Enzyme regulation and kinetics

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Questions and Answers

What role do calcium ($Ca^{2+}$) and chloride ($Cl^−$) ions play in relation to alpha-amylase?

  • They act as cofactors required for alpha-amylase function. (correct)
  • They regulate the secretion of alpha-amylase in saliva.
  • They directly participate in the hydrolysis of starch.
  • They inhibit the activity of alpha-amylase.

What type of biochemical reaction does alpha-amylase catalyse?

  • Hydrolysis of starch to maltose (correct)
  • Isomerization of starch into glucose
  • Condensation of glucose to starch
  • Oxidation of maltose into glucose

How does cyanide impact cellular respiration?

  • It enhances the activity of cytochrome c oxidase.
  • It promotes glucose uptake in cells.
  • It inhibits the synthesis of ATP.
  • It blocks cytochrome c oxidase. (correct)

According to the principles of enzyme regulation, how might a product from one enzyme pathway affect another enzyme?

<p>It may either inhibit or activate the other enzyme. (B)</p> Signup and view all the answers

If the $K_m$ of an enzyme for a substrate is 0.577 M and the substrate concentration [S] is 10 M, what does this indicate about the enzyme's affinity for the substrate?

<p>The enzyme has a very high affinity for the substrate. (C)</p> Signup and view all the answers

Using the Michaelis-Menten equation, if $V_{max}$ is $3.31 \times 10^{-5}$ M/min, [S] is 10 M, and $K_m$ is 0.577 M, calculate the initial reaction rate ($V_0$).

<p>$V_0 = 3.13 \times 10^{-5}$ M/min (B)</p> Signup and view all the answers

What does the Y-intercept of a Lineweaver-Burk plot represent?

<p>$\frac{1}{V_{max}}$ (C)</p> Signup and view all the answers

In a Lineweaver-Burk plot, if the X-intercept is -1.733, what is the value of $K_m$?

<p>0.577 (C)</p> Signup and view all the answers

In a Lineweaver-Burk plot, with a Y-intercept of 30,233, what is the $V_{max}$?

<p>0.000033 (B)</p> Signup and view all the answers

If alpha-amylase reduces the rate of a reaction, what is a possible role of this enzyme?

<p>Stop catalysis altogether (D)</p> Signup and view all the answers

Where is alpha-amylase secreted in the human body?

<p>Saliva (A)</p> Signup and view all the answers

What is the primary mechanism by which aspirin reduces pain?

<p>By inhibiting the synthesis of prostaglandins (B)</p> Signup and view all the answers

In the context of enzyme kinetics, what does the Michaelis-Menten plot describe?

<p>The progress curves of an enzyme-catalyzed reaction (A)</p> Signup and view all the answers

What does 'ROR' stand for, in the context of enzyme activity?

<p>Rate Of Reaction (B)</p> Signup and view all the answers

How does Lineweaver-Burk plot relate to Michaelis-Menten kinetics?

<p>It is an alternative plot of the Michaelis-Menten equation (D)</p> Signup and view all the answers

What is the significance of enzymes needing cofactors?

<p>They allow catalytic activity and enzyme function (D)</p> Signup and view all the answers

How is a line weaver burk plot generated?

<p>Plotting 1/[S] against 1/V (C)</p> Signup and view all the answers

How do inhibitors regulate enzymes?

<p>Binding to the enzyme to change its activity (D)</p> Signup and view all the answers

What does the saturation point on a Michaelis-Menten plot indicate about the enzyme's active sites?

<p>Active sites are fully occupied by substrate. (C)</p> Signup and view all the answers

How does a competitive inhibitor affect the $K_m$ and $V_{max}$ of an enzyme-catalyzed reaction?

<p>$K_m$ increases, $V_{max}$ remains the same (D)</p> Signup and view all the answers

What is the primary mechanism by which a competitive inhibitor reduces enzyme activity?

<p>By competing with the substrate for binding to the enzyme's active site. (C)</p> Signup and view all the answers

Which of the following is a characteristic of noncompetitive inhibition?

