Biochem 5.4  Enzyme Inhibitors Overview

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Questions and Answers

What characterizes irreversible inhibitors?

  • They permanently modify the enzyme's activity. (correct)
  • They are only found in endogenous sources.
  • They can be reversed by removing the inhibitor.
  • They bind to the allosteric site.

How are reversible inhibitors primarily classified?

  • Through their impact on substrate concentration.
  • Based on their source of origin.
  • According to their method of binding and effect on enzyme kinetics. (correct)
  • By their chemical structure and properties.

Which type of inhibition involves competition at the active site?

  • Competitive inhibition (correct)
  • Irreversible inhibition
  • Noncompetitive inhibition
  • Uncompetitive inhibition

What is a key difference between irreversible and reversible inhibition?

<p>Irreversible inhibition always leads to enzyme degradation. (A)</p> Signup and view all the answers

Which statement is true regarding the energetic costs associated with irreversible inhibition?

<p>It necessitates synthesizing more unaltered enzyme to regain function. (A)</p> Signup and view all the answers

What happens to the measured kinetics of an enzyme affected by reversible inhibition?

<p>They change significantly based on inhibitor binding site. (C)</p> Signup and view all the answers

Which characteristic defines competitive inhibitors?

<p>They prevent substrate binding by competing with it for the active site. (C)</p> Signup and view all the answers

Which type of inhibition is classified as a special case of mixed inhibition?

<p>Noncompetitive inhibition (D)</p> Signup and view all the answers

What effect do 'competitive-like' mixed inhibitors have on the apparent $K_m$?

<p>Increase the apparent $K_m$ (A)</p> Signup and view all the answers

How does the $V_{max}$ behave in the presence of mixed inhibitors?

<p>It decreases regardless of the inhibitor type (B)</p> Signup and view all the answers

On a Lineweaver-Burk plot, what happens to the y-intercept when mixed inhibitors are present?

<p>The y-intercept shifts upward (D)</p> Signup and view all the answers

What characterizes the intersection points of the Lineweaver-Burk plots of mixed inhibitors?

<p>They intersect at points above or below the x-axis, depending on the inhibitor type (C)</p> Signup and view all the answers

What is the shift direction of the x-intercept in 'uncompetitive-like' mixed inhibitors?

<p>It shifts away from the origin (to the left) (C)</p> Signup and view all the answers

What is the effect of uncompetitive inhibitors on both $K_m$ and $V_{max}$?

<p>They decrease both values by the same factor. (C)</p> Signup and view all the answers

In a Lineweaver-Burk plot, how does the x-intercept change with uncompetitive inhibition?

<p>It shifts towards the left. (C)</p> Signup and view all the answers

What characteristic of noncompetitive inhibitors differentiates them from uncompetitive inhibitors?

<p>They cause no change in $K_m$ but decrease $V_{max}$. (B)</p> Signup and view all the answers

What is the slope of the Lineweaver-Burk plot with uncompetitive inhibition?

<p>It remains unchanged. (D)</p> Signup and view all the answers

How does the y-intercept change in a Lineweaver-Burk plot with noncompetitive inhibition?

<p>It shifts upwards. (B)</p> Signup and view all the answers

Why might it be difficult to determine the $K_m$ of an enzyme when noncompetitive inhibition occurs?

<p>The $K_m$ is unchanged, making comparison difficult. (B)</p> Signup and view all the answers

What distinguishes 'uncompetitive-like' mixed inhibitors from true uncompetitive inhibitors?

<p>They decrease both values but by different factors. (B)</p> Signup and view all the answers

What is a common visual problem when interpreting Michaelis-Menten plots in the presence of uncompetitive inhibitors?

<p>Distinguishing from mixed inhibitors can be challenging. (A)</p> Signup and view all the answers

What characteristic differentiates competitive inhibitors from uncompetitive inhibitors?

