DNA Replication Process Overview

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What is the function of DNA polymerase ε in DNA replication?

Adding deoxynucleotides to the leading strand

What is the main function of RPA in DNA replication?

To protect single-stranded DNA from nucleases

Which enzyme is responsible for the initiation of Okazaki fragment synthesis?

Primase

What is the role of ligase in DNA replication?

To ligate the different strands being formed

Which complex threads onto DNA, prevents complex detachment, and displaces primase at replication initiation?

PCNA complex

During DNA replication, which enzyme unwinds the parental DNA strands?

Helicase

In DNA replication, why does DNA synthesis always proceed in the 5′→3′ direction?

It allows for the formation of phosphodiester bonds between the 3' oxygen of a growing strand and the α phosphate of a dNTP.

What is the function of ORC proteins and MCM proteins in the pre-replication complex?

To recognize origins of replication and recruit DNA replication machinery.

Why is DNA replication considered semi-conservative?

Each new DNA molecule has one 'old' strand and one 'new' strand.

What is the key enzymatic activity of DNA polymerase during replication?

Polymerase activity.

What initiates chain synthesis during DNA replication?

RNA primer.

Where does DNA replication start and continue in both directions to create a replication bubble?

Origin of replication points.

What is the main function of telomeres?

Protecting chromosome ends

Which proteins recognize the telomere sequence and assist in loop formation?

TRF1 and TRF2

What happens to telomeres with each round of DNA replication?

They shorten

Short telomeres are associated with increased risk of which group of diseases?

Age-related diseases

Which enzyme is responsible for protecting chromosome ends by adding repetitive DNA sequences?

Telomerase

What is the specific function of telomere non-specific proteins like Ku?

Repairing DNA damage at the telomeres

Which cellular process is most directly affected by telomere shortening?

Mitotic cell division

What is the function of a clamp loader in DNA replication?

Opening the PCNA ring to load onto DNA

Which enzyme synthesizes short RNA primers in DNA replication?

RNA primase

How many nucleotides does the G-tail at telomere ends average in humans?

75-300 nucleotides

Which enzyme is responsible for adding DNA to the RNA primer on the leading strand?

DNA polymerase-alpha

What is the primary role of DNA polymerase δ in the lagging strand synthesis process?

Polymerizing the lagging strand

What is a common feature of all telomeres?

Orientation of a G-rich single-stranded section

_______ adds deoxynucleotides to the free hydroxyl group at the 3′ end of the primer

DNA polymerase

Okazaki fragments are formed during the synthesis of the _______ strand

lagging

RPA protects single strand DNA from nucleases and prevents the formation of secondary structures during _______ replication

DNA

The leading strand is synthesized continuously by a complex of DNA polymerase ε and a trimeric complex known as _______

PCNA

_______ is responsible for relieving tensions created by the replication bubble

Topoisomerases

The clamp loader opens the PCNA ring to load onto DNA, thus it is also known as the ______ loader

clamp

DNA polymerase-alpha adds approximately 20 nucleotides of DNA to the RNA primer synthesized by ______

RNA primase

The leading strand is synthesized continuously, while the lagging strand is synthesized discontinuously in fragments known as ______ fragments

Okazaki

The G-tail at telomere ends averages between 75-300 ______ in humans

nucleotides

The orientation of the G-rich strand at telomeres generates a single-stranded ______ at the chromosome end

G-tail

DNA replication only occurs during ______

S-phase

The two strands are separated and used as a template for the formation of the new ______

strand

DNA synthesis always proceeds in the ______ direction

5′→3′

DNA polymerases cannot initiate chain synthesis de novo: they require a short, preexisting RNA or DNA strand, called a ______, to begin chain growth

primer

Mammalian genomes have thousands of origins of replications that create replication bubbles that end up ______ to each other

fusing

Telomeres form loops because of the nature of the G-tail, which can complement internal tracks of telomere sequence and the presence of Telomere specific proteins that recognize the telomere sequence, bind telomeres and assist in the formation of the ______

loop

Short telomeres play a central role in the development of age-related diseases at the CNS (Central Nervous System) level such as Alzheimer’s, Parkinson’s, and ______

dementia

During DNA replication, the enzyme responsible for unwinding the parental DNA strands is ______

helicase

The main function of telomeres is protection against exonucleases, DNA repair, and ______

recombination

Telomere replication problem arises because telomeres get shorter with every replication, leading to unprotected ends and ultimately to ______

senescence

The leading strand is synthesized continuously by a complex of DNA polymerase ε and a trimeric complex known as _______

CMG helicase

Telomeres form loops because of the nature of the G-tail, which can complement internal tracks of telomere sequence and the presence of Telomere specific proteins that recognize the telomere sequence, bind telomeres and assist in the formation of the _______

T-loop

During DNA replication, the enzyme responsible for unwinding the parental DNA strands is _______

helicase

DNA polymerases cannot initiate chain synthesis de novo: they require a short, preexisting RNA or DNA strand, called a _______, to begin chain growth

primer

The main function of telomeres is protection against exonucleases, DNA repair, and _______

aging

______ is responsible for relieving tensions created by the replication bubble

Topoisomerases

In DNA replication, the enzyme responsible for unwinding the parental DNA strands is ______

Helicases

The leading strand is synthesized continuously by a complex of DNA polymerase ε and a trimeric complex known as _______

PCNA

Short telomeres are associated with increased risk of which group of diseases?

age-related diseases

Which enzyme synthesizes short RNA primers in DNA replication?

Primases

The ______ strand is synthesized continuously by a complex of DNA polymerase ε and a trimeric complex known as ______

leading, PCNA

During DNA replication, the enzyme responsible for unwinding the parental DNA strands is ______

helicase

Short telomeres play a central role in the development of age-related diseases at the CNS (Central Nervous System) level such as Alzheimer’s, Parkinson’s, and ______

dementia

The main function of telomeres is protection against exonucleases, DNA repair, and ______

recombination

The orientation of the G-rich strand at telomeres generates a single-stranded ______ at the chromosome end

overhang

Origins of replication are recognized by ORC proteins and MCM proteins that form the pre-Replication complex. Their function is to recruit the DNA replication machinery during S-phase, and thus, the pre-replication is heavily regulated during the cell cycle. The main function of ORC proteins and MCM proteins is to form the ______ complex.

pre-replication

The leading strand is synthesized continuously by a complex of DNA polymerase ε and a trimeric complex known as ______.

PCNA

The lagging strand is synthesized discontinuously in fragments known as ______ fragments.

Okazaki

Telomeres form loops because of the nature of the G-tail and the presence of Telomere specific proteins that recognize the telomere sequence, bind telomeres and assist in the formation of the ______.

T-loop

The key to understanding DNA replication lies in the enzymatic activity of DNA polymerase. DNA synthesis always proceeds in the 5′→3′ direction because chain growth results from the formation of a phosphodiester bond between the 3′ oxygen of a growing strand and the α phosphate of a dNTP. DNA polymerases cannot initiate chain synthesis de novo: they require a short, preexisting RNA or DNA strand, called a ______, to begin chain growth and a template.

primer

This quiz covers the general steps and key enzymatic activities involved in the DNA replication process, including primer base-pairing, leading and lagging strand synthesis, formation of Okazaki fragments, and the functions of helicases and primases.

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