<p>The $V_{max}$ is decreased, and $K_m$ remains the same. (C)</p> Signup and view all the answers

In noncompetitive inhibition, where does the inhibitor bind to the enzyme?

<p>At a separate site on the enzyme, distinct from the active site. (A)</p> Signup and view all the answers

What effect does a noncompetitive inhibitor have on the Lineweaver-Burk plot?

<p>It changes the slope and the y-intercept. (D)</p> Signup and view all the answers

Which type of inhibitor binds only to the enzyme-substrate complex?

<p>Uncompetitive inhibitor (C)</p> Signup and view all the answers

How is competitive inhibition overcome?

<p>By increasing the substrate concentration. (D)</p> Signup and view all the answers

What characterizes the binding of a competitive inhibitor to an enzyme?

<p>Reversible binding, where the inhibitor dissociates, allowing the enzyme to bind substrate. (A)</p> Signup and view all the answers

How does a noncompetitive inhibitor affect the enzyme's ability to bind substrate?

<p>It alters the enzyme's conformation, which can affect, but not necessarily prevent, substrate binding. (B)</p> Signup and view all the answers

If an enzyme undergoes a conformational change upon substrate binding, what type of inhibition would be most affected?

<p>Uncompetitive inhibition (D)</p> Signup and view all the answers

In the presence of a competitive inhibitor, what must occur to maintain the same reaction velocity at a given substrate concentration?

<p>Increase the enzyme concentration. (C)</p> Signup and view all the answers

What is the role of the active site in enzyme function?

<p>It is the region of the enzyme where the substrate binds and catalysis occurs. (A)</p> Signup and view all the answers

Why does a competitive inhibitor decrease the rate of enzyme catalysis?

<p>It reduces the number of enzyme molecules available for substrate binding. (C)</p> Signup and view all the answers

How would you describe the equilibrium constant ($K_i$) for inhibitor binding in enzyme kinetics?

<p>It is a measure of the inhibitor's affinity for the enzyme. (D)</p> Signup and view all the answers

What is the effect of a noncompetitive inhibitor on the maximum possible reaction rate ($V_{max}$)?

<p>$V_{max}$ is decreased. (A)</p> Signup and view all the answers

If an enzyme's activity is regulated by an inhibitor that only binds to the enzyme-substrate complex, what type of inhibition is this?

<p>Uncompetitive (A)</p> Signup and view all the answers

How does increasing the concentration of a competitive inhibitor affect the apparent $K_m$ of an enzyme for its substrate?

<p>It increases the apparent $K_m$. (A)</p> Signup and view all the answers

In enzyme kinetics, what does the term 'reversible' signify regarding inhibitors?

<p>The inhibitor can be removed, restoring enzyme activity. (A)</p> Signup and view all the answers

What is the key feature that distinguishes uncompetitive inhibition from other types of enzyme inhibition?

<p>Inhibitor binds only to the enzyme-substrate complex. (B)</p> Signup and view all the answers

How does the presence of a noncompetitive inhibitor impact the enzyme's turnover number?

<p>The turnover number decreases. (A)</p> Signup and view all the answers

How does the binding of inhibitors in mixed inhibition impact enzyme activity?

<p>It can bind to either the enzyme or the enzyme-substrate complex, generally decreasing $V_{max}$, while $K_m$ can increase or decrease. (D)</p> Signup and view all the answers

What is a key characteristic of irreversible inhibitors?

<p>They form a stable, permanent bond with the enzyme, often modifying it chemically. (A)</p> Signup and view all the answers

How do suicide inactivators function to inhibit enzymes?

<p>They initially bind as unreactive molecules but are converted into irreversible inhibitors by the enzyme's own mechanism. (B)</p> Signup and view all the answers

What are transition state analogues, and how do they inhibit enzymes?

<p>They are molecules that mimic the transition state structure, binding more tightly to the enzyme than the substrate, thus preventing the formation of the enzyme-substrate complex. (C)</p> Signup and view all the answers

How does Diisopropylphosphofluoridate (DIPF) act as an irreversible inhibitor of chymotrypsin?