<p>Uncompetitive inhibitors do not compete with substrate binding. (B)</p> Signup and view all the answers

Which statement accurately describes mixed inhibitors?

<p>They can bind both free enzymes and enzyme-substrate complexes. (C)</p> Signup and view all the answers

In the case of noncompetitive inhibitors, how is the apparent $K_m$ value affected?

<p>It remains unchanged. (C)</p> Signup and view all the answers

What is the primary binding site for competitive inhibitors?

<p>The enzyme's active site. (D)</p> Signup and view all the answers

Which type of inhibitor is a substrate analog that binds the enzyme's active site?

<p>Competitive inhibitor. (D)</p> Signup and view all the answers

What defines a purely noncompetitive inhibitor?

<p>It has the same affinity for both free enzyme and enzyme-substrate complex. (C)</p> Signup and view all the answers

Which characteristic is true for uncompetitive inhibitors?

<p>They prevent the completion of the enzyme-substrate reaction. (C)</p> Signup and view all the answers

What occurs to the rate of reaction when a noncompetitive inhibitor is present?

<p>The maximum reaction rate ($V_{max}$) is decreased. (A)</p> Signup and view all the answers

What type of inhibitor causes an increase in apparent $K_m$ without changing $V_{max}$?

<p>Competitive inhibitor (B)</p> Signup and view all the answers

Which type of inhibition is characterized by the inhibitor binding to the enzyme-substrate complex more than the free enzyme?

<p>Mixed (B)</p> Signup and view all the answers

What is the effect of noncompetitive inhibitors on $V_{max}$?

<p>Decreases $V_{max}$ (B)</p> Signup and view all the answers

In the case of uncompetitive inhibition, what happens to both $K_m$ and $V_{max}$?

<p>Both decrease by the same factor (A)</p> Signup and view all the answers

How is the effect of competitive inhibitors represented on a Michaelis-Menten plot?

<p>Right shift of $K_m$ with unchanged $V_{max}$ (D)</p> Signup and view all the answers

What is observed on a Lineweaver-Burk plot when $K_m$ is increased?

<p>Shifts rightward (D)</p> Signup and view all the answers

Which type of inhibition occurs when the inhibitor binds to both the enzyme and the enzyme-substrate complex equally?

<p>Noncompetitive (A)</p> Signup and view all the answers

What distinguishes uncompetitive inhibitors from competitive inhibitors in terms of enzyme-substrate interaction?

<p>Bind to the enzyme-substrate complex only (B)</p> Signup and view all the answers

Flashcards

Irreversible Inhibition

A type of enzyme inhibition where the inhibitor binds permanently to the enzyme, decreasing its activity. This is typically due to irreversible covalent modifications or very tight binding.

Competitive Inhibition

A type of enzyme inhibition where the inhibitor binds reversibly to the enzyme's active site, competing with the substrate for binding.

Uncompetitive Inhibition

A type of enzyme inhibition where the inhibitor binds reversibly to a site on the enzyme different from the active site, but only to the enzyme-substrate complex, not the free enzyme. This binding changes the enzyme's conformation, preventing it from converting the substrate to product.

Mixed Inhibition

A type of enzyme inhibition where the inhibitor binds reversibly to the enzyme at an allosteric site, changing the enzyme's conformation and affecting its affinity for both substrate and product.

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Noncompetitive Inhibition

A special case of mixed inhibition where the inhibitor binds to the enzyme with equal affinity whether or not the substrate is present.

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Enzyme Synthesis

The process of synthesizing more of an enzyme to compensate for the loss of activity due to irreversible inhibition.

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Ka (Inhibitor Binding Constant)

A measure of how tightly an inhibitor binds to an enzyme, with a lower Ka value indicating stronger binding.

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Reversible Inhibition (Non-covalent)

A type of reversible enzyme regulation where the inhibitor binds non-covalently to the enzyme, inducing conformational changes that affect the enzyme's activity.

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Substrate Analog (Competitive Inhibitor)

A substrate analog that structurally resembles the substrate but does not undergo a reaction after binding to the enzyme.

