reduction, transfer).
  • Each EC number has four parts identifying the reaction type, functional groups, coenzymes and substrate.

Enzyme Active Sites

  • The active site of an enzyme is a specific region that binds the substrate.
  • Complementary active site shape and functional groups allow binding of reactants to catalyze a reaction.
  • Enzyme-substrate complex temporarily forms during catalysis within the active site where reactions occur and products are formed.

Catalytic Efficiency

  • Enzymes dramatically increase reaction rates compared to non-enzymatic reactions (e.g., 10⁸ to 10¹⁰ times faster.)
  • Usually, each enzyme molecule can convert 10⁰ to 10³ substrate molecules into product per second.

Enzyme Kinetics

  • Kinetics studies the rates of enzyme-catalyzed reactions.
  • Velocity (rate) is the increase in product or decrease in substrate concentration over time.
  • Initial velocity (V₀) is measured at the beginning of the reaction when substrate concentration is high and product is low.
  • The Michaelis-Menten equation describes the relationship between initial velocity (V₀), maximum velocity (Vₘₐₓ), and substrate concentration ([S]). This relates to enzyme affinity by substrate concentration [Km]. Km is a constant where V₀ is half Vₘₐₓ.

Enzyme Inhibition

  • Inhibitors reduce enzyme activity.
    • Competitive inhibition: Inhibitors compete with the substrate for the active site, reducing substrate binding.
    • Non-competitive inhibition: Inhibitors bind to a different site, altering the enzyme's conformation and preventing the substrate from binding effectively, or affecting catalysis.
    • Uncompetitive inhibition: Inhibitors bind specifically to a complex formed from enzyme and substrate thus slowing the reaction or preventing products from detaching from the active site.)

Enzyme Regulation

  • Enzyme activity can be regulated by various factors:
    • Concentration of an enzyme (synthesis and adaptation rates).
    • Allosteric regulation, whereby an effector (molecule) binds to a site other than the active site, altering enzyme conformation, leading to an increase or decrease in enzyme activity.
      • Positive allosteric effectors: Increase enzyme activity.
      • Negative allosteric effectors: Decrease enzyme activity.
    • Feedback inhibition: End products of a biosynthetic pathway inhibit an earlier enzyme in the pathway.
    • Covalent modification (phosphorylation/dephosphorylation): Enzymes can be activated or deactivated by adding or removing phosphate groups.

Plasma Enzymes

  • Plasma enzymes are categorized into functional and non-functional:
    • Functional plasma enzymes are present in high concentrations and have roles in blood.
    • Non-functional plasma enzymes are present in minor quantities and do not have roles in blood, but can be indicative of cellular damage. Examples include AST, ALT, ALP, and CPK.

Isoenzymes

  • Isoenzymes are different forms of the same enzyme, differing in structure but having the same catalytic function.
  • Isoenzymes exhibit varying levels across body tissues and are used in diagnostics of diseases (e.g., heart attack, liver disease).

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