<p>It modifies a serine residue in the active site, forming a stable covalent bond that inactivates the enzyme. (C)</p> Signup and view all the answers

What is the 'dead end complex' in enzyme inhibition?

<p>A complex where the enzyme is irreversibly modified and cannot catalyze any reaction. (D)</p> Signup and view all the answers

In mixed inhibition, what happens to the $V_{max}$ and $K_m$ values?

<p>$V_{max}$ decreases and $K_m$ either increases or decreases. (C)</p> Signup and view all the answers

Which of the following distinguishes mixed inhibition from other types of inhibition?

<p>The inhibitor binds to a separate site but may bind to either the enzyme or the enzyme-substrate complex. (B)</p> Signup and view all the answers

What is the direct effect of irreversible inhibitors on the enzyme's functional group?

<p>They strongly bind to or destroy a functional group that is essential for the enzyme's activity. (D)</p> Signup and view all the answers

How do transition state analogues prevent the formation of the enzyme-substrate complex (ES)?

<p>They bind more tightly to the enzyme than the substrate does, as they mimic the transition state, effectively 'stuck' and preventing ES formation. (D)</p> Signup and view all the answers

Which type of inhibitor is most likely to be used in important drug design strategies targeting specific enzymes?

<p>Suicide inactivators (B)</p> Signup and view all the answers

What is the significance of an inhibitor binding at a site separate from the active site in mixed inhibition?

<p>It affects both substrate binding and catalytic activity, potentially altering both $K_m$ and $V_{max}$. (A)</p> Signup and view all the answers

How does the formation of EI/ESI complexes affect the enzyme's catalytic activity in mixed inhibition?

<p>It typically decreases $V_{max}$, while $K_m$ can either increase or decrease, depending on the inhibitor’s relative affinity for the enzyme and the enzyme-substrate complex. (B)</p> Signup and view all the answers

What is the key difference between irreversible and reversible enzyme inhibitors regarding their interaction with the enzyme?

<p>Irreversible inhibitors typically modify the enzyme chemically, while reversible inhibitors do not. (A)</p> Signup and view all the answers

Why are suicide inactivators considered 'unreactive' until they bind to the active site of a target enzyme?

<p>They are designed to be activated by the enzyme's catalytic mechanism, forming a reactive intermediate that irreversibly modifies the enzyme. (C)</p> Signup and view all the answers

How does the action of transition state analogues differ from substrate analogues in enzyme inhibition?

<p>Transition state analogues mimic the intermediate state of the reaction, binding more tightly than substrate analogues and stabilizing the transition state. (C)</p> Signup and view all the answers

What distinguishes suicide inactivators from other irreversible inhibitors, such as DIPF?

<p>Suicide inactivators are converted into active inhibitors by the enzyme itself; DIPF directly modifies the enzyme. (D)</p> Signup and view all the answers

If an enzyme is rendered unable to catalyze reactions due to the formation of a ‘dead end complex,’ what does this imply about the state of the enzyme?

<p>The enzyme has been chemically modified or structurally altered in a way that prevents catalytic activity. (A)</p> Signup and view all the answers

How would a Lineweaver-Burk plot reflect mixed inhibition compared to an uninhibited reaction?

<p>Both the slope and the y-intercept change, indicating alterations in both $K_m$ and $V_{max}$. (C)</p> Signup and view all the answers

How does an allosteric enzyme's activity change when an effector binds at a site other than the active site?

<p>It undergoes a conformational change. (D)</p> Signup and view all the answers

What is the primary function of proteolytic cleavage in enzyme regulation?

<p>To activate an inactive protein (zymogen) into its functional form (C)</p> Signup and view all the answers

If enzyme 'P' regulates enzyme 'E', what effects are possible?

<p>'P' can regulate 'E' either positively or negatively. (B)</p> Signup and view all the answers

Where does proteolytic activation of proteases primarily occur?