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Purely Noncompetitive Inhibitor

A noncompetitive inhibitor's special property where the binding of the substrate and the inhibitor happens independently, without affecting each other.

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Primary Binding Site

The site on an enzyme where the substrate binds, also called the active site.

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Allosteric Site

A site on an enzyme different from the active site where inhibitors can bind to change the enzyme's activity.

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Michaelis-Menten Plot

The graphical representation of enzyme kinetics, plotting initial reaction velocity (V0) against substrate concentration ([S]).

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Lineweaver-Burk Plot

A plot that linearizes the Michaelis-Menten plot, making it easier to analyze enzyme kinetics and inhibition.

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Michaelis-Menten Plot

A plot showing the relationship between initial velocity (V0) and substrate concentration ([S]).

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Competitive-like Mixed Inhibitor

Mixed inhibitors that increase the apparent Km. They bind to the enzyme and decrease the maximum velocity but do NOT increase the apparent Km.

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Uncompetitive-like Mixed Inhibitor

Mixed inhibitors that decrease the apparent Km. They bind to the enzyme and decrease the maximum velocity but do NOT increase the apparent Km.

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Effect of Competitive-like Mixed Inhibitor on Km

The apparent Km of the enzyme is increased when a competitive-like mixed inhibitor is present.

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Effect of Uncompetitive-like Mixed Inhibitor on Km

The apparent Km of the enzyme is decreased when an uncompetitive-like mixed inhibitor is present

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Lineweaver-Burk plot: Uncompetitive inhibition

On a Lineweaver-Burk plot, uncompetitive inhibition causes the x-intercept (representing -1/$K_m$) to shift left and the y-intercept (representing 1/$V_{max}$) to shift upward, resulting in parallel lines for uninhibited and inhibited data.

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Lineweaver-Burk plot: Noncompetitive inhibition

On a Lineweaver-Burk plot, noncompetitive inhibition causes the y-intercept (representing 1/$V_{max}$) to shift upward, while the x-intercept (representing -1/$K_m$) remains unchanged.

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Noncompetitive Inhibition: A special case

Noncompetitive inhibitors are a special type of mixed inhibitor, where the inhibitor binds to the enzyme with the same affinity whether or not the substrate is bound.

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Visual differences: Mixed vs. Uncompetitive

Mixed inhibition can appear similar to uncompetitive inhibition on a Michaelis-Menten plot, but the distinction is that $V_{max}$ and $K_m$ change by different factors in mixed inhibition.

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Distinguishing uncompetitive and mixed inhibitors

Uncompetitive inhibitors are difficult to distinguish from mixed inhibitors with similar effects on Michaelis-Menten plots. Lineweaver-Burk plots provide clearer visual differences.

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Study Notes

Enzyme Inhibitors

  • Enzymes are inhibited by small molecules that modify reaction kinetics
  • Inhibitors can be reversible or irreversible
  • Reversible inhibition can be undone by removal of the inhibitor molecule
  • Irreversible inhibition is permanent, and the enzyme is altered covalently. This modification can't be undone.
  • Reversible inhibitors are classified as competitive, uncompetitive, or mixed based on their mechanism of action.
  • Irreversible inhibition is typically caused by exogenous molecules like synthetic drugs or natural toxins.

Irreversible Inhibitors

  • Irreversible inhibition creates a permanent alteration to the enzyme, thus decreasing its activity.
  • These changes are usually covalent modifications.
  • Irreversible inhibitors are energetically costly because the enzyme needs to be resynthesized.
  • They are generally used for regulation or as synthetic drugs, or natural toxins

Kinetic Effects of Irreversible Inhibitors

  • Irreversible inhibitors require a chemical reaction, meaning it take more time to fully inhibit.
  • An irreversible inhibitor decreases the Vmax of the enzyme.
  • The apparent KM may briefly increase initially but eventually stays the same.

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