<p>Stomach and pancreas (A)</p> Signup and view all the answers

How do enzymes with regulatory and catalytic subunits respond to modulators?

<p>They undergo a conformational change that affects their affinity for substrates. (D)</p> Signup and view all the answers

How do low and high concentrations of ATP affect PFK-1 activity?

<p>High ATP inhibits, low ATP activates. (D)</p> Signup and view all the answers

How does Fructose 2,6-bisphosphate (F26BP) affect PFK-1 activity?

<p>It enhances PFK-1 activity. (A)</p> Signup and view all the answers

What role does citrate play in the regulation of PFK-1?

<p>Inhibitor (B)</p> Signup and view all the answers

How does the level of AMP and ADP affect PFK-1 activity?

<p>They enhance PFK-1 activity. (B)</p> Signup and view all the answers

How would the $K_{0.5}$ value differ between the high-activity R state and low-activity T state of an enzyme?

<p>The R state would have a lower $K_{0.5}$ value. (A)</p> Signup and view all the answers

In a metabolic pathway where enzyme 'A' converts substrate to product 'B', which is then converted to 'C' by enzyme 'B', and 'C' is converted to 'D' by enzyme 'C', how would the accumulation of 'D' likely impact the pathway?

<p>'D' would inhibit enzyme 'A'. (B)</p> Signup and view all the answers

Which level of protein structure is most directly altered by reversible covalent modification?

<p>Tertiary structure (A)</p> Signup and view all the answers

During reversible covalent modification, what happens to the enzymes?

<p>They undergo chemical changes. (D)</p> Signup and view all the answers

How does the activation of zymogens through proteolytic cleavage contribute to blood coagulation?

<p>It initiates a cascade of cleaving events in the pathway. (A)</p> Signup and view all the answers

Which of the following best describes the role of regulatory subunits in enzymes?

<p>Bind to modulators, causing conformational changes that affect catalytic activity (A)</p> Signup and view all the answers

How does allosteric regulation impact the relationship between substrate concentration and enzyme activity?

<p>It results in a sigmoidal curve, reflecting cooperativity. (A)</p> Signup and view all the answers

How does the high-activity R state differ from the low-activity T state in terms of substrate affinity?

<p>The R state has a higher substrate affinity. (C)</p> Signup and view all the answers

In the context of enzyme regulation, what would be the likely effect of a mutation that prevents the binding of a regulatory molecule to an allosteric enzyme?

<p>The enzyme's activity would become independent of the regulatory molecule. (C)</p> Signup and view all the answers

Which mechanism primarily governs the regulation of proteases in the stomach and pancreas?

<p>Proteolytic activation of zymogens (A)</p> Signup and view all the answers

How does feedback regulation through allosteric control commonly affect enzyme activity?

<p>It can either increase or decrease the enzyme's activity. (B)</p> Signup and view all the answers

Flashcards

What is α-amylase?

An enzyme that reduces the rate of reaction or stops catalysis altogether.

Where is α-amylase secreted?

α-amylase is secreted here, beginning the digestion process.

What cofactors are needed for α-amylase activity?

Ca²⁺ and Cl⁻ function as these for α-amylase.

What reaction does α-amylase catalyze?

α-amylase catalyzes this process of starch into maltose.

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What is an example of an enzyme inhibitor?

This common medication is an enzyme inhibitor that blocks the synthesis of prostaglandins (molecules that cause pain).

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What does cyanide inhibit?

This substance inhibits cytochrome c oxidase and blocks cellular respiration.

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How do inhibitors regulate enzymes?

Products from one enzyme pathway may inhibit another.

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What is a Michaelis-Menten plot?

A plot displaying the relationship between substrate concentration and reaction rate, useful for determining Vmax and Km.

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What is a Lineweaver-Burk plot?

A double reciprocal plot used to determine Km and Vmax.

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Competitive inhibitor

Occupies the active site, preventing substrate binding; competes for the active site, forming fewer enzyme-substrate complexes

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Competitive Inhibition & Enzyme activity

Bound inhibitor doesn't inactivate the enzyme; when the inhibitor dissociates, the enzyme binds the substrate as normal.

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Competitive Inhibition: Reversibility

The competitive inhibitor can be overcome by increasing the substrate concentration.

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Competitive Inhibition: Vmax and Km

In competitive inhibition, Vmax remains the same, Km increases.

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Noncompetitive Inhibition: Binding Site

Inhibitor binds at a separate site from the active site.

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Enzyme Conformation Change

The enzyme undergoes a conformational change upon binding the substrate.

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Noncompetitive Inhibition: Vmax and Km

In noncompetitive inhibition, Vmax is decreased, Km stays the same.

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Uncompetitive Inhibition: Binding Specificity

The inhibitor binds only to the enzyme-substrate (E-S) complex.

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Uncompetitive Inhibition: Reversibility

Uncompetitive inhibition is reversible.

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Mixed Inhibition

Inhibitors bind at a site separate from the active site but may bind either to the enzyme (E) or the enzyme-substrate (ES) complex.

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Irreversible Inhibition

Inhibitors bind strongly to or destroy a functional group on the enzyme that is essential for its activity, inactivating the enzyme.

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Suicide Inactivators

Unreactive molecules that become irreversible inhibitors after binding to the active site and being converted.

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Transition State Analogues

Molecules that mimic the substrate's transition state and bind more tightly to the enzyme, preventing ES formation.

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DIPF

Diisopropylphosphofluoridate, an irreversible inhibitor of chymotrypsin.

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Dead End Complex

A complex where the enzyme is unable to catalyze any reaction.

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Enzyme Regulation

Regulation of metabolic pathways and enzyme activity.

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Enzyme Collaboration

Enzymes in a pathway collaborate where the product of one enzyme serves as the substrate for the next.

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Reversible Covalent Modification

Involves chemically altering some enzyme residues to modulate their activity.

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Proteolytic Cleavage

An inactive protein (zymogen) is cleaved to form a functional protein.

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Protease Regulation

Proteases in the stomach and pancreas are regulated this way.

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Zymogen Cascade

A series of inactive enzyme precursors are activated in a step-by-step manner.

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Blood Clotting Cascade

Blood coagulation occurs through sequential cleavages.

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Allosteric Regulation

A regulatory mechanism where a modulator binds to an enzyme, affecting its affinity for the substrate.

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Allosteric Enzyme Change

Allosteric enzymes undergo conformational changes upon binding effectors.

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Product Regulation

May regulate another enzyme positively or negatively.

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PFK-1 Activity

PFK-1 is an important enzyme

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Study Notes

  • Some enzymes are chemically altered through reversible covalent modifications.

Proteolytic Cleavage

  • An inactive protein (zymogen) is cleaved to form a functional group.
  • Proteases (PEs) of the stomach and pancreas are regulated this way.
  • This leads to a cascade of zymogens with activated enzyme.
  • Blood coagulation proceeds from one cleaving next in the pathway.

Regulation

  • Regulatory enzymes affect the regulation of reactions.
  • Enzymes work together where the product of one reaction becomes the substrate for the next: A → B → C → D.
  • A product (P) may regulate another enzyme (E) positively or negatively.
  • A modulator binds to its target to increase substrate affinity; this results in a conformational change.
  • Enzymes have regulatory and catalytic subunits.
  • Allosteric enzymes undergo conformational change when an effector binds at a site other than the active site.

PFK-1 Activity

  • Fructose-6-phosphate + ATP becomes fructose-1,6-bisphosphate + ADP.
  • ATP, AMP, and ADP regulate or inhibit activity.
  • Citrate and fructose-2,6-bisphosphate also regulate or inhibit activity.
  • PFK-1 activity is regulated by ATP; activity is higher with low ATP and lower with high ATP.
  • Fructose-2,6-bisphosphate can also regulate PFK-1 activity; activity is higher in the presence of fructose-2,6-bisphosphate (+F26BP) and lower in the absence of it (-F26BP